gdf9 (LOC106612229)


Basic Information

Item Value
gene id gdf9
gene name LOC106612229
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 9584246 ~ 9590828 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969737.1
CCGGAAACAGcaggtagtggtggtgggggacCCTCGACGCATCATCATAGAAGACGACGGACGGGAGAGTCGGCGCTGACAGCACAGGGAGATCCATGGCGATCCACCCCAGTAATGAGACCCGAGTCGAGATATGTTCGATACATGAAACGACTGTACAGGATATCTTCAAGACATGAGAGGAGTTCGGAAGGGAACAACCACTTGTACAACACAGTTCGACTTATAACACCGCGGGACGAGTGCCTGGAGCAAAGCAAAGAGTTCTTCATGCAAGACCTCTCCTACAATTTGGGCCGTGTCAGAGCCAAGGAGCAGCTCCTGAAGTCTGTCCTGCTGTACTCCTTCGACCAAGAGCAGGCCACGTTCATGACTAACCAGTGTTACCAAGATGTGAAAGAGCAGGATACCCACAATCAGTGTCCTCTCTGCCCAAGCACCCATCACTCAGTTAACTTCCTGTTCCACACGGACCGCAGGAGGAAGTGGGTTGAGGTGGACATCACAGCTTTCCTCCGCCCTCTCATCCAGTCCCACAAGAAGGACATTCACCTACTGCTCAACCTGACCTGTGTGGAGGGCAGAGGCAGGGAGGCTAaggctggaggagaggagtggagcggTAGGAGCCCCGTGGAGCTCCACCTAAGGTCTCCGTCCTTGCTGCTGTACCTCAACGACACCAGCGAGCTGGCTCACCAAAGATGGCTGCCCACCAGGTCACAAGGTCATCCGAGGTCGGTCAATGAGGTGGACACCTTAGAGAGCCTGGCGGAGTTCAAACCAGAGCAAAGGATCATCCGGAGCGAGAGGAGGCGGCTGAGGAGAGAATCTCCATATCTGTCGACGAACAACGCAGGAGACAAAACGAGCACGAAGACCTTCCTCCCGGACCTCCTCCCAAGTTCTGACTTCCCTACGAGCGACTGTGCCTTGTACGACTTCAGAGTGAGCTTCAGTGAGCTCAAACTGAGCCATTGGATCATTTTCCCCCACAGGTACAACCCAAGGTACTGTAAAGGCACCTGTCCCAGGGCTGTGGGGTTCATCTACGGCTCCCCCAGACACACCTTCTTCCAGAACATGATCTACCACAAACTGGACTCCTCTGTGCCAAGACCTTCCTGTGTTCCTTCAGAGTACGACCCCCTGAGTGTTTTAACCCTTGAAGCTGACTCCATCGCCTACAAGGAGTTAGATGAAATGATCGCTACGAGGTGCACATGTCGCTAAAGGCCCACCTCCAGGGTCgggctcaattccatttcaatctaaactgaaattccaattgtTCTAAATAgttttcaatgtaaaaaaaaaaaaatatatatatagatatacactTGCTCCAGCTGATCTGGAAAgggactgaattgaaatggaattgaccctacCTACCTTCCTGCCTGATGACGTTTTACCAGCCTCAACACTTTGACTGTTAACCTACCTTCTGCTTTGACTGTTAACCTACCTTCTGCTTTGACTGTTAACCTACCTTCTGCTTTGACTGCCGCTCGACTTATTCCATCCTCAAGCGCTTGACTTCAATTACTTCCTCACATTAATTGGCTATTGTAACATCCTGGTCTTGTGACTTCATGTCAAAACATCAGTGTCTTTGTCAAAACATCAGTCCGTTGAGTTCGATTTGATCTAGAACAGATGTATTTACTCACTTGCCAAAGTATTTTTATCTGAATGGAAGATGTGGCATTAGTTTCTTTGTTTATGTGAAGTGATAGGAGGAATGTTGTGAAGATGTCTTGTTTGTCATCTGCTTTTGCAATGTGTTGACATGCATGGATTGATATTTTACAAATTTAATTTGATATAATTTATTATTAATATGATTTAAGTTATTTTTGTTAATTTATTTTGGGTGTTTTGTCATTATTCTTTCACACTAACTGGTACATTTTAAGTACATCTGTTCTGGACAAAATATTGTTTTAAAGTAGTCCTATACACTCGTATCAAACACTTTCACGTTTCATTTTAGTCCTGGGGATTGCAGACGGTTGTTTTATGGACAACCTCTCTCTTTCATACGGTCCAGAATGTAAGTTATCTTGTATAGCCAACTTGATGTTTCAGTGTGTATTTATTACCCTGGGTCATGAAATGACTGCATACCTATATGAATTTGTATTGGCAAATTTAACTAAAATGCACGTCGTCTAtttatgcaacaacaacaaaaaatattgtaCAGTCTCGTTTGGCTCACTGATTATCACAATGTTTAAATTTGATAACTTAAAATATTAGTTTGAAAAAAAATAAAGAGTACACAAAGA
>XM_021583302.2
TCTACATCTGTGTACAGACGTTACCGTCCAAGGACCTTCACATTTTCGACGTAAGAGTTGATTGCGCACACCTGTTCAATTTGAGAGACTCGTGTATAGGTTGGTTGACTTGAGAACGTTCTCCATCAAGTTGACGGATTGATTTACAATGGAGACTCCCCTCCACTTGACCTCTGTTTTACTACAACTCTTGATCAGCGGCTTTTCACTTGGCTCGTCCCCGACCACGTCAAATCTAGCTGACGAGTTTGGCGATTCCGTTTTATACCAACATGGCAGTATCTTGTCACCCCTTTTGAAGGCGCTGACAGCACAGGGAGATCCATGGCGATCCACCCCAGTAATGAGACCCGAGTCGAGATATGTTCGATACATGAAACGACTGTACAGGATATCTTCAAGACATGAGAGGAGTTCGGAAGGGAACAACCACTTGTACAACACAGTTCGACTTATAACACCGCGGGACGAGTGCCTGGAGCAAAGCAAAGAGTTCTTCATGCAAGACCTCTCCTACAATTTGGGCCGTGTCAGAGCCAAGGAGCAGCTCCTGAAGTCTGTCCTGCTGTACTCCTTCGACCAAGAGCAGGCCACGTTCATGACTAACCAGTGTTACCAAGATGTGAAAGAGCAGGATACCCACAATCAGTGTCCTCTCTGCCCAAGCACCCATCACTCAGTTAACTTCCTGTTCCACACGGACCGCAGGAGGAAGTGGGTTGAGGTGGACATCACAGCTTTCCTCCGCCCTCTCATCCAGTCCCACAAGAAGGACATTCACCTACTGCTCAACCTGACCTGTGTGGAGGGCAGAGGCAGGGAGGCTAaggctggaggagaggagtggagcggTAGGAGCCCCGTGGAGCTCCACCTAAGGTCTCCGTCCTTGCTGCTGTACCTCAACGACACCAGCGAGCTGGCTCACCAAAGATGGCTGCCCACCAGGTCACAAGGTCATCCGAGGTCGGTCAATGAGGTGGACACCTTAGAGAGCCTGGCGGAGTTCAAACCAGAGCAAAGGATCATCCGGAGCGAGAGGAGGCGGCTGAGGAGAGAATCTCCATATCTGTCGACGAACAACGCAGGAGACAAAACGAGCACGAAGACCTTCCTCCCGGACCTCCTCCCAAGTTCTGACTTCCCTACGAGCGACTGTGCCTTGTACGACTTCAGAGTGAGCTTCAGTGAGCTCAAACTGAGCCATTGGATCATTTTCCCCCACAGGTACAACCCAAGGTACTGTAAAGGCACCTGTCCCAGGGCTGTGGGGTTCATCTACGGCTCCCCCAGACACACCTTCTTCCAGAACATGATCTACCACAAACTGGACTCCTCTGTGCCAAGACCTTCCTGTGTTCCTTCAGAGTACGACCCCCTGAGTGTTTTAACCCTTGAAGCTGACTCCATCGCCTACAAGGAGTTAGATGAAATGATCGCTACGAGGTGCACATGTCGCTAAAGGCCCACCTCCAGGGTCgggctcaattccatttcaatctaaactgaaattccaattgtTCTAAATAgttttcaatgtaaaaaaaaaaaaatatatatatagatatacactTGCTCCAGCTGATCTGGAAAgggactgaattgaaatggaattgaccctacCTACCTTCCTGCCTGATGACGTTTTACCAGCCTCAACACTTTGACTGTTAACCTACCTTCTGCTTTGACTGTTAACCTACCTTCTGCTTTGACTGTTAACCTACCTTCTGCTTTGACTGCCGCTCGACTTATTCCATCCTCAAGCGCTTGACTTCAATTACTTCCTCACATTAATTGGCTATTGTAACATCCTGGTCTTGTGACTTCATGTCAAAACATCAGTGTCTTTGTCAAAACATCAGTCCGTTGAGTTCGATTTGATCTAGAACAGATGTATTTACTCACTTGCCAAAGTATTTTTATCTGAATGGAAGATGTGGCATTAGTTTCTTTGTTTATGTGAAGTGATAGGAGGAATGTTGTGAAGATGTCTTGTTTGTCATCTGCTTTTGCAATGTGTTGACATGCATGGATTGATATTTTACAAATTTAATTTGATATAATTTATTATTAATATGATTTAAGTTATTTTTGTTAATTTATTTTGGGTGTTTTGTCATTATTCTTTCACACTAACTGGTACATTTTAAGTACATCTGTTCTGGACAAAATATTGTTTTAAAGTAGTCCTATACACTCGTATCAAACACTTTCACGTTTCATTTTAGTCCTGGGGATTGCAGACGGTTGTTTTATGGACAACCTCTCTCTTTCATACGGTCCAGAATGTAAGTTATCTTGTATAGCCAACTTGATGTTTCAGTGTGTATTTATTACCCTGGGTCATGAAATGACTGCATACCTATATGAATTTGTATTGGCAAATTTAACTAAAATGCACGTCGTCTAtttatgcaacaacaacaaaaaatattgtaCAGTCTCGTTTGGCTCACTGATTATCACAATGTTTAAATTTGATAACTTAAAATATTAGTTTGAAAAAAAATAAAGAGTACACAAAGA

Function

NR:

description
growth/differentiation factor 9

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K22673 GDF9; growth differentiation factor 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969737.1 False 2300 mRNA 0.45 4 9584246 9590828
XM_021583302.2 True 2529 mRNA 0.45 3 9586453 9590828
Loading

Neighbor

gene id symbol gene type direction distance location
nudcd2 nudcd2 coding upstream 31645 9548387 ~ 9552601 (+)
LOC110504533 sfxn1 coding upstream 335280 9224032 ~ 9248966 (+)
LOC110504529 pp2aa coding upstream 363020 9211817 ~ 9221226 (+)
LOC118946015 NA coding upstream 664019 8918493 ~ 8920227 (+)
LOC118946014 NA coding upstream 666799 8912720 ~ 8917447 (+)
LOC110504554 LOC106604229 coding downstream 9250 9600078 ~ 9602977 (+)
LOC110504537 LOC100380717 coding downstream 12991 9603819 ~ 9617333 (+)
LOC110504547 LOC106612224 coding downstream 26604 9617432 ~ 9622394 (+)
LOC110504549 LOC106612225 coding downstream 31654 9622482 ~ 9638162 (+)
kctd16a LOC105025951 coding downstream 136168 9726996 ~ 9728426 (+)
G2249776 LOC106612227 non-coding upstream 13354 9560115 ~ 9570892 (+)
G2249813 NA non-coding upstream 40074 9542466 ~ 9544172 (+)
G2249812 NA non-coding upstream 42265 9540148 ~ 9541981 (+)
G2249794 NA non-coding upstream 81755 9501874 ~ 9502491 (+)
G2249767 NA non-coding upstream 109296 9472044 ~ 9474950 (+)
G2249847 NA non-coding downstream 63370 9654198 ~ 9658851 (+)
G2249911 NA non-coding downstream 158198 9749026 ~ 9853206 (+)
G2249928 NA non-coding downstream 191886 9782714 ~ 9783812 (+)
kif3a kif3a non-coding downstream 335955 9895102 ~ 9949036 (+)
G2250253 NA non-coding downstream 367289 9958117 ~ 9958353 (+)
G2249775 NA other upstream 26779 9481680 ~ 9557467 (+)
G2249785 LOC106604237 other upstream 97324 9486245 ~ 9486922 (+)
G2249418 LOC106612241 other upstream 472924 9106708 ~ 9111322 (+)
G2249058 NA other upstream 749871 8831981 ~ 8834375 (+)
G2247754 NA other upstream 2347317 7236526 ~ 7236929 (+)
G2250462 NA other downstream 638092 10228920 ~ 10229999 (+)
G2251174 NA other downstream 1605772 11196600 ~ 11199436 (+)
G2251181 NA other downstream 1622498 11213326 ~ 11213968 (+)
G2251155 ogt other downstream 1625847 11216675 ~ 11295004 (+)

Expression

gdf9(LOC106612229) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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gdf9(LOC106612229) Expression in each Bioproject

Bar chart with 17 bars.
gdf9(LOC106612229) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network