LOC118946054 (LOC106612220)


Basic Information

Item Value
gene id LOC118946054
gene name LOC106612220
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 9883166 ~ 9894880 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970269.1
tctcatctctctctccctccctctctgatctGCCTGAGAGCTCCTTCCTCTTCACTGAGCAGGGCGAGAGGAAGATGAGTAGTGGTGAAGCTCCTCCCACCATCACCATGGCTCTGATCAACCCCCAGACCCCCTCCACCTCGGCCGACACCAAACAGTCTTCCACTCAGCAGCTGTCCATCAGTGTGTGTGCTGCTCTGTACTCCTACAAGCCCCGTCGTTCTGAGGAACTGGAGCTGAGGAAGggggagatggtgggggtgtatgGGAAGTTTAAGGAGGGCTGGCTCCGAGGCCTCTCTCTACGGACGGGCAAAGTGGGCATCCTCCCCGGCAACTACGTTACACCTGTCCTCAGAACCTCTGCCAGGCTCTTGGATTCCAAGGCAGTGACAGCAGGCCCTGGTACAGTCTCTGGAGGAagaacctcctcctcctccaaaacGCCAGCGGTGGTTCTAGCTCTCGACAGGGTCAACTCAGATGGCACTAGTTACTCTACTGGACAACGGGTTCCGCAGCAGTCTGTTTCCATGGCCACGCTGCCTATGATATCATCAGGCGGCGCCACCAGACAATCCCTGCATGGGGTGAGCTCGGAGGGATGGGACACAGTGAGGAGGGTCTTCCATCGTTCACACAGAGGCTCATCTCAGCGGGGAAAACACTACCCCCACACCACCATCTCATCCAGCTCAGCCCTTCAATCCCAGACCCACAGTCAGAGCTCATCCCAGAGCTCGTCCCAGAGCTCGTCCCAGAGCTCGTCCCAGTGCAGTAACCACTACCCCCACACTACCACCGCCACCTCAGGTCTTCAGCCCCATTCTCAGTCCCAATCTCACAGCCAGAACTTTAGCCACATCCAGGGCCCTGGCTTCTCCCCTGCTCTGCTCAGGAAGAAACAACACATGAGCATCCTGCCCAATCACTACAGATCTCTGGCCTGGATGTCTGAAGGTCAAGCGCCCCCTAGTGGTAGATCTATGAAGCACAGGGACACGGCTGCCAGAGAGGTGTTTGATAGGCAGGTGTTGGAGACAAGGCAAGCAGCATCGAATGGTCAGCACTCCATACACTCTATCCTAGTGAGACCAGACGCCCTCAAGAACAACACAGAGAAGCCCACCAAGTCAGTGCGGTTCCTGACCCAGCCTGATTCCCCTGCACCACGGCCCAGGACCACCTCCCTGCCCTCGGGTAGCCAGCCCCCCGCCAGTACCCGGCCTGGTCCACCTCCCCTGGAGGTCTGGGCTCCATCACTCACACTGGGGCGAGATGGGCCTGGGATCATCCTGAAAGAAGGCAAGGCTCCTGTTCTTAGGAAAGGTCTGGAGACAAACCCCTCTGATGCTTTGACTTCCAATCAGAAACCTACCTCTTCATTATCATCATCAGCACCATCTGCGTCCATGCAGTCCAGCAGCCCTAGCAGACACAGAGTAGCGATGTCCTACCAGGCCCAGACAGAGTCAGAAATGAGCCTGATGCAGGGTGAGCCTGTCCTGCTTCATAGACATCGGCCTGACGGACGGGTTCTGCTCACCCAGGAGAGCAGTGGCCACACGGGCCTCTTCCATAGCAGTGTTCTACAGTTCCTAGACCGGTTCAGTTGACGGCCTGTAGTGTTTAGTTATTATAGGTGTGTTtttcacatagaaatagaatgactagaatgggGGAAGCTCCTTAGAACGCGACAATTTGATGTGCAACTCATAcactcatgggtacactcaatATGGCCGCCGGCCCACCCCATCACGTGACGTTGACTTGAAAAGGAATGTCCATTCTAgaaattctatttctatggatcTCCACCTGTTGACACTGCCAAACGAGATGCCAAATCTGTGGaagagtgtgcgtgtgtatttTTATGTGTGTTgaaaataatatattatattactgCCATATAGTGACCAAAATGCAAAGGGAAACAAGTTTCCCCCTTGAGATTCCTTGGACCTGTTTTAAACTGTAGACAGATAATTATAAGGTTCTGAGATATATTTGTGTATATGTTGATGTGCAGAAGCATGAGTTGCACATAGATCTACTGCATACAGTTATTTTTACCAATCCGTTGCACAAAACCACCTCAGACCAATGTTTTGCATAAAGATTGAGTGTTTTCTTTATTCAAGAGCTAAAGGACACACTGGTCAGTGCCTTTGCAAAGCCCGCAGAGTCTAGAtttgaaaaacaacaacagtGCTTTTACCAGAGGCTAAATGTATATTAAGTGATGATCATATAGTGGTAATAAACAATGCTTTCGTCAACTATAGCATGTGTTTGTTACATTCTCAACATGATTTTGCTGAATAACTGCACACCCATGTTATGTATCAGACTTTTCTGATAAGAGACACACATGTCCTCTAAGGGATTCTCCTTCTCTGCTCTTTGAGTgctgaaaataaataatttatg

Function

NR:

description
SH3 domain-containing RING finger protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970269.1 True 2439 mRNA 0.51 7 9883166 9894880

Neighbor

gene id symbol gene type direction distance location
LOC110504540 LOC106604222 coding upstream 101464 9781057 ~ 9781702 (+)
kctd16a LOC105025951 coding upstream 154740 9726996 ~ 9728426 (+)
LOC110504549 LOC106612225 coding upstream 245004 9622482 ~ 9638162 (+)
LOC110504547 LOC106612224 coding upstream 260772 9617432 ~ 9622394 (+)
LOC110504537 LOC100380717 coding upstream 265833 9603819 ~ 9617333 (+)
kif3a kif3a coding downstream 222 9895102 ~ 9949036 (+)
LOC110504371 LOC106612179 coding downstream 269702 10164582 ~ 10393419 (+)
nlgn3a nlgn3 coding downstream 673999 10568879 ~ 11002218 (+)
LOC110504370 LOC106604240 coding downstream 1152612 11047492 ~ 11050052 (+)
plp1a LOC106612194 coding downstream 1172684 11067564 ~ 11085042 (+)
G2249911 NA non-coding upstream 29960 9749026 ~ 9853206 (+)
G2249928 NA non-coding upstream 99354 9782714 ~ 9783812 (+)
G2249847 NA non-coding upstream 224315 9654198 ~ 9658851 (+)
G2249823 NA non-coding upstream 298585 9584322 ~ 9584581 (+)
G2249776 LOC106612227 non-coding upstream 312274 9560115 ~ 9570892 (+)
G2250253 NA non-coding downstream 63237 9958117 ~ 9958353 (+)
G2250262 NA non-coding downstream 72742 9967622 ~ 9991537 (+)
G2250264 NA non-coding downstream 74147 9969027 ~ 9991233 (+)
G2250265 LOC105941376 non-coding downstream 80993 9975873 ~ 9976191 (+)
LOC110504554 LOC106604229 other upstream 280214 9600078 ~ 9602977 (+)
G2249775 NA other upstream 325699 9481680 ~ 9557467 (+)
G2249785 LOC106604237 other upstream 396244 9486245 ~ 9486922 (+)
G2249418 LOC106612241 other upstream 771844 9106708 ~ 9111322 (+)
G2249058 NA other upstream 1048791 8831981 ~ 8834375 (+)
G2250462 NA other downstream 334040 10228920 ~ 10229999 (+)
G2251174 NA other downstream 1301720 11196600 ~ 11199436 (+)
G2251181 NA other downstream 1318446 11213326 ~ 11213968 (+)
G2251155 ogt other downstream 1321795 11216675 ~ 11295004 (+)
G2252269 NA other downstream 2324880 12219760 ~ 12225495 (+)

Expression


Co-expression Network