LOC110510766 (LOC106604302)


Basic Information

Item Value
gene id LOC110510766
gene name LOC106604302
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 12493203 ~ 12539462 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969625.1
TGACCGCTAGAGGGCAGCTGTACACCAGGAGTTTTCCCTCCCCCCTCGTTGTCGAAACAACAAACCCTACTACGGAGCAAGTGGCGGGGTGAAACCGAGAGAGCGTCCAAAACCGCCTCTGACCGCCAGTTTCAAACTCATTTGCGGAAATCGTGGTTATATCAAAACAGGAACAGATAGCGACTCAACAAAGCAGTGACTCGTTTGGAAATAAATTGAATAACGGGGTCCTACGCTACCTTGTGGACACTGAGGATCTGAGGTCTGTTCTTATTTCAGTTGGATCAGACATGTTAGAGAAATGATAGCGGCACCAGAGTTACCGTCGGAGTTCCACTATCCTCAGGATACGGACACCCGTTTCTCCTCAGACACAGACTTCTCTGAGGCTCCTGATGTCAGTATCAACCCAACTAAAGGAAAGGGGGGTAAGAAGGGGAAGAAGGTGACAGGAGAGAAGGGTAAAGGAGCAGGGAGGATGAACGGCCACTACCAGGAGAATGGCATGGAGAACCTAATGCTGTTTGAGGTTGTCAAGATGGGCAAGAGCgccatgcagTCTGTGGTGGATGACTGGATTGAGGCGTATAAAACCGACAGGGACATGGCTCTGCTAGACCTGATCAACTTCTTCATCCAGTGTTCTGGCTGTAAAGGAGTGGTCAGTGGAGAGATGTTCCGAAACATGCAGAACTCTGAGATCATCAGGAGGATGACAGAGGAGTTTGACGAGGACAGCGGAGACTACCCTCTGACCATGGCAGGTCCGCTGTGGAAGAAGTTTAAGGGTAGTTTCTGTGAGTTCATTGCTGTCTTGGTGAGACAGTGTCAGTACAGCATCATCTATGACGAGTACCTCATGGACACGGTCATATCGCTCCTCACCGGACTGTCGGACTCACAGGTCCGAGCCTTCAGGCACACCAGCACACTGGCAGctatgAAACTGATGACAGCCCTGGTGAATGTAGCTCTGAACCTGAGCATCAACATGGACAACACACAGCGGCAGtacgagacagagagaaacaagatGGTCGCTAAGAGAGCCAACGACCGGCTGGAGCTACTGCTGCAGAAACGCAAAGAGCTTCAAGAAAATCAGGATGAAATTGAGAACATGATGAATGCTATATTCAAGGGTGTGTTTGTACACAGATATCGTGATGCCATAGCCGAGATCAGAGCTATCACTATAGAGGAGATAGGAATGTGGATGAAGCTCTACAGTGACGCCTTCCTCAACGACAGCTACCTGAAATACGTAGGCTGGACCATGCATGacaagCAAGGCGAGGTGCGTCTGAAATGTTTGACAGCGCTGCAGGGTCTCTACTACAACAGAGAACTGAACACCAGACTGGAGCTGTTCACCAGCCGCTTCAAGGACCGCATCGTCTCCATGACTCTAGACAAGGAGTACGATGTCGCAGTACAAGCAATTAAACTGCTCACTCTGGTACTACAtagtaCAGATGAGGTACTGAGCCCGGAGGACTGTGAGAGCGTCTATCACCTGGTCTACTCCGCCCACCGACCGGTCGCCATAGCAGCCGGGGAGTTCCTCTTCAAGAAACTGTTCAGTACGCGGGAGCCGGAAGAGGAGGGCGCCCccaagaggagaggaagacaaagCCCCAACGCCAACCTCATCAAAACTACTGTTTTCTTCTTCCTGGAGagcgagCTCCATGAGCACGCTGCGTACCTGGTGGACTCTCTGTGGGAGAGTGGAGCAGACCTGTTGAAGGACTGGGAGTGTATGACCAGCCTGCTACTGGATGACCCCGTGCCAGGGGAGGAAGccctgacagacagacaggagacggCTCTCATAGAGATAATGCTGTGTACGGTGCGCCAGGCTGCAGAGTGCCACCCACCCGTAGGCCGCGGAACCGGGAAGAGGGTGATGACAGCGAAGGAGAAGAAGACCCAGCTAGATGACAGGACCAGGATGACAGAGCTGTTTGCTGTGGCATTGCCTCCTCTGCTGGCCAAATACTCCATAGATTCAGAAAAGGTGACCAACCTGCTGCAGCTCCCTCAGTTCTTTGACCTGGATATCTACACCACAGGACGACTAGAGAAGCACTTGGAGGCGTTGCTGCGTCAGATCAGGGAGATCgtggagaaacacacagacacagaggttCTGGAGGCGTGCTCGAAGACCTACCACGCTCTCTGCAACGAGGAGTTCACCATCTTTAACAGAGTGGACATCGCCAGGTCACAGTTGCTCGATGAACTGGTGGACAAATTCAACAGACTGCTGGAAGACTTCTTACAAGAGGGTGAAGagcctgatgatgatgatgcctaCCAGGTCCTGTCTACTCTCAAGAGAATCACTGCCTTCCACAAtgcCCACGACCTGTCCCAGTGGGATCTGTTCAGCAGTAACTTCAAGTTGCTCAACACGGGCATTGAGAACGGAGACATGCCAGAGCAAATAGTGGTCCATGCTCTACAGTGTACCCACTACGTTGTCCTGTGGTACTTGGCCAAGGTCTCAGAGGGCAGCCACAGAAAGGAGGACATGGTGAGCCTGAGGAAACAGATGCGGATGTTCTGTCTGATGTGTCAACGTTACCTCACCAACGTCAACACAACCGTCAAGGAACAGgcgTTCACCATCCTGTGTGATGTGTTGCTAGTCTTTAGTCATCAGATGGTCTCAGGCGGCAGAGAGCAGCTGGAACCGCTGGTCTACAGTCCTGATGACTCGTTACAGACAGAACTACTGTCCTTCATACTGCACCATGTGTTTATAGACCAGGACGATGACAACGGcagcacagATGGCCAGCAGGATGACGAGGCAGCGAAGATAGAAGCTCTTCACAAGAGACGTAACCTCCTGGCAGCCTACTGTAAACTTATCATATATAACGTAGTAGAGATGAACACTGGAGCTGACATCTTTAAACAGTACATGAGGtATTATAATGACTATGGTGACATCATCAAGGAGACCATGTCTAAGACCAGACAGATAGACAAGATCCAATGTGCCAAGACACTCATCCTCAGTCTACAacagTTGTTCCATGAGATGATGTCAGAGTTGGGGACAGGATTTGACCGCTCGTCCTCAGCGTTCTGTGGGATCAAGGAGCTGGCCAGACGTTTCTCTCTCACCTTTGGTCTGGACCAGGTGAAAACACGAGATGCTATCGCCATGCTGCACAAGGATGGTATAGAGTTTGCGTTTAAGGAGCCCAGTCCCCAGGGAGAAGGAAACCCTCCTCTTCACCTGGCCTTCCTAGACATCCTCTCTGAGTTTTCCTCCAAACTAATGAGGCAGGACAAGAGGACTGTTCACATGTATCTGGAGAGGTTCATGACCTTCCAGATGGCCCTCCAGAGAGACGACTGCTGGCTACCGCTCATCTCCTACAGGAACTCCCTGCAGGCCGGCGGGGACGATGACACCATGTCTGTTGTCTCCGGCTACTCCTCCAGAGGGTCGTCGGTCAGATCCAAGAAGACCAAGGCTGCTACTCCCACTGCTACTGTCGCTGCAGCCAAGAGGAGACTTCCTGAAGtggaggagagcagtagcagcagtgccGATATGTCGTGGCAGCACCAGAGCATGCAGACTCCAGTGATGATGCCCTCCCCCCACCTCACCTCTACCATGATGAGAGGACCAGGGGACATGAGGGGGGAGGCCAAACGGGGGAGAGACGACAGCTATATAGGAGTGTACGCCCTCCCTTCAGACTCCCAGCAGCAGCCACACCCTCACACACTCCCCCAAACACCTCAACTCCACCAGACACCCATCGACTACAATACCCAGGTGACGTGGATGCTGGCTCAAAGGCAGCAGGAGGAGGTTCGCCAGCAGCAGGAGAGGGCCATGAACTACGCCAAGCTCAGGACCAACCTGCAACAGGCcattcggcGTGGTACAGGGCtgatggaggaggatgaggagcctATCGTAGAGGACGTGATGATGTCATCAGAGGGTCGTATGGAAGACCTCAACGAGGGCATGGACTTTGACACCATGGACATCGACCTGcCCCCCTctaagaacaggagagagagatcagagctgAAACCAGACTACTTTGACCCTGGTTCCATCATGGATGAGTCTGTCCTTGGAGTGTCCATGTTTTAAAACTGGTATTTGTCGACGAAGAAGAGAGGCGTACTGTATTTATGGAGACGTTAAGCTGACGATCAGAAGTCTTCTCTGGTTTATCCTCCATGGTCTAACACACAGTGTTGCTCGCTCAGAGGGGACTGAAtgaaaacaaaatactttttatAATCCTTGGGTAAGCTTTCACCTTTCAGCTAGTGGCCAACCAGTTCCAAACCTAGAAGAATCCTCCAGACGCTGAGTCTTGGTCTGAAGGGAGTTCTGTAATTCTACTGCGTTTTATTTTTCTTCCAAATGGAGATGGAATGACCTGTCCTCTAACCCTCTCTATGCTAGTATAGTGAGTAACCCGGTGCGGTGTAGTCATTTAGACACAGATTGTTAGTAGGAAAGGTAGCTAGCTGTGGTAGAAGTGGATGGACTTGGTCTTAATGCTAGTTTCAGTTTTTTTTCCTTTCCCCCATGTTGGACTGTCAGTAGAATCTGTTGGTTCTGTGGTTGTGATGACGACGACTGCTGGTGGTTGTTGGTGACCTGTTGAATAGATCAGCTGTAAGAGTCATGGATGTAGCAACACACATCCAACCGTTTTCCATGTGCAGAGTCCTTTATGCGAAAGGAGTAGAAATAACGCCACTGTCGTACATCCTTCAGGTTAGTTTCTGTCAACGTTTGGACCAGAAGGTCTGGCCGTCATATCCAACTGTGTGTGGGTAGTGTTTCTATTCCGTGGTTGTTGAATACAGTCTGAGGACCCCGGGAGTTGCTGTGAAGAGGCCCAGGGTGCgtctcaaaagtagtgcactatatagggaatagggctctggtctaaagtagtgcactatatagggaatagggctctggtctaaagtagtgcactatatagggaatagggctctggtctaaagtagtgcactatatagggaatagggctccggtcaaaagtagtgcactatatagggaatagggtgccatttgggacaaagaccCAGTGTTTAACAAGGAACTAGGCTGCCGCACAAGTCCTGAAGCTTACCCAAAGATTTGGATCCTTCTCCCTATCTGAAGAGACTACTCTCCCCGACGGACAGCGAGGTGACCTTCTCTCTGGTAGTGCCGCCACTGTGCTGACTCAGAGACAAGCAAGCAGCATGTTAATAGACAGAAAATCCAGCATATTTAGTGTTGAAATGGCTATCTCTAAATTTTAAATAAAGTTATATATGAATCGGTGCTGATTTTCTAACTGtgcttttttaaattaaaatgttcaACATAAGTTAAGGTTTCATAAATGTGTAAAACTGTTTAAAAAGGAAAGCATGTGTAGTCATGTGAGGAGGAAGATTTTTACATTTCTATTTCTGTTTTTCTTCGTCTTAATGTTTTGGGGTttctacctctctttttgttgtttttcctACGTGTAAATTAGTTTGGATAAGACTCATTATGAAAGAAATAAATGTGACTTGTGAAATATCAGCTTTAAGGTTTTCACCATCAACATGAGTAATAATAATGTCCTGTTGCGCAACGCCACCATATAAAACTGTATAGAGAACTTAAAGCCAGTCATTATATTCCTATAGAAAGGTTGTTGTtttcattccaaatggcaccctggtgCCCTCACCGGGCCAAATattccctatgggacctggtcaaaagtagtgcactgtatagggaatagaggtgccatttgggacagttcTCAACAGCAGCAGCACTCTGGCAGCTAGACAAAGCTTACATGTGACATGAACTATTATGTCGTCCATAAGTTTTAatgaaatgttttgtctactgaggtAAATCTATCTACTTGGTAATCATTCCATGCCTGGGCCTTAAACATGCAGTAATGGAAGGAAATCAACTGCCCTGTCTAATTAACTGCCCCTAGCCCCATATAAACAGTATTGCTAGAATATAATTGCTCTGGTTTAAGTGTAGACACCCCCCCCCACTCACTCTAGTAATTCTATGCCTCTACCCCTAGGCACCTGTGGATATCTGATAGGAATAGATAAGTAAGGTGTATCCAATTTGGCTTCATCCCAACTAGTTTTATCGGGGAGAAGGTGATACTACTACCCATCAAATCACTGCAGATTTACACTAGCACCttggggttagggctggggtAGCCTCGGAAAGCCTAGGGGTTAGGGCCGGGGTAGCCTCGGAAAGCCTAGGGGTTAGGGCCGGGGTAGCCTCGGAAAGCCTAGGGGTTAGGGCCGGGGTAGCCTCGGAAAGCCTAGGGGTTAGGGCCGGGGTAGCCTCGGAATGCCTAGGGGTTAGGGCCGGGGTAGCCTCGGAATGCCTAGGGGTTAGGGCCGGGGTAGCCTCGGAATGCCTAGGGGTTAGGGCCGGGTTAGCCTCGGAATGCCTaggggttagggctggggtaACCTCGGAAATCTTCTGTAGATGACATTTGGAAGGATGTCCTCGTGAGACTAGAGTTTAGGgtgctaggggttgtttctggacaggtcCTAAATCGTTTTCTCTTACTAATCCTCTTCCGTGTCAAGAGGTAGCCATGAAAGGTGATTATTGGGGTTGTTATAACGACAGAAAACAGATGGTCCAGATGTGATGTCGGTGAAGTAGATACAGGCAGCCTGTGTGTTTtacctaattattattattattattattattattattattattattatatgtaaGTAAATATTTTGGAGTAAAAATGACTGTGGCTTTTGTTTTGTCACTTACTACCACTACATTGGTATAGTCCTTTATTTGAGCCTTCCTGTATATAAAACAAACATCAAGCTTTATTTTCATTTGTTGTGTTTTTCCTTTTTGGCCATTTTATGTATGTGTTGAATTTTctcatatatataatatacaaacacacacacacttccgcgCTGTTTGTTCCCTATCCTATTACCACTCCCTCTCAGATTTGTACTTGCCTGGAGACAGTCACTTTTTTGAATAAAAGTAAACCAACTCGA

Function

NR:

description
PREDICTED: cohesin subunit SA-2-like

GO: NA

KEGG:

id description
K06671 STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969625.1 True 7116 mRNA 0.48 32 12493203 12539462
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110504586 LOC105024434 coding downstream 7109 12328961 ~ 12486094 (-)
LOC110504289 hc127 coding downstream 338570 12143838 ~ 12154633 (-)
LOC110504578 LOC106604272 coding downstream 371713 12114414 ~ 12121490 (-)
LOC118946085 LOC106612186 coding downstream 458405 12031779 ~ 12034798 (-)
LOC110504577 LOC106605487 coding downstream 533057 11948559 ~ 11960146 (-)
LOC110504588 LOC106612162 coding upstream 6547 12546009 ~ 12555827 (-)
LOC110504591 NA coding upstream 37661 12577123 ~ 12595742 (-)
LOC118945995 NA coding upstream 98905 12638367 ~ 12639122 (-)
LOC110504594 msx2 coding upstream 130644 12670106 ~ 12673028 (-)
LOC110504372 LOC106612156 coding upstream 163305 12702767 ~ 12716735 (-)
G2252691 NA non-coding downstream 12832 12480114 ~ 12480371 (-)
G2252689 NA non-coding downstream 15182 12477723 ~ 12478021 (-)
G2252688 NA non-coding downstream 18549 12474340 ~ 12474654 (-)
G2252683 NA non-coding downstream 35524 12457212 ~ 12457679 (-)
G2252682 NA non-coding downstream 36297 12456565 ~ 12456906 (-)
G2252781 NA non-coding upstream 25727 12565189 ~ 12565874 (-)
G2252783 NA non-coding upstream 30641 12570103 ~ 12570352 (-)
G2252790 NA non-coding upstream 36257 12575719 ~ 12575942 (-)
G2252799 NA non-coding upstream 59087 12598549 ~ 12598840 (-)
G2252687 NA other downstream 21923 12469334 ~ 12471280 (-)
LOC110504560 NA other downstream 933552 11550643 ~ 11559725 (-)
LOC110504562 LOC106604327 other downstream 978005 11511832 ~ 11537153 (-)
G2251818 LOC106612215 other downstream 1133693 11356212 ~ 11359510 (-)
ogt.1 LOC106604253 other downstream 1238527 11214371 ~ 11254712 (-)
G2253147 LOC106612165 other upstream 434609 12974071 ~ 12976617 (-)
G2253603 NA other upstream 555338 13094800 ~ 13095093 (-)
G2253646 LOC106612146 other upstream 802200 13281606 ~ 13345200 (-)

Expression

LOC110510766(LOC106604302) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC110510766(LOC106604302) Expression in each Bioproject

Bar chart with 21 bars.
LOC110510766(LOC106604302) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network