Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110504656 |
| gene name | psd2 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050571.1 |
| NCBI id | CM025858.1 |
| chromosome length | 44108611 |
| location | 16920549 ~ 16990970 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| psd2 | Predicted to enable phospholipid binding activity. Acts upstream of or within heart development; larval locomotory behavior; and somite development. Predicted to be located in ruffle membrane. Orthologous to human PSD2 (pleckstrin and Sec7 domain containing 2). |
| description |
|---|
| PH and SEC7 domain-containing protein 2-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036969942.1 | False | 5507 | mRNA | 0.50 | 15 | 16920549 | 16990970 |
| TU2582391 | True | 1010 | TUCP | 0.55 | 3 | 16975599 | 16990836 |
16,870,000
16,880,000
16,890,000
16,900,000
16,910,000
16,920,000
16,930,000
16,940,000
16,950,000
16,960,000
16,970,000
16,980,000
16,990,000
17,000,000
17,010,000
NC_050571.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110504389 | LOC106604398 | coding | downstream | 9744 | 16856756 ~ 16910805 (-) |
| LOC110504664 | LOC106594957 | coding | downstream | 81707 | 16831665 ~ 16838842 (-) |
| LOC110504390 | LOC106604393 | coding | downstream | 125090 | 16791450 ~ 16795459 (-) |
| LOC110504653 | LOC106612100 | coding | downstream | 137001 | 16719521 ~ 16819520 (-) |
| LOC118946009 | NA | coding | downstream | 184960 | 16733843 ~ 16735589 (-) |
| LOC110504672 | cxxc5 | coding | upstream | 58448 | 17049418 ~ 17054726 (-) |
| LOC110504684 | UBE2D2 | coding | upstream | 64033 | 17055003 ~ 17061580 (-) |
| LOC110504690 | LOC106612110 | coding | upstream | 165358 | 17156328 ~ 17176740 (-) |
| mbnl3 | LOC106612109 | coding | upstream | 188953 | 17179923 ~ 17265437 (-) |
| hs6st2 | LOC106612108 | coding | upstream | 275171 | 17266141 ~ 17272609 (-) |
| G2257495 | NA | non-coding | downstream | 1150 | 16919146 ~ 16919399 (-) |
| G2257492 | pura | non-coding | downstream | 2387 | 16912770 ~ 16918162 (-) |
| G2257484 | NA | non-coding | downstream | 30756 | 16887925 ~ 16889793 (-) |
| G2257475 | NA | non-coding | downstream | 58196 | 16861889 ~ 16862353 (-) |
| G2257466 | NA | non-coding | downstream | 75043 | 16845072 ~ 16845506 (-) |
| G2257543 | NA | non-coding | upstream | 7213 | 16998183 ~ 16998830 (-) |
| G2257550 | NA | non-coding | upstream | 14081 | 17005051 ~ 17005333 (-) |
| G2257553 | NA | non-coding | upstream | 33203 | 17024173 ~ 17025248 (-) |
| G2257587 | NA | non-coding | upstream | 107540 | 17098510 ~ 17101535 (-) |
| G2257590 | NA | non-coding | upstream | 141116 | 17132086 ~ 17134970 (-) |
| LOC110504385 | gria1 | other | downstream | 1277429 | 15627780 ~ 15813695 (-) |
| G2255363 | NA | other | downstream | 1646941 | 15272878 ~ 15273608 (-) |
| G2255168 | NA | other | downstream | 1809916 | 15110233 ~ 15110633 (-) |
| G2254275 | NA | other | downstream | 2820792 | 14099389 ~ 14099757 (-) |
| G2257651 | NA | other | upstream | 354916 | 17264357 ~ 17349631 (-) |
| cnot7 | LOC103366853 | other | upstream | 1054943 | 18036030 ~ 18047530 (-) |
| G2258072 | pdgfrl | other | upstream | 1161060 | 18152030 ~ 18158267 (-) |
| G2258118 | NA | other | upstream | 1239180 | 18230150 ~ 18230459 (-) |
| G2257515 | NA | non-coding | downstream | 28299 | 16946791 ~ 16947300 (-) |
