Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110504684 |
| gene name | UBE2D2 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050571.1 |
| NCBI id | CM025858.1 |
| chromosome length | 44108611 |
| location | 17055003 ~ 17061580 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ube2d2 | Predicted to enable ubiquitin conjugating enzyme activity. Acts upstream of or within negative regulation of smoothened signaling pathway. Predicted to be active in nucleus. Orthologous to several human genes including UBE2D2 (ubiquitin conjugating enzyme E2 D2). |
| description |
|---|
| ubiquitin-conjugating enzyme E2 D2 isoform 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036970516.1 | False | 1473 | mRNA | 0.45 | 7 | 17055003 | 17059914 |
| XM_021583456.2 | False | 1841 | mRNA | 0.46 | 7 | 17055003 | 17061580 |
| TU2582386 | True | 3158 | TUCP | 0.42 | 6 | 17055038 | 17061455 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110504672 | cxxc5 | coding | downstream | 277 | 17049418 ~ 17054726 (-) |
| LOC110504656 | psd2 | coding | downstream | 64033 | 16920549 ~ 16990970 (-) |
| LOC110504389 | LOC106604398 | coding | downstream | 144198 | 16856756 ~ 16910805 (-) |
| LOC110504664 | LOC106594957 | coding | downstream | 216161 | 16831665 ~ 16838842 (-) |
| LOC110504390 | LOC106604393 | coding | downstream | 259544 | 16791450 ~ 16795459 (-) |
| LOC110504690 | LOC106612110 | coding | upstream | 94748 | 17156328 ~ 17176740 (-) |
| mbnl3 | LOC106612109 | coding | upstream | 118343 | 17179923 ~ 17265437 (-) |
| hs6st2 | LOC106612108 | coding | upstream | 204561 | 17266141 ~ 17272609 (-) |
| gpc4 | LOC106612107 | coding | upstream | 211712 | 17273292 ~ 17335505 (-) |
| gpc3 | LOC106612042 | coding | upstream | 288329 | 17349909 ~ 17708831 (-) |
| G2257553 | NA | non-coding | downstream | 29755 | 17024173 ~ 17025248 (-) |
| G2257550 | NA | non-coding | downstream | 49670 | 17005051 ~ 17005333 (-) |
| G2257543 | NA | non-coding | downstream | 56173 | 16998183 ~ 16998830 (-) |
| G2257515 | NA | non-coding | downstream | 107703 | 16946791 ~ 16947300 (-) |
| G2257495 | NA | non-coding | downstream | 135604 | 16919146 ~ 16919399 (-) |
| G2257587 | NA | non-coding | upstream | 36930 | 17098510 ~ 17101535 (-) |
| G2257590 | NA | non-coding | upstream | 70506 | 17132086 ~ 17134970 (-) |
| G2257605 | NA | non-coding | upstream | 74411 | 17135991 ~ 17136355 (-) |
| G2257615 | NA | non-coding | upstream | 83455 | 17145035 ~ 17147773 (-) |
| G2257616 | NA | non-coding | upstream | 86477 | 17148057 ~ 17149255 (-) |
| LOC110504653 | LOC106612100 | other | downstream | 235483 | 16719521 ~ 16819520 (-) |
| LOC110504385 | gria1 | other | downstream | 1411883 | 15627780 ~ 15813695 (-) |
| G2255363 | NA | other | downstream | 1781395 | 15272878 ~ 15273608 (-) |
| G2255168 | NA | other | downstream | 1944370 | 15110233 ~ 15110633 (-) |
| G2257651 | NA | other | upstream | 284306 | 17264357 ~ 17349631 (-) |
| cnot7 | LOC103366853 | other | upstream | 984333 | 18036030 ~ 18047530 (-) |
| G2258072 | pdgfrl | other | upstream | 1090450 | 18152030 ~ 18158267 (-) |
| G2258118 | NA | other | upstream | 1168570 | 18230150 ~ 18230459 (-) |
| G2258266 | NA | other | upstream | 1306687 | 18368267 ~ 18368658 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| striped catfish (Pangasianodon hypophthalmus) | G114526 | NA | non-coding | NC_047601.1 | CM018547.1 | 13669791 ~ 13670109 (+) |
| bowfin (Amia calva) | AMCG00011560 | NA | misc | CM030133.1 | CM030133.1 | 32130494 ~ 32205554 (-) |
