Gene
RNA
| Item | Value |
|---|---|
| gene id | sorbs2b |
| gene name | sorbs2 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050571.1 |
| NCBI id | CM025858.1 |
| chromosome length | 44108611 |
| location | 18487763 ~ 18570284 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| sorbs2 | Enables identical protein binding activity. Predicted to be involved in Notch signaling pathway and cell growth involved in cardiac muscle cell development. Predicted to act upstream of or within acetylcholine receptor signaling pathway and regulation of skeletal muscle acetylcholine-gated channel clustering. Predicted to be located in synapse. Predicted to be active in plasma membrane. |
| description |
|---|
| sorbin and SH3 domain-containing protein 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036970460.1 | False | 7967 | mRNA | 0.53 | 28 | 18487763 | 18570284 |
| XM_036970455.1 | False | 8053 | mRNA | 0.53 | 29 | 18487764 | 18570284 |
| XM_036970457.1 | False | 8137 | mRNA | 0.53 | 29 | 18487764 | 18570284 |
| XM_036970458.1 | False | 7895 | mRNA | 0.54 | 28 | 18487764 | 18570284 |
| XM_036970459.1 | False | 7979 | mRNA | 0.53 | 28 | 18487764 | 18570284 |
| XM_036970461.1 | False | 7942 | mRNA | 0.53 | 28 | 18487764 | 18570284 |
| XM_036970462.1 | False | 7933 | mRNA | 0.54 | 27 | 18487764 | 18570284 |
| XM_036970463.1 | False | 7515 | mRNA | 0.53 | 28 | 18487765 | 18570284 |
| XM_036970469.1 | False | 6705 | mRNA | 0.53 | 26 | 18487765 | 18570284 |
| XM_036970464.1 | False | 7118 | mRNA | 0.52 | 27 | 18487766 | 18570284 |
| XM_036970465.1 | False | 6960 | mRNA | 0.52 | 26 | 18487766 | 18570284 |
| XM_036970466.1 | False | 7121 | mRNA | 0.52 | 27 | 18487766 | 18570284 |
| XM_036970467.1 | False | 7195 | mRNA | 0.52 | 28 | 18487766 | 18570284 |
| XM_036970468.1 | False | 7037 | mRNA | 0.53 | 27 | 18487766 | 18570284 |
| XM_036970470.1 | False | 6998 | mRNA | 0.53 | 25 | 18487766 | 18570284 |
| TU2583385 | True | 1980 | lncRNA | 0.39 | 3 | 18567470 | 18570276 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110504716 | mtnr1a | coding | upstream | 129182 | 18325631 ~ 18358581 (+) |
| LOC110504394 | fat1 | coding | upstream | 179994 | 18236968 ~ 18307769 (+) |
| LOC118946046 | NA | coding | upstream | 258503 | 18226410 ~ 18229260 (+) |
| pdgfrl | pdgfrl | coding | upstream | 329496 | 18149487 ~ 18158267 (+) |
| slc7a2 | slc7a2 | coding | upstream | 338402 | 18115165 ~ 18149361 (+) |
| LOC110504719 | pdlim3 | coding | downstream | 3243 | 18573527 ~ 18597168 (+) |
| LOC110504723 | lrp2bp | coding | downstream | 30563 | 18600847 ~ 18605164 (+) |
| enpp6 | enpp6 | coding | downstream | 157145 | 18727429 ~ 18752805 (+) |
| abhd18 | abhd18 | coding | downstream | 313157 | 18883441 ~ 18889234 (+) |
| rnf103 | rnf103 | coding | downstream | 319716 | 18890000 ~ 18894740 (+) |
| G2258324 | NA | non-coding | upstream | 14960 | 18472603 ~ 18472803 (+) |
| G2258273 | NA | non-coding | upstream | 16427 | 18381215 ~ 18471336 (+) |
| G2258307 | NA | non-coding | upstream | 48768 | 18436690 ~ 18438995 (+) |
| G2258251 | NA | non-coding | upstream | 126502 | 18360790 ~ 18361261 (+) |
| G2258436 | NA | non-coding | downstream | 87150 | 18657434 ~ 18657726 (+) |
| G2258447 | NA | non-coding | downstream | 116309 | 18686593 ~ 18689652 (+) |
| G2258479 | NA | non-coding | downstream | 193255 | 18763539 ~ 18812060 (+) |
| micu3b | LOC106612036 | other | upstream | 476968 | 17971133 ~ 18010807 (+) |
| G2256867 | NA | other | upstream | 1041833 | 17445566 ~ 17445930 (+) |
| G2256788 | NA | other | upstream | 1137418 | 17291119 ~ 17350345 (+) |
| G2256591 | LOC106594957 | other | upstream | 1653919 | 16828805 ~ 16833844 (+) |
| G2256563 | LOC106612100 | other | upstream | 1709738 | 16776894 ~ 16778025 (+) |
| LOC110504399 | LOC106611959 | other | downstream | 2017407 | 20587691 ~ 20876250 (+) |
| G2261028 | NA | other | downstream | 2376449 | 20946733 ~ 20947525 (+) |
| G2261334 | NA | other | downstream | 2872372 | 21442656 ~ 21443007 (+) |
| G2261414 | fchsd1 | other | downstream | 3181531 | 21751815 ~ 21772260 (+) |
| LOC110504779 | LOC106612009 | other | downstream | 3377540 | 21947801 ~ 21953127 (+) |
| G2258379 | NA | non-coding | upstream | 13352 | 18553388 ~ 18554118 (+) |
| G2258364 | NA | non-coding | upstream | 42437 | 18523667 ~ 18525033 (+) |
| G2258355 | NA | non-coding | upstream | 59909 | 18505835 ~ 18507561 (+) |
