LOC110504719 (pdlim3)


Basic Information

Item Value
gene id LOC110504719
gene name pdlim3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 18573527 ~ 18597168 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583509.2
agagagagagagagagagagagagagagagagacagagagagcgacagagagagagacagagcgagagagagagagagagagagagagagagagagagagagagtgtgtgtggagggagagaTTAGCCTACTGCTGCTGTGACTGCTGCTCTACCAGAAACAGGGTGACAGCTAGGAAGATAATGCCCCAGAATGTGGTCCTGGATGGGCCAGCCCCTTGGGGCTTCAGGCTCAATGGAGGGAAGGACTTCAACCAGCCCCTGACCATCACCAGGGTGACGCCTGGCAGCAAAGCCTCGCTGGCCAACCTGTGCCCCGGTGACATCATCCTGGCCATAGAGGGTGTGAGTACAGAGTGCATGACTCACAGCGAGGCCCAGAACAAGATCAAAGACCCTGCCTCCCGCCTCGGCCTCAAGATTGAGAGGCCTGAGACCAAAATGTGGTCCCCCCAAGTCACAGAGGATGGGAAAGCAAACCCATTCAAGCTCAATTTAGAGGCAGAACAACAAGAGTTGAAACCTATCGGTACAGGTCACAACCGACGGGCCCAGCCCTTCATGGCTGCGGCCACCATAGACAACGGACGCCAGGTGGTGAGTTCCTCCTACAACACTCCCATAGGCCTCTACTCCTCAGGCAACATCCAGGACGCCCTGCACGGACAGCTCCCAGGCCTTGTTCACGATAAGCATCAGGGTGGTAAGACACTGTCCTCCATTAAGGAGTCTCATGTGtaccggatgctccaggatgacCAGGATAGGCCACATGAACCACGTCAGTCAGGCTCCTTTAAGGCTCTGCAGGAACACGTGGAGACTGATGGAGCAAAGCCGTTGATTACTAGAAGTGTAAGAGCTCCGGTGACAAAGCATCCTACACCTGCGGGATCGCTACAGAAACTACCCCTCTGTGACAAGTGTGGAAACGGCATAGTAGGCACAGTGGTGAAGGCCAGAGAAAAGTTCCGCCACCCTGGATGTTTCGTGTGCTCCGACTGCAAAGTCAACCTGAAGCAGAGGGGCTACGTCTTTGTGGAGGGGCAGCTGTACTGCGAGACCCACGCCCGCGCCCGGACGATACCTCCAGAGGGACACGATGTCATCACCGTTTACCCCACGGCTTGAGACCAGTGGACTGGGAAATGCACAGACCTGTCCAAATGGAGCAAGAACTGTAATTTGCCACTCCCCTTCTCATACAGAGTATTTCAGGACAAAATACatgatatatgatatatatatatatatatatat
>XM_036969874.1
agagagagagagagagagagagagagagacagagagagcgacagagagagagacagagcgagagagagagagagagagagagagagagagagagagagagtgtgtgtggagggagagaTTAGCCTACTGCTGCTGTGACTGCTGCTCTACCAGAAACAGGGTGACAGCTAGGAAGATAATGCCCCAGAATGTGGTCCTGGATGGGCCAGCCCCTTGGGGCTTCAGGCTCAATGGAGGGAAGGACTTCAACCAGCCCCTGACCATCACCAGGGTGACGCCTGGCAGCAAAGCCTCGCTGGCCAACCTGTGCCCCGGTGACATCATCCTGGCCATAGAGGGTGTGAGTACAGAGTGCATGACTCACAGCGAGGCCCAGAACAAGATCAAAGACCCTGCCTCCCGCCTCGGCCTCAAGATTGAGAGGCCTGAGACCAAAATGTGGTCCCCCCAAGTCACAGAGGATGGGAAAGCAAACCCATTCAAGCTCAATTTAGAGGCAGAACAACAAGACCTGGGCTACTTTGAACACAAGTTTAACGTCAGGCCTAAGCTCTTCTTACCTGCAGGCCAAAGCGAGTGCCCTCCTCCGCAAGGCCTGATGGGAAATGGCCATCAGACGGTGGTCACCCTCTCCCCCCCTGACCCTCCCCTGTCTGCTAACTCCGGCACAGACCAACCCCTGGCCCCCAGTGCTCAGTATAACTCCCCCATTAACCTGTACTCTGAGGCCAATGTCTCGGCCGCTCAACAGCTAGCTCAGGTCACCTCAGTAGAGGAACAGGTCCCTCTAAGTGGTAAGACACTGTCCTCCATTAAGGAGTCTCATGTGtaccggatgctccaggatgacCAGGATAGGCCACATGAACCACGTCAGTCAGGCTCCTTTAAGGCTCTGCAGGAACACGTGGAGACTGATGAGGCACAGTGGTGAAGGCCAGAGAAAAGTTCCGCCACCCTGGATGTTTCGTGTGCTCCGACTGCAAAGTCAACCTGAAGCAGAGGGGCTACGTCTTTGTGGAGGGGCAGCTGTACTGCGAGACCCACGCCCGCGCCCGGACGATACCTCCAGAGGGACACGATGTCATCACCGTTTACCCCACGGCTTGAG
>XM_036969873.1
gagagagagagagagagagagagagagacagagagagcgacagagagagagacagagcgagagagagagagagagagagagagagagagagagagagagtgtgtgtggagggagagaTTAGCCTACTGCTGCTGTGACTGCTGCTCTACCAGAAACAGGGTGACAGCTAGGAAGATAATGCCCCAGAATGTGGTCCTGGATGGGCCAGCCCCTTGGGGCTTCAGGCTCAATGGAGGGAAGGACTTCAACCAGCCCCTGACCATCACCAGGGTGACGCCTGGCAGCAAAGCCTCGCTGGCCAACCTGTGCCCCGGTGACATCATCCTGGCCATAGAGGGTGTGAGTACAGAGTGCATGACTCACAGCGAGGCCCAGAACAAGATCAAAGACCCTGCCTCCCGCCTCGGCCTCAAGATTGAGAGGCCTGAGACCAAAATGTGGTCCCCCCAAGTCACAGAGGATGGGAAAGCAAACCCATTCAAGCTCAATTTAGAGGCAGAACAACAAGACCTGGGCTACTTTGAACACAAGTTTAACGTCAGGCCTAAGCTCTTCTTACCTGCAGGCCAAAGCGAGTGCCCTCCTCCGCAAGGCCTGATGGGAAATGGCCATCAGACGGTGGTCACCCTCTCCCCCCCTGACCCTCCCCTGTCTGCTAACTCCGGCACAGACCAACCCCTGGCCCCCAGTGCTCAGTATAACTCCCCCATTAACCTGTACTCTGAGGCCAATGTCTCGGCCGCTCAACAGCTAGCTCAGGTCACCTCAGTAGAGGAACAGGTCCCTCTAAGTGGTAAGACACTGTCCTCCATTAAGGAGTCTCATGTGtaccggatgctccaggatgacCAGGATAGGCCACATGAACCACGTCAGTCAGGCTCCTTTAAGGCTCTGCAGGAACACGTGGAGACTGATGGAGCAAAGCCGTTGATTACTAGAAGTGTAAGAGCTCCGGTGACAAAGCATCCTACACCTGCGGGATCGCTACAGAAACTACCCCTCTGTGACAAGTGTGGAAACGGCATAGTAGGCACAGTGGTGAAGGCCAGAGAAAAGTTCCGCCACCCTGGATGTTTCGTGTGCTCCGACTGCAAAGTCAACCTGAAGCAGAGGGGCTACGTCTTTGTGGAGGGGCAGCTGTACTGCGAGACCCACGCCCGCGCCCGGACGATACCTCCAGAGGGACACGATGTCATCACCGTTTACCCCACGGCTTGAGACCAGTGGACTGGGAAATGCACAGACCTGTCCAAATGGAGCAAGAACTGTAATTTGCCACTCCCCTTCTCATACAGAGTATTTCAGGACAAAATACatgatatatgatatatatatatatatatatat
>XR_005041151.1
gagagagagagagagagagagagagagacagagagagcgacagagagagagacagagcgagagagagagagagagagagagagagagagagagagagagtgtgtgtggagggagagaTTAGCCTACTGCTGCTGTGACTGCTGCTCTACCAGAAACAGGGTGACAGCTAGGAAGATAATGCCCCAGAATGTGGTCCTGGATGGGCCAGCCCCTTGGGGCTTCAGGCTCAATGGAGGGAAGGACTTCAACCAGCCCCTGACCATCACCAGGGTGACGCCTGGCAGCAAAGCCTCGCTGGCCAACCTGTGCCCCGGTGACATCATCCTGGCCATAGAGGGTGTGAGTACAGAGTGCATGACTCACAGCGAGGCCCAGAACAAGATCAAAGACCCTGCCTCCCGCCTCGGCCTCAAGATTGAGAGGCCTGAGACCAAAATGTGGTCCCCCCAAGTCACAGAGGATGGGAAAGCAAACCCATTCAAGCTCAATTTAGAGGCAGAACAACAAGACCTGGGCTACTTTGAACACAAGTTTAACGTCAGGCCTAAGCTCTTCTTACCTGCAGGCCAAAGCGAGTGCCCTCCTCCGCAAGGCCTGATGGGAAATGGCCATCAGACGGTGGTCACCCTCTCCCCCCCTGACCCTCCCCTGTCTGCTAACTCCGGCACAGACCAACCCCTGGCCCCCAGTGCTCAGTATAACTCCCCCATTAACCTGTACTCTGAGGCCAATGTCTCGGCCGCTCAACAGCTAGCTCAGGTCACCTCAGTAGAGGAACAGGTCCCTCTAAGTGGTAAGACACTGTCCTCCATTAAGGAGTCTCATGTGtaccggatgctccaggatgacCAGGATAGGCCACATGAACCACGTCAGTCAGGCTCCTTTAAGGCTCTGCAGGAACACGTGGAGACTGATGGAGCAAAGCCGTTGATTACTAGAAGTGTAAGAGCTCCGGTGACAAAGCATCCTACACCTGCGGGATCGCTACAGAAACTACCCCTCTGTGACAAGTGTGGAAACGGCATAGTAGGCACAGTGGTGAAGGCCAGAGAAAAGTTCCGCCACCCTGGATGTTTCGTGTGCTCCGACTGCAAAGTCAACCTGAAGCAGAGGGGCTACGTCTTTGTGGAGGGGCAGCTGTACTGCGAGACCCACGCCCGCGCCCGGACGATACCTCCAGAGGGACACGATGTCATCACCGTTTACCCCACGGCTTGAGACCAGTGGACTGGGAAATGCACAGACCTGTCCAAATGGAGCAAGAACTGTAATTTGCCACTCCCCTTCTCATACAGAGTATTTCAGGACAAAATACatgatatatgatatatatatatatatatatacaagctGCACTGTGGATAGATAGGCCATACTACAGTGGCGTTCATCAACTTAACACCCTGAACTGAACATATCAATATCTGTGGACATTATGATGCAATTGTGAATTTGCTTATCACCGTCAAAAACGCAACCATTTATCTTTTTAAAAAGGAATATGTTTGTTATGCCTTGTGAATACCAACTGTGCCTTGTGATTTAAAGTTTTTTTTGAATATGTTACCATTGGTAATAAAAACAGAAGACAAACATA
>TU2583402
atatatatatatatatatatatatatatacaagctGCACTGTGGATAGATAGGCCATACTACAGTGGCGTTCATCAACTTAACACCCTGAACTGAACATATCAATATCTGTGGACATTATGATGCAATTGTGAATTTGCTTATCACCGTCAAAAACGCAACCATTTATCTTTTTAAAAAGGAATATGTTTGTTATGCCTTGTGAATACCAACTGTGCCTTGTGATTTAAAGTTTTTTTTGAATATGTTACCATTGGTAATAAAAACAGAAGACA

Function

symbol description
pdlim3 Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Predicted to be a structural constituent of muscle. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to act upstream of or within actin filament organization. Located in cytosol.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583509.2 False 1259 mRNA 0.54 7 18573527 18596812
XM_036969874.1 False 1111 mRNA 0.56 7 18573531 18596684
XM_036969873.1 False 1350 mRNA 0.54 8 18573532 18596812
XR_005041151.1 False 1600 mRNA 0.51 9 18573532 18597168
TU2583402 True 274 lncRNA 0.31 1 18596889 18597162
Loading

Neighbor

gene id symbol gene type direction distance location
sorbs2b sorbs2 coding upstream 3243 18487763 ~ 18570284 (+)
LOC110504716 mtnr1a coding upstream 214946 18325631 ~ 18358581 (+)
LOC110504394 fat1 coding upstream 265758 18236968 ~ 18307769 (+)
LOC118946046 NA coding upstream 344267 18226410 ~ 18229260 (+)
pdgfrl pdgfrl coding upstream 415260 18149487 ~ 18158267 (+)
LOC110504723 lrp2bp coding downstream 3679 18600847 ~ 18605164 (+)
enpp6 enpp6 coding downstream 130261 18727429 ~ 18752805 (+)
abhd18 abhd18 coding downstream 286273 18883441 ~ 18889234 (+)
rnf103 rnf103 coding downstream 292832 18890000 ~ 18894740 (+)
immt immt coding downstream 299731 18896899 ~ 18916061 (+)
G2258379 NA non-coding upstream 19409 18553388 ~ 18554118 (+)
G2258364 NA non-coding upstream 48494 18523667 ~ 18525033 (+)
G2258355 NA non-coding upstream 65966 18505835 ~ 18507561 (+)
G2258324 NA non-coding upstream 100724 18472603 ~ 18472803 (+)
G2258436 NA non-coding downstream 60266 18657434 ~ 18657726 (+)
G2258447 NA non-coding downstream 89425 18686593 ~ 18689652 (+)
G2258479 NA non-coding downstream 166371 18763539 ~ 18812060 (+)
G2258528 NA non-coding downstream 255197 18852365 ~ 18852909 (+)
micu3b LOC106612036 other upstream 562732 17971133 ~ 18010807 (+)
G2256867 NA other upstream 1127597 17445566 ~ 17445930 (+)
G2256788 NA other upstream 1223182 17291119 ~ 17350345 (+)
G2256591 LOC106594957 other upstream 1739683 16828805 ~ 16833844 (+)
G2256563 LOC106612100 other upstream 1795502 16776894 ~ 16778025 (+)
LOC110504399 LOC106611959 other downstream 1990523 20587691 ~ 20876250 (+)
G2261028 NA other downstream 2349565 20946733 ~ 20947525 (+)
G2261334 NA other downstream 2845488 21442656 ~ 21443007 (+)
G2261414 fchsd1 other downstream 3154647 21751815 ~ 21772260 (+)
LOC110504779 LOC106612009 other downstream 3350656 21947801 ~ 21953127 (+)

Expression

LOC110504719(pdlim3) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110504719(pdlim3) Expression in each Bioproject

Bar chart with 17 bars.
LOC110504719(pdlim3) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network