Gene
RNA
| Item | Value |
|---|---|
| gene id | polr1a |
| gene name | polr1a |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050571.1 |
| NCBI id | CM025858.1 |
| chromosome length | 44108611 |
| location | 18923789 ~ 18935024 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| polr1a | Predicted to enable DNA binding activity; nucleotidyltransferase activity; and zinc ion binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Acts upstream of or within embryonic viscerocranium morphogenesis; neural crest cell development; and rRNA transcription. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex. Is expressed in several structures, including alar plate midbrain region; digestive system; nervous system; pectoral fin musculature; and segmental plate. Used to study acrofacial dysostosis Cincinnati type. Human ortholog(s) of this gene implicated in acrofacial dysostosis Cincinnati type. Orthologous to human POLR1A (RNA polymerase I subunit A). |
| description |
|---|
| DNA-directed RNA polymerase I subunit RPA1 |
| id | description |
|---|---|
| K02999 | RPA1, POLR1A; DNA-directed RNA polymerase I subunit RPA1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021583528.2 | True | 5571 | mRNA | 0.52 | 32 | 18923789 | 18935024 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| immt | immt | coding | upstream | 7728 | 18896899 ~ 18916061 (+) |
| rnf103 | rnf103 | coding | upstream | 29049 | 18890000 ~ 18894740 (+) |
| abhd18 | abhd18 | coding | upstream | 34555 | 18883441 ~ 18889234 (+) |
| enpp6 | enpp6 | coding | upstream | 170984 | 18727429 ~ 18752805 (+) |
| LOC110504723 | lrp2bp | coding | upstream | 318625 | 18600847 ~ 18605164 (+) |
| st3gal5 | st3gal5 | coding | downstream | 1832 | 18936856 ~ 18950760 (+) |
| tmem129 | tmem129 | coding | downstream | 44175 | 18979199 ~ 18982891 (+) |
| LOC110504743 | slbp | coding | downstream | 49410 | 18984434 ~ 18988046 (+) |
| ccdc142 | ccdc142 | coding | downstream | 53267 | 18988291 ~ 18995055 (+) |
| nkx1.2lb | nkx1-1 | coding | downstream | 203019 | 19138043 ~ 19145172 (+) |
| G2258528 | NA | non-coding | upstream | 70880 | 18852365 ~ 18852909 (+) |
| G2258479 | NA | non-coding | upstream | 111729 | 18763539 ~ 18812060 (+) |
| G2258447 | NA | non-coding | upstream | 234137 | 18686593 ~ 18689652 (+) |
| G2258436 | NA | non-coding | upstream | 266063 | 18657434 ~ 18657726 (+) |
| G2258571 | NA | non-coding | downstream | 28149 | 18963173 ~ 18963415 (+) |
| G2258572 | NA | non-coding | downstream | 28780 | 18963804 ~ 18964029 (+) |
| G2258993 | NA | non-coding | downstream | 133569 | 19068593 ~ 19068825 (+) |
| G2259010 | NA | non-coding | downstream | 145353 | 19080377 ~ 19080583 (+) |
| G2259026 | NA | non-coding | downstream | 160713 | 19095737 ~ 19096085 (+) |
| micu3b | LOC106612036 | other | upstream | 912994 | 17971133 ~ 18010807 (+) |
| G2256867 | NA | other | upstream | 1477859 | 17445566 ~ 17445930 (+) |
| G2256788 | NA | other | upstream | 1573444 | 17291119 ~ 17350345 (+) |
| G2256591 | LOC106594957 | other | upstream | 2089945 | 16828805 ~ 16833844 (+) |
| G2256563 | LOC106612100 | other | upstream | 2145764 | 16776894 ~ 16778025 (+) |
| LOC110504399 | LOC106611959 | other | downstream | 1652667 | 20587691 ~ 20876250 (+) |
| G2261028 | NA | other | downstream | 2011709 | 20946733 ~ 20947525 (+) |
| G2261334 | NA | other | downstream | 2507632 | 21442656 ~ 21443007 (+) |
| G2261414 | fchsd1 | other | downstream | 2816791 | 21751815 ~ 21772260 (+) |
| LOC110504779 | LOC106612009 | other | downstream | 3012800 | 21947801 ~ 21953127 (+) |
