Item | Value |
---|---|
gene id | fmr1 |
gene name | LOC106611992 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_050571.1 |
NCBI id | CM025858.1 |
chromosome length | 44108611 |
location | 20561652 ~ 20570457 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
synaptic functional regulator FMR1-like isoform X4 |
id | description |
---|---|
K15516 | FMR; fragile X mental retardation protein |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021583566.2 | False | 4662 | mRNA | 0.44 | 15 | 20561652 | 20570457 |
XM_021583567.2 | False | 4659 | mRNA | 0.44 | 15 | 20561652 | 20570457 |
XM_021583568.2 | False | 4653 | mRNA | 0.44 | 15 | 20561652 | 20570457 |
XM_021583569.2 | True | 4650 | mRNA | 0.44 | 15 | 20561652 | 20570457 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC118946045 | NA | coding | upstream | 4914 | 20553416 ~ 20556738 (+) |
slitrk2 | LOC106611993 | coding | upstream | 309177 | 20248671 ~ 20252475 (+) |
LOC110504296 | NA | coding | upstream | 378941 | 20174522 ~ 20182711 (+) |
LOC110504396 | LOC106611996 | coding | upstream | 1156240 | 19399499 ~ 19405412 (+) |
LOC110504750 | rnf212 | coding | upstream | 1301431 | 19256385 ~ 19260221 (+) |
LOC110504399 | LOC106611959 | coding | downstream | 17283 | 20587691 ~ 20876250 (+) |
LOC110504763 | LOC106611989 | coding | downstream | 388489 | 20958946 ~ 20985376 (+) |
LOC110504765 | LOC106611985 | coding | downstream | 439668 | 21010125 ~ 21015991 (+) |
LOC110504767 | LOC106611984 | coding | downstream | 545671 | 21116128 ~ 21549042 (+) |
LOC110504401 | LOC106611981 | coding | downstream | 988143 | 21558600 ~ 21690698 (+) |
G2260866 | NA | non-coding | upstream | 377 | 20560748 ~ 20561275 (+) |
G2260857 | NA | non-coding | upstream | 4600 | 20556791 ~ 20557052 (+) |
G2260855 | NA | non-coding | upstream | 18054 | 20543378 ~ 20543598 (+) |
G2260848 | NA | non-coding | upstream | 21915 | 20539234 ~ 20539737 (+) |
G2260841 | NA | non-coding | upstream | 29987 | 20531402 ~ 20531665 (+) |
G2260882 | NA | non-coding | downstream | 459 | 20570916 ~ 20571140 (+) |
G2260926 | NA | non-coding | downstream | 63459 | 20633916 ~ 20634424 (+) |
G2260945 | NA | non-coding | downstream | 94472 | 20664929 ~ 20665889 (+) |
G2260946 | NA | non-coding | downstream | 95586 | 20666043 ~ 20669426 (+) |
G2260950 | NA | non-coding | downstream | 108753 | 20679210 ~ 20680271 (+) |
micu3b | LOC106612036 | other | upstream | 2550857 | 17971133 ~ 18010807 (+) |
G2256867 | NA | other | upstream | 3115722 | 17445566 ~ 17445930 (+) |
G2256788 | NA | other | upstream | 3211307 | 17291119 ~ 17350345 (+) |
G2256591 | LOC106594957 | other | upstream | 3727808 | 16828805 ~ 16833844 (+) |
G2256563 | LOC106612100 | other | upstream | 3783627 | 16776894 ~ 16778025 (+) |
G2261028 | NA | other | downstream | 376276 | 20946733 ~ 20947525 (+) |
G2261334 | NA | other | downstream | 872199 | 21442656 ~ 21443007 (+) |
G2261414 | fchsd1 | other | downstream | 1181358 | 21751815 ~ 21772260 (+) |
LOC110504779 | LOC106612009 | other | downstream | 1377367 | 21947801 ~ 21953127 (+) |