LOC110504822 (LOC106611910)


Basic Information

Item Value
gene id LOC110504822
gene name LOC106611910
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25004273 ~ 25011653 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970453.1
cCACATAAGGCGCTAGATTGAAGGTAAGGCCATgcgatagactagagtcctgtctaGCGGGTCCATCAAActgcctcatgctacagaaacTAAAGACCTGCTCCTCGGGCAAGGAGACTTACTAAATGTGTTCTGAATCATGTAAAACAGTCCAATAGCACCACCGACAGTCTTATCACTCCTTTTCATGAACATCAAACTCCAGGTGCCAAGCAGGGCACAAATATGTTccggtattatctgtatattgcTTGTGTTACTGTCTGGTAGCAGTGGGCTGTGGGTGGTGAGGTGATTTGCATTCATATCAGTGTTTATATCAGCCACAGTGTACAATAACTTTCTGTAGAGATGCTCACTCATTCCTCGTCCAGGGAACTCCGTGCATGACCAGAGATCCAGCACAAGAGATGGTACCAATGAAGGCGAGGACAGGGACAGGCTTGTATTCACTTGCTTGCCTTCTCATGATCAGTAGTGTCTGTTCTACCTGTGTTCCCTTGATGTGTCTAAAGTGCAACTTAACCCACTCACCTGGAATATCTGCTGCGGGATTACCAGACAATGCCATCTGTGACATCCTGTGCTCAGACACTACCCAATGCTTCAATGCTACTATTCAACAGTACTGCTCAAAAgATTTTAAAGTGTTACTCAACACCAGTTCTGGGTTCAAAGTGCAGGAGGGTGATAACCTCGACATTGAGTGTTCCCATAACCTGCCGGTGGAACCAAAAAGCCCGCTGGTCTTTGTCTGGCTGATGGATGGCGTCCACCTGAAGGGCAAGAACAGTAGCATGCTCACCGTGAAGAAGGTTGGTATAGATACCTCTGGCAAGGAGAAATATGCCTGCACCATCCAGAGTCCCTGTGGCAACTTCACCTCAGAACCAAAGGAGATTGAAGTTGAAGTGTTTTTATTTCCTACCAATTCCTGGGGATGTCTGTCCCTCTGTGCTGTCTCCATGTGTGTCAGACGTGACGATGTTGGTCATAGTGATCTGTGGTGTGTCTGCTGTGGTGCTGATCCTGGCCATGGGTATAGGCATGAAGATCATGCTGAAGATGGAATTTGcGAAGACAAAGAACAGGAGGCAGCAGAATGCTCAGAACCTACAGAGAACTACAGCAGAGTAGTGTTTCATTTTCTGCAAATTCCACCAAATGTCCTACATGAGAAAATGGCAAAAATTTGACATGATTACACTGTAAATGGATAAATATGTAGCTAACAATTTTATTGTTGTATTTGCAATTTAATCAACATAATTTTATCTCAAAGTCAGTGTTTAACATGGAGAGCCACAGATATGTTGATCCTCTGGCAGTGCCACACAGCAAGTTTGGAGATTTGTCCCAATAAATAATATGCCAAATTCATGATATTTATTAATAAAcatttgtgtatgtttgtgtttatA
>XM_021583649.2
GATTGAAGGTAAGGCCATgcgatagactagagtcctgtctaGCGGGTCCATCAAActgcctcatgctacagaaacTAAAGACCTGCTCCTCGGGCAAGGAGACTTACTAAATGTGTTCTGAATCATGTAAAACAGTCCAATAGCACCACCGACAGTCTTATCACTCCTTTTCATGAACATCAAACTCCAGGTGCCAAGCAGGGCACAAATATGTTccggtattatctgtatattgcTTGTGTTACTGTCTGGTAGCAGTGGGCTGTGGGTGGTGAGGTGATTTGCATTCATATCAGTGTTTATATCAGCCACAGTGTACAATAACTTTCTGTAGAGATGCTCACTCATTCCTCGTCCAGGGAACTCCGTGCATGACCAGAGATCCAGCACAAGAGATGGTACCAATGAAGGCGAGGACAGGGACAGGCTTGTATTCACTTGCTTGCCTTCTCATGATCAGTAGTGTCTGTTCTACCTGTGTTCCCTTGATGTGTCTAAAGTGCAACTTAACCCACTCACCTGGAATATCTGCTGCGGGATTACCAGACAATGCCATCTGTGACATCCTGTGCTCAGACACTACCCAATGCTTCAATGCTACTATTCAACAGTACTGCTCAAAAgATTTTAAAGTGTTACTCAACACCAGTTCTGGGTTCAAAGTGCAGGAGGGTGATAACCTCGACATTGAGTGTTCCCATAACCTGCCGGTGGAACCAAAAAGCCCGCTGGTCTTTGTCTGGCTGATGGATGGCGTCCACCTGAAGGGCAAGAACAGTAGCATGCTCACCGTGAAGAAGGTTGGTATAGATACCTCTGGCAAGGAGAAATATGCCTGCACCATCCAGAGTCCCTGTGGCAACTTCACCTCAGAACCAAAGGAGATTGAAGTTGAAGACGTGACGATGTTGGTCATAGTGATCTGTGGTGTGTCTGCTGTGGTGCTGATCCTGGCCATGGGTATAGGCATGAAGATCATGCTGAAGATGGAATTTGcGAAGACAAAGAACAGGAGGCAGCAGAATGCTCAGAACCTACAGAGAACTACAGCAGAGTAGTGTTTCATTTTCTGCAAATTCCACCAAATGTCCTACATGAGAAAATGGCAAAAATTTGACATGATTACACTGTAAATGGATAAATATGTAGCTAACAATTTTATTGTTGTATTTGCAATTTAATCAACATAATTTTATCTCAAAGTCAGTGTTTAACATGGAGAGCCACAGATATGTTGATCCTCTGGCAGTGCCACACAGCAAGTTTGGAGATTTGTCCCAATAAATAATATGCCAAATTCATGATATTTATTAATAAAcatttgtgtatgtttgtgtttatA

Function

NR:

description
uncharacterized protein LOC110504822

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970453.1 False 1421 mRNA 0.44 8 25004273 25011653
XM_021583649.2 True 1342 mRNA 0.44 8 25004288 25011653

Neighbor

gene id symbol gene type direction distance location
LOC110504821 LOC106611869 coding upstream 147940 24853033 ~ 24856333 (+)
LOC110504805 LOC100691570 coding upstream 1161855 23836618 ~ 23842418 (+)
LOC110504797 LOC106611931 coding upstream 1302485 23694188 ~ 23701788 (+)
LOC110504798 NA coding upstream 1323639 23675075 ~ 23680634 (+)
htr4 LOC106611927 coding upstream 1865368 23048270 ~ 23138905 (+)
LOC110504823 LOC106604841 coding downstream 53835 25065488 ~ 25080226 (+)
LOC110504826 LOC106611870 coding downstream 79979 25091632 ~ 25181408 (+)
LOC100136157 LOC100136157 coding downstream 171569 25183222 ~ 25191478 (+)
hmgxb3 hmgxb3 coding downstream 190426 25202079 ~ 25215380 (+)
LOC110504297 LOC106611877 coding downstream 292625 25304278 ~ 25308642 (+)
G2265295 NA non-coding upstream 10436 24990460 ~ 24993837 (+)
G2265263 NA non-coding upstream 31903 24972150 ~ 24972370 (+)
G2265260 NA non-coding upstream 36008 24968032 ~ 24968265 (+)
G2265253 NA non-coding upstream 52685 24951312 ~ 24951588 (+)
G2265225 NA non-coding upstream 68780 24914753 ~ 24935493 (+)
G2265325 NA non-coding downstream 25659 25037312 ~ 25042842 (+)
G2265340 NA non-coding downstream 50212 25061865 ~ 25062077 (+)
G2265342 NA non-coding downstream 52818 25064471 ~ 25065397 (+)
G2265348 NA non-coding downstream 61061 25072714 ~ 25076086 (+)
G2265349 NA non-coding downstream 63842 25075495 ~ 25076500 (+)
G2264345 NA other upstream 813238 24190750 ~ 24191035 (+)
G2264344 NA other upstream 813921 24190073 ~ 24190352 (+)
G2264210 LOC106582338 other upstream 1123241 23880781 ~ 23881032 (+)
G2264113 LOC100136700 other upstream 1140300 23855609 ~ 23863973 (+)
G2264115 NA other upstream 1293187 23697688 ~ 23711086 (+)
G2265425 LOC106611874 other downstream 203998 25215651 ~ 25244329 (+)
si:dkey-74k8.4 aldob other downstream 570340 25557578 ~ 25586728 (+)
G2265625 NA other downstream 613492 25625145 ~ 25626856 (+)
LOC110504852 LOC106611898 other downstream 812387 25820435 ~ 25838497 (+)
G2265744 NA other downstream 966482 25978135 ~ 25978638 (+)

Expression


Co-expression Network