LOC110504823 (LOC106604841)


Basic Information

Item Value
gene id LOC110504823
gene name LOC106604841
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25065488 ~ 25080226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970021.1
CCTCTGCTAAAATAACCCAGTGAGGTAAGCACAGAGGGATCACTGGTATACAAACTGTTGCCTCGCAGATCAGAAGCATCAGAGTGGGATAGGGAAGCATCCCGGATTCAGGAGGATAAACCACACAGCGATATACTAATCTCATATCACTTCACCTTTACTGCTGAATCTGTGAGAGGAGACAGGCGAGACAGAGGAAGATAATGCAATCACCTTATGATGACCTGGCCAAGCAGAGGATCCAGCAGTCCAGGGCTTTGTGTTCAGAGGCCAGGCGAGAAGGTCTGAACTTGGGGAAGAAGATCAGCATACCCAAGGATGTGATGATGGAAGAGTTGAACCTTCAGTCCAACCGTGGCTCCCGCATGTTCCAGGAGAGACTGAAGAGGGTGGAGAGGTTCACTCTGGAGAACCAAGTCAACGACTTATACAGCAatGGCCTTCCAGAGCCCATGCCTTCCCAGACAGTAGAAGAGCCCCAGGGGGGGAAGGAGAACCAGGCATATATGATGCCTGGCAAACACAGCCTGATCACCACCCTACAGAAAACTGTGGCCAAGAAGGGCAGCCCCAATGTCATCGCCCCAGGCTACGGGAGCCCCCTGAAGGAGATCCCCCGTGAGAAGTTCAACCTGACAACCAGGTCCTACTGTTCCCCCTGGAGGGAAGCCCTGGGTGACAGTGACAGGCTCCTGTTGACTCTCAGCACCCAGCTCCCACGGGGGGCCACACTACAGCCGGCCAACTACAGGTGCTTCAACAGagCGGCCACACCTTTTGGAGGCCCACAGCAGCAGAGTAAGAGGGTGATCCCAGTGATGGGGTTCGAGCTGTTGGACTCACAGCACCTCCCTGGTACGACCCTGGACCGCATGTGTAAACGGCCCAACTTCAACAGAGCACCACGGGGATGGGGTCACGACTACTCCCCTGAATCCACCGACCTGTGATTGGCCCACTGCTCACCTACGTCCTTCAAACTTCTGGTGACATCACAGGCTAAAAGACTGAAGCATTAATCTGCTCTTATTACCCATCCTCATCCCTCTGGATTCAAAGATGACCTATCCGGATGAGGAAGAAGTTGCCTCAAAATACAGATATTTTCATCTGTTTAATAGTTAGGATAAGagtagatctgtggttaggggcaACTTGTAACTCGAGTGATCCCTGTTATTGAGTGACTCCTCCTTTCTTTCATCTTAATGCCCTCTTACCCATCCTCACTCCCCCATTCACCTCACCACTTGCCTCCCTTCCCATCCCCTGTTcactcatccctccctctttcagaCCCCCCCTGTTTATAAAGGACTGACAGTGTGATCTTGATTAATGTAAATGATAGAGTACTTGTTTTAATGGCATAAGCGGACAAGATACGTGAAACATTACAATAATAAAATTGTATCAAAGTGAGAAA
>XM_036970022.1
ATAACCCAGTGAGGTAAGCACAGAGGGATCACTGGTATACAAACTGTTGCCTCGCAGATCAGAAGCATCAGAGTGGGATAGGGAAGCATCCCGGATTCAGGAGGATAAACCACACAGCGATATACTAATCTCATATCACTTCACCTTTACTGCTGAATCTGTGAGAGGAGACAGGCGAGACAGCCATCCACATCACCACCTGTCCCCCACCAGAGGAAGATAATGCAATCACCTTATGATGACCTGGCCAAGCAGAGGATCCAGCAGTCCAGGGCTTTGTGTTCAGAGGCCAGGCGAGAAGGTCTGAACTTGGGGAAGAAGATCAGCATACCCAAGGATGTGATGATGGAAGAGTTGAACCTTCAGTCCAACCGTGGCTCCCGCATGTTCCAGGAGAGACTGAAGAGGGTGGAGAGGTTCACTCTGGAGAACCAAGTCAACGACTTATACAGCAatGGCCTTCCAGAGCCCATGCCTTCCCAGACAGTAGAAGAGCCCCAGGGGGGGAAGGAGAACCAGGCATATATGATGCCTGGCAAACACAGCCTGATCACCACCCTACAGAAAACTGTGGCCAAGAAGGGCAGCCCCAATGTCATCGCCCCAGGCTACGGGAGCCCCCTGAAGGAGATCCCCCGTGAGAAGTTCAACCTGACAACCAGGTCCTACTGTTCCCCCTGGAGGGAAGCCCTGGGTGACAGTGACAGGCTCCTGTTGACTCTCAGCACCCAGCTCCCACGGGGGGCCACACTACAGCCGGCCAACTACAGGTGCTTCAACAGagCGGCCACACCTTTTGGAGGCCCACAGCAGCAGAGTAAGAGGGTGATCCCAGTGATGGGGTTCGAGCTGTTGGACTCACAGCACCTCCCTGGTACGACCCTGGACCGCATGTGTAAACGGCCCAACTTCAACAGAGCACCACGGGGATGGGGTCACGACTACTCCCCTGAATCCACCGACCTGTGATTGGCCCACTGCTCACCTACGTCCTTCAAACTTCTGGTGACATCACAGGCTAAAAGACTGAAGCATTAATCTGCTCTTATTACCCATCCTCATCCCTCTGGATTCAAAGATGACCTATCCGGATGAGGAAGAAGTTGCCTCAAAATACAGATATTTTCATCTGTTTAATAGTTAGGATAAGagtagatctgtggttaggggcaACTTGTAACTCGAGTGATCCCTGTTATTGAGTGACTCCTCCTTTCTTTCATCTTAATGCCCTCTTACCCATCCTCACTCCCCCATTCACCTCACCACTTGCCTCCCTTCCCATCCCCTGTTcactcatccctccctctttcagaCCCCCCCTGTTTATAAAGGACTGACAGTGTGATCTTGATTAATGTAAATGATAGAGTACTTGTTTTAATGGCATAAGCGGACAAGATACGTGAAACATTACAATAATAAAATTGTATCAAAGTGAGAAA
>XM_036970023.1
ATAACCCAGTGAGGTAAGCACAGAGGGATCACTGGTATACAAACTGTTGCCTCGCAGATCAGAAGCATCAGAGTGGGATAGGGAAGCATCCCGGATTCAGGAGGATAAACCACACAGCGATATACTAATCTCATATCACTTCACCTTTACTGCTGAATCTGTGAGAGGAGACAGGCGAGACAGAGGAAGATAATGCAATCACCTTATGATGACCTGGCCAAGCAGAGGATCCAGCAGTCCAGGGCTTTGTGTTCAGAGGCCAGGCGAGGTCTGAACTTGGGGAAGAAGATCAGCATACCCAAGGATGTGATGATGGAAGAGTTGAACCTTCAGTCCAACCGTGGCTCCCGCATGTTCCAGGAGAGACTGAAGAGGGTGGAGAGGTTCACTCTGGAGAACCAAGTCAACGACTTATACAGCAatGGCCTTCCAGAGCCCATGCCTTCCCAGACAGTAGAAGAGCCCCAGGGGGGGAAGGAGAACCAGGCATATATGATGCCTGGCAAACACAGCCTGATCACCACCCTACAGAAAACTGTGGCCAAGAAGGGCAGCCCCAATGTCATCGCCCCAGGCTACGGGAGCCCCCTGAAGGAGATCCCCCGTGAGAAGTTCAACCTGACAACCAGGTCCTACTGTTCCCCCTGGAGGGAAGCCCTGGGTGACAGTGACAGGCTCCTGTTGACTCTCAGCACCCAGCTCCCACGGGGGGCCACACTACAGCCGGCCAACTACAGGTGCTTCAACAGagCGGCCACACCTTTTGGAGGCCCACAGCAGCAGAGTAAGAGGGTGATCCCAGTGATGGGGTTCGAGCTGTTGGACTCACAGCACCTCCCTGGTACGACCCTGGACCGCATGTGTAAACGGCCCAACTTCAACAGAGCACCACGGGGATGGGGTCACGACTACTCCCCTGAATCCACCGACCTGTGATTGGCCCACTGCTCACCTACGTCCTTCAAACTTCTGGTGACATCACAGGCTAAAAGACTGAAGCATTAATCTGCTCTTATTACCCATCCTCATCCCTCTGGATTCAAAGATGACCTATCCGGATGAGGAAGAAGTTGCCTCAAAATACAGATATTTTCATCTGTTTAATAGTTAGGATAAGagtagatctgtggttaggggcaACTTGTAACTCGAGTGATCCCTGTTATTGAGTGACTCCTCCTTTCTTTCATCTTAATGCCCTCTTACCCATCCTCACTCCCCCATTCACCTCACCACTTGCCTCCCTTCCCATCCCCTGTTcactcatccctccctctttcagaCCCCCCCTGTTTATAAAGGACTGACAGTGTGATCTTGATTAATGTAAATGATAGAGTACTTGTTTTAATGGCATAAGCGGACAAGATACGTGAAACATTACAATAATAAAATTGTATCAAAGTGAGAAA
>XM_036970024.1
ATAACCCAGTGAGGTAAGCACAGAGGGATCACTGGTATACAAACTGTTGCCTCGCAGATCAGAAGCATCAGAGTGGGATAGGGAAGCATCCCGGATTCAGGAGGATAAACCACACAGCGATATACTAATCTCATATCACTTCACCTTTACTGCTGAATCTGTGAGAGGAGACAGGCGAGACAGCCATCCACATCACCACCTGTCCCCCACCAGAGGAAGATAATGCAATCACCTTATGATGACCTGGCCAAGCAGAGGATCCAGCAGTCCAGGGCTTTGTGTTCAGAGGCCAGGCGAGGTCTGAACTTGGGGAAGAAGATCAGCATACCCAAGGATGTGATGATGGAAGAGTTGAACCTTCAGTCCAACCGTGGCTCCCGCATGTTCCAGGAGAGACTGAAGAGGGTGGAGAGGTTCACTCTGGAGAACCAAGTCAACGACTTATACAGCAatGGCCTTCCAGAGCCCATGCCTTCCCAGACAGTAGAAGAGCCCCAGGGGGGGAAGGAGAACCAGGCATATATGATGCCTGGCAAACACAGCCTGATCACCACCCTACAGAAAACTGTGGCCAAGAAGGGCAGCCCCAATGTCATCGCCCCAGGCTACGGGAGCCCCCTGAAGGAGATCCCCCGTGAGAAGTTCAACCTGACAACCAGGTCCTACTGTTCCCCCTGGAGGGAAGCCCTGGGTGACAGTGACAGGCTCCTGTTGACTCTCAGCACCCAGCTCCCACGGGGGGCCACACTACAGCCGGCCAACTACAGGTGCTTCAACAGagCGGCCACACCTTTTGGAGGCCCACAGCAGCAGAGTAAGAGGGTGATCCCAGTGATGGGGTTCGAGCTGTTGGACTCACAGCACCTCCCTGGTACGACCCTGGACCGCATGTGTAAACGGCCCAACTTCAACAGAGCACCACGGGGATGGGGTCACGACTACTCCCCTGAATCCACCGACCTGTGATTGGCCCACTGCTCACCTACGTCCTTCAAACTTCTGGTGACATCACAGGCTAAAAGACTGAAGCATTAATCTGCTCTTATTACCCATCCTCATCCCTCTGGATTCAAAGATGACCTATCCGGATGAGGAAGAAGTTGCCTCAAAATACAGATATTTTCATCTGTTTAATAGTTAGGATAAGagtagatctgtggttaggggcaACTTGTAACTCGAGTGATCCCTGTTATTGAGTGACTCCTCCTTTCTTTCATCTTAATGCCCTCTTACCCATCCTCACTCCCCCATTCACCTCACCACTTGCCTCCCTTCCCATCCCCTGTTcactcatccctccctctttcagaCCCCCCCTGTTTATAAAGGACTGACAGTGTGATCTTGATTAATGTAAATGATAGAGTACTTGTTTTAATGGCATAAGCGGACAAGATACGTGAAACATTACAATAATAAAATTGTATCAAAGTGAGAAA

Function

NR:

description
myozenin-2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970021.1 False 1426 mRNA 0.51 6 25065488 25080226
XM_036970022.1 False 1445 mRNA 0.51 6 25065499 25080226
XM_036970023.1 False 1412 mRNA 0.51 6 25065499 25080226
XM_036970024.1 True 1442 mRNA 0.51 6 25065499 25080226

Neighbor

gene id symbol gene type direction distance location
LOC110504822 LOC106611910 coding upstream 53835 25004273 ~ 25011653 (+)
LOC110504821 LOC106611869 coding upstream 209155 24853033 ~ 24856333 (+)
LOC110504805 LOC100691570 coding upstream 1223070 23836618 ~ 23842418 (+)
LOC110504797 LOC106611931 coding upstream 1363700 23694188 ~ 23701788 (+)
LOC110504798 NA coding upstream 1384854 23675075 ~ 23680634 (+)
LOC110504826 LOC106611870 coding downstream 11406 25091632 ~ 25181408 (+)
LOC100136157 LOC100136157 coding downstream 102996 25183222 ~ 25191478 (+)
hmgxb3 hmgxb3 coding downstream 121853 25202079 ~ 25215380 (+)
LOC110504297 LOC106611877 coding downstream 224052 25304278 ~ 25308642 (+)
LOC110504832 LOC106611862 coding downstream 437707 25517933 ~ 25536990 (+)
G2265342 NA non-coding upstream 91 25064471 ~ 25065397 (+)
G2265340 NA non-coding upstream 3411 25061865 ~ 25062077 (+)
G2265325 NA non-coding upstream 22646 25037312 ~ 25042842 (+)
G2265295 NA non-coding upstream 71651 24990460 ~ 24993837 (+)
G2265263 NA non-coding upstream 93118 24972150 ~ 24972370 (+)
G2265371 NA non-coding downstream 27556 25107782 ~ 25108470 (+)
G2265431 NA non-coding downstream 114608 25194834 ~ 25195072 (+)
G2265433 NA non-coding downstream 115541 25195767 ~ 25196074 (+)
G2265432 NA non-coding downstream 116010 25196236 ~ 25196531 (+)
G2264345 NA other upstream 874453 24190750 ~ 24191035 (+)
G2264344 NA other upstream 875136 24190073 ~ 24190352 (+)
G2264210 LOC106582338 other upstream 1184456 23880781 ~ 23881032 (+)
G2264113 LOC100136700 other upstream 1201515 23855609 ~ 23863973 (+)
G2264115 NA other upstream 1354402 23697688 ~ 23711086 (+)
G2265425 LOC106611874 other downstream 135425 25215651 ~ 25244329 (+)
si:dkey-74k8.4 aldob other downstream 501767 25557578 ~ 25586728 (+)
G2265625 NA other downstream 544919 25625145 ~ 25626856 (+)
LOC110504852 LOC106611898 other downstream 743814 25820435 ~ 25838497 (+)
G2265744 NA other downstream 897909 25978135 ~ 25978638 (+)

Expression


Co-expression Network