hmgxb3 (hmgxb3)


Basic Information

Item Value
gene id hmgxb3
gene name hmgxb3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25202079 ~ 25215380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970479.1
ACACAGCGCCATGTTTGCTGCAAGACTAGGACAAATCGAGTGCTTTGAGGCCCTTAGATTAAAAACGAAGTAGCCCAGTTTAAGGCAAAATATAGAGAAATATACTTATTCTAGGCAATGTGAGCGATGCAGTTCAGTTTCAGCGTCGCTTGAAGCCATCTCAGATCTAGTTTGAGAGTTCTTCAGGGCAACAGAGGCTCTCCTCGGTTCCCTTTAGCCATGGAGACCATAGAGGTGTATGAGGAGACTGATCGGAGGATGACGGAGGAGGTGGAGAGCTGCTACACCCTGATGGAGGTCACCTCTcccaagaagaggaagaagaacaaGGCTCAGCAGGGGGAGATCATGGAGAAACCCAAGAAACCCAGATCAGCCTACCTGCTGTACTACTTTGATGTGCATCAGACCATGCAGCAGGAGTTCCCCAGcctgccccagtctgagatcaaCAAGAGGATCAGTGTGAGCTGGAAGAGGCTCAATGTGGCAGACAAGGGCTACTACCTGGAGAAGGCCAAGCTGGAGAAGGAAGGGACGGACACGTCATCTATGGGCCCTTCCCAGGAGCTCCCAGGCTTCCGTAGGATCCTCCCCAGGGCAAACTACGTCCTCCTGCCCAAGGGGGCCATGTCAGACGACAGGACAGGCTCCCAGCTGGAGGTGTGTATGGAGGGGCTGGACTCTCCCGTGGGGGAAGGGGTGATGCCCTCCCTGTCCCTTGGTTCCCCCCAGTACCCTCCCTTGGTGCTGGGCTGCGAGGTGGAGCTGTCGCAGCAGTGCATCGCCATCGAGGGCCTGACAGACGAAAAGGCTGTGACCCTGACACACTCCGGGGCCCTGCAGGGGGTCCTCTCCTCATCGTATCACTCCTCTTCCTCAGTCTCTGCCGCCCACGAATCCCACAATGCACCTCACCTGGCGTCAGCCGGTCTGCTGCTCAAGGAGGAGGAGCCCAGGGTGGTGGGCGGGGGCTATAGTGTCATTGGAATGGCGACTGACGGGAGGCGTGTGGGCGGGACGTCGGTGCAGCACGTGAAAACAGAGCTGGTCACCATCATACCCAATCAGGATCTGATGGAGCACAGGACGTTGCCAGGAGCCAGCTCTGTAGCCTCTGTTGTCATGGTACCTGTAGGAGCTAGGGTGATACAGGACACTAATCCCTCATACAAACTGTCGAATAAATACACCAGAAGAGGCCGGGGCAGCTGTCAGACAGCGGGCTGCTCCTTTGTCTACGTGACCCGTCACAAACCACCCTTCTGTCCTGATTGTGGCAACCACCTGGGGGGCAAGTGGGTGCCCGCTGCGGTAAAGACTCCAGGTGCTGCTGCTTCATTCAAGACTTATGCCCAGAAACCACCCAAAAACCCTGGGTACCCCCCTAAGACTGGTGTGCCTCCCTCTGATGATCAGAACAGTAAGGTGtctggatggaggaagggagggagaggaccgCGGGAGCCCAGAGGACAAGGGCAGCAGCGTGCAGTTACACCAGGACCACCactagagggaggtagagacaacagccAGGGAGTCATACAGCCTGCTCCAGCGATGTCAGGGACACAGACAACTACTATGATAGCTTTGGTTGGAACACCTGTGACTGGTGCCAGGGTCAAAGTACAGGAAAGGAGCAGTGTGGTTGGTCAAAAGCGACCTGTGAGAGCCATCCTCCCAGCCCCATTCAACACAGGCCGGGCCTTAGTCCAGTGGATTACTGTCCCTCCTCATAAAGGCAAAGTTGAGGAGACCAACTGCAGCAAATCAACCACAGAGCTCAGTGAGATGATCGCAGGTTTGAAGCCTAACACTCTGAAACAGCTCGGCCAGATCGTGACAACAACACCTCTGGAACAGACTCTCCCTACTCCTGTGGACAGAAGCCAGTATATTGTAACTGATAAAGTAGGGAAGATCCTATCAGTGGTTCCTCTCAAACAGAACTCTACCTCCACACTGgacctGGGTCTGTCTACGGCGCGGGGCAGGGGTCGCTGTAAGAACCCGTCATGTGGCTATGTTTATAAGAACAGACACAAGCCTGCGGAGTGCCCCTGCTGTGGCTTGGAGCTGTCCAGGAAGAACGCCAAGGGCTCCAAGGCACAGggTGGTTCAGTAGCTCTGTTAGACCCGTACCGGACCCTGTCCCCAGCCCAGAGGGAGCTTCAGCGCCAGTCCACCCTGCAGCTGCTGCGCCAGGCCCTGCAGATCTCTGAGAGTGAGGCTGAGCTCCATGACACCCTGGCCCTCATCCAGGAACTCAACTCTACCCAGGTGGTCCTCACCACGACCACCACCCAGGCCGGGGACCAGGTGTTAGGGGAAGGCGGGGGCCTGGGGGAGGTGCAGGTCCAGTCAGGCTGGCCGCGGTTCTATGAGTCTGCAGCCACACACTGTGCTCTGTGTCACTACCCGCTATTCAAGGGAGGACAGAGTTCTTTAGCAGGGCAGGAGGACTGCTGGCTGTTGActgactctctgatccagacaGCCTCTCTCCAGCTGAAGGTGTGTCTCAACCCCCAGTGTCTGGCCCTGCACAGCTTCACCGACCTCCACCCAGGTCTGTTCAATGTTGGCAACAGGTTGCTGGTGAGTCTGGACCTGTTCTTTAAGATCCGGAGTCAGATCAGACTGGGCCGGCATCCTAACCAGATAGTCAGGACCATCCTGGACCACATCCACAACCACGCTGTCCACACTCTGAGTCCTGAGGAGTTGGCCCATGTCCAGGAGCTGCTGGTTAGTGGCTACTGGGCCTTTGAGTGTCTGACCGTAAGGGACTACAACGACATGATCTGTGGTGTGTGTGGCATCGCCCCCAAGATGGAGATCGCCCAGCGGTACACACACAACGTGCTGGAGCTTAGGAATGTGGAgTTTACGTGGCCAGACTTCGGGGCTCCAGACAAGGTGCATGTGGATGACTTCTGGCTGACCATGGAGAGTGAGGCCATCGAGCAGGCAGCGTTCCCCTGCAGCGTCCCCATCACCCGGGTCGACGCCTCCATCATCGCCCCCTTCATCCCACCACTAATGAGGAGCTCCACTGTCATCAACACAGAGAAGGACAAGGCCCTGCTCCTCACACAGCACACAGgtGACCCATCTGTTCTGGTGCGTCTGATCCACGAGGGCCAACTCAGACCGGACCGAATGGATGAGCACAGTGCAGAGGAGCTCAAAGCCATACTGGAATGCTGTGGCGAGATCACTGCACCAGAGAGCAACAAGgatgaGTTGCTGGTCTCTCTGATCTCCCTGTGTACGTGTGTTCAGAACGGCCTCTCCACGGCCCCCCAGCCCCCTCCACACCTCACAGCAGGCAAGCTGTCCAAGATCTGCCCCCATCAGGTGGTGTGTGGTTCCAAGTACCTGGTGAAGGGTGAGACGGCACGCGACCACGTGGACCTGCTGGTGTCCTCCCGGTATTGGCCTCCCGTCTACGTTACCGACTCTGCCCGCCAGGTGGCGCTGTGTACAGACGTGCAGTACCCTGAGCTGGCCTCCACCATGTGGGGCAGGAACCAGGGCTGCTTCTCTGATCCCATGGACAAACCAGAGtttGTGTCGTGTGCTGAGCTACAGGACCAGCCTTACTGTGCTGACCTGTCCTCCGTGGTGGAGAACCCCCAGGTCCACCCTGTCACCAAGTCCTCTTCCCGCTGGATAGTGCATCCTGCTGGGCCTACAGATGGCCAGGAGCCCCCCTGTCTGGACCACCACTCAATGGGGCTCTGCAATGAGCTGGAACCTTACTGCAGTCTGGTACaagacctggagagagacaacgagaAAGAAGAGGACgaagggaaggaggagaagaaggatggGTTCAAGGTTGAAGCCGAGGTGACAGAAGGGTCAGAGGTCACTGAGGAGGAATGTTCTGAGGGTTTGGTGACATCATTGCGGCGGAGACCTTTGGCCTTTGACAACACGGCCTACTACTACCTGTACAACCGTCTGCAGGACTTCCTGTCCAGCCGGGAGGTGGTGGACCAGCAGATCAGCACAGTGCTGAAGGCCTGCCAGCCTGGGGAGGTGGTGATCAGGGATGCCCTCTACAGGCTGGGGGTGGCACAGATCAAcacagaggaaggggaggagggggaaggagacgggggggtggagggagacacTGGGTATGAGGAGGTAGTGGTTCTCTGAGAGTGACAGACTGTGGCTTTTTGGAGACTTATTTTGTGCTGTGACCCAACAAGTAAACAAACCAATATAACTTTCTGACGTTGGGGGATAATGTTTAATATTATGGACATGTGGCCCATATTATTATGAGGTAGTCCTTTTTTTAGAAAGAAGGctatttatatacatatataatatatatggaGATATCTGGTTCAGAAAAGCTAGCGTGTAGTGGGGAGGCTGGTAGTCCTTGAATGTACTGTGCAAAAATATGCTTTGAGTGTTTCCAAAGAAACAGAGGTGTTGCTGCTAACCAGACAGATAGTCTGTAACTTATCAGTCCAGCAGAGACTTTGTTGCTGGTTTGAAATGAAAGAATGGCACTTTGTTTTCTTTGTGAGAGGAGCAGAACCAGTGAAGAGTGTAAAAACGTGACTGTTACTAACTGCTCTCTGCTTTACTTTGACTGAAGGAAAGTTCACACAGTTTTAGAATAGATAACAACGTTTAAAAACATTGTTTATGTTGACTAACTTCATTGTTGGAGTGCATCATGTTCTTTCTAGaagtataataataattatgattaTTTAATAACTGTATTTAATGAGTCCTCGTGCTTTCTCATCCTCAGTAAGACCTTTCACACTGTTCTATGCTATCTTCTGGTACCTCACTCGTTGCCCTTTGGGCTGAAATGTATTCAAGGTAAACAACCTTTCACATCTGCCTCATGGGCTGATGGAATCTGTAGTTCTTGTGGCCTTTGATTGGGTTTTTGACCACGGGAGACTCTTGCCTGAGCTCCTATTGGAGGGGTGGCTCTGAATGTCAGGACTGTTCTATCATCTACTCTCAGCTGCTTGAATGGAATCTAAAGAAGACAATGATTGACTTGATGATGTAACTGTGATGGACATAGTTATTACAGTTTGCGGATGGAACTTGATACCCACTCAAGGGGTATGAAAATATATGGTGACGGTAGACATTTCTGAATAATTTTGCTTAAGGAATTATAAATAAAGCAAATAAAGTATTTCCTAATGTTGAATCAA

Function

symbol description
hmgxb3 Predicted to enable DNA binding activity. Predicted to be located in nucleus. Orthologous to human HMGXB3 (HMG-box containing 3).

NR:

description
HMG domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970479.1 True 5222 mRNA 0.53 20 25202079 25215380

Neighbor

gene id symbol gene type direction distance location
LOC100136157 LOC100136157 coding upstream 10601 25183222 ~ 25191478 (+)
LOC110504826 LOC106611870 coding upstream 20671 25091632 ~ 25181408 (+)
LOC110504823 LOC106604841 coding upstream 121853 25065488 ~ 25080226 (+)
LOC110504822 LOC106611910 coding upstream 190426 25004273 ~ 25011653 (+)
LOC110504821 LOC106611869 coding upstream 345746 24853033 ~ 24856333 (+)
LOC110504297 LOC106611877 coding downstream 88898 25304278 ~ 25308642 (+)
LOC110504832 LOC106611862 coding downstream 302553 25517933 ~ 25536990 (+)
LOC118946013 NA coding downstream 325596 25540976 ~ 25551549 (+)
LOC110504839 LOC106611885 coding downstream 336197 25551577 ~ 25576248 (+)
si:dkey-74k8.4 aldob coding downstream 363829 25557578 ~ 25586728 (+)
G2265424 NA non-coding upstream 2465 25199326 ~ 25199614 (+)
G2265432 NA non-coding upstream 5548 25196236 ~ 25196531 (+)
G2265433 NA non-coding upstream 6005 25195767 ~ 25196074 (+)
G2265431 NA non-coding upstream 7007 25194834 ~ 25195072 (+)
G2265476 NA non-coding downstream 76917 25292297 ~ 25292506 (+)
G2265480 NA non-coding downstream 83422 25298802 ~ 25299091 (+)
G2265490 NA non-coding downstream 94050 25309430 ~ 25309668 (+)
G2265491 NA non-coding downstream 95073 25310453 ~ 25310733 (+)
G2265453 LOC106611878 non-coding downstream 95748 25311128 ~ 25314079 (+)
G2264345 NA other upstream 1011044 24190750 ~ 24191035 (+)
G2264344 NA other upstream 1011727 24190073 ~ 24190352 (+)
G2264210 LOC106582338 other upstream 1321047 23880781 ~ 23881032 (+)
G2264113 LOC100136700 other upstream 1338106 23855609 ~ 23863973 (+)
G2264115 NA other upstream 1490993 23697688 ~ 23711086 (+)
G2265425 LOC106611874 other downstream 271 25215651 ~ 25244329 (+)
G2265625 NA other downstream 409765 25625145 ~ 25626856 (+)
LOC110504852 LOC106611898 other downstream 608660 25820435 ~ 25838497 (+)
G2265744 NA other downstream 762755 25978135 ~ 25978638 (+)

Expression


Co-expression Network