LOC110504832 (LOC106611862)


Basic Information

Item Value
gene id LOC110504832
gene name LOC106611862
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25517933 ~ 25536990 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970123.1
GGCCAAAGTTGAAAGTTTACCATGCCCGATGTGAAGAACGAAAGCATGCACACCGATGTGGCCAAGTTTATTAAATTAGTTAAAATGTAACGTTATCTTGTTGTGTTTGTGTTAACGTTTGAATATGTCTTTAAGGAAGGTGCATGCTTCAAATCAAAAATTGAACCATTTGATCTACCAGTATTTAAAAGAGAATGGCTTCCAGAAAGCTGCAGAAGAACTCAAGAAGCATGTGAAGAAGGGTGGAGAACCAGAAGCCTTGTCAACATCACTACTGGAGATCTACAATAAATGGTTCGGAGATACTTCCAAGACCACAGAAAAGGGAACAGAACCGGATTCTTCCAAGTTAAAAAAGAACTGTCAAGCAGACCCTGAAAGCAGCACAGAGAGCTCAAGTTCAGCAGAGGAAGAAACAAAACCTGTTAAAGGCTCCCAGACCCCAAAGCATCAGAGCCCAGCTACTGCCAGACCAGCTAAGGGCAGGGCTGCAGTGCAGAGCACCTCTGGAGGAAAGGCCACAGTGGGGGAGAGCTCTGGGTCTGACAGCTCAGAGGTCTCTGAAGACTCAGAGAGTGAGGAGACACCACCACAGAAAATCCCTGTGACACCCAAAGCCAATCATGTTCCAGCTGCAAAGGTCAAGGCCAGGTCAGCGGTCACACCATTGACCCTGAACAAGAAACCAGCAGAGAGCTCAGACAGTGACAGCAGCTCAGGGAGTGAAGATGAAAGCCAGAGTCTGCTTCCACAGACAACAGCTGCCACAACTACAGCTACACCAGTGAAGCAACCAAAACCAAGTTCAACAGCCAAGACAAAAGCCACTCCTGCTACCCCAGCTAAACCAGTGGTTGCTGCTACGCCAAGCAAGGCACCATCTACTGCCCCAGCCACACCAAAAGGAAAGAAGGTGACCACAAAAGACAAGAAAGCAACAGCAACAAAGAAAGCACAGGCCTCAGCTTCATCAGCCAAGAGGAAGAGATGTGAAGAGAAACCAGGGGACATGCCCGCTAATAACAAGAGGAAGAAGCCCTCCCCTCCACAGGCGGCGACTGTCATGGTCGCCATGCCTCAGAcccctcctgttcctcctcctacTGGGGGTGACGAGTCTGACTCAGACTCTGACACCGAACTGGATGTGGAGAAGTGGAAGAAACTGGCACGGGAACTgtcagACGCTGATATTGCCAAAATAGACACCATCACTGCACTGAATGCTCCACCTGCTCCCACCTCACCTGCCTCAGCAGCGAAGAAAACAAGAGCACCGAGGAAGCCCAGGGCTAAATCTGCACTGGAAACACCCCCCAATCCCAGGGCCAAATCTGCAACGAAAACACCAAAACCCAAGGCTGACGCTGCAGTGAAAAAGGCTGGTCATGCTAAAAAGTTCAAAGCTACAACTGAAAAAAAAGCCATGGCTGAGGAGAATGGGAAGACCAAGACACCAGCAAAAGACAGTAAAGCCAAGTCTAGTCAAGTGAAGAAGGCAgcacctccctccccatcccctgaAGGCCAAGCAGAGGAGATCAACAGTAATACAGCTGACCTAATAGTTGTAGCAGACAAACAGCCACCCTCCATGCTCTCTACCACAACACTTAATGGAAAACAGACAGCCAAGAAAGGAAAGAGGAAAAATGGGAACATTAGTAAGGCTAAAGCAGATAAGAATCTACCAGAacccaagaagaagaaaaagaaaaaggaGATTGTAGAGGAGAAGACGGaaccagagaagaagaaaaaggagAAGACGACTAAGGAGAATGGGGCagaaaaagagaaggaaagaaagaagaaaCAGGAGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACAGGAGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACGGGAGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACGGGAGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACAGGAGAAGATGTGCAGGGACAATGAGACTGAGAAGAAACAGGAGAAGATGTGCAGGGACAATGAGACTGAGAAGAAACAAGAGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACAAGAGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACGGGAGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACGGGAGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACAGGTGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACGGGGAAAAGACAAGAACAAGACCAAAGGGAATGGCGTTAAAAGTGACCCACTACCTCCATCCACCACAGGAACGCCTGATCCTCcaacagagaagaagaaaaAGAAGAACAAGCTGAAACTCTCAGTGGAGATTGCAGTGCCTGAGACTCCGGTCACCCCTGTACAGGCATCCACAAAGACCCCTCCTAGAAAGGTAAGGAAGCTATCATCCTCATCTTTACCAAGGTGTAGAAGTAGTAGCAAGACAGACACACATGCTCTTTCTTGATGTTGAATTCCAGCATGTTTATACTGCTCACTGCATGCCTTAGTCCTCAGACCTATAACTGTTGCAATATACAGAGAGccttaaatgtttttgtttttgttctcCTCAGAAAAATAAATCATCTAAGAGTAAGTCAGGCCTTTAGAGATGAAGGTCACCTACAATGGGGCTGTGTCAAGTGTGGACCTGGACCCAGGATTCTACCTAAATGGTAGTAATGGTAAAGACTGTCTGTCCACACAATGGTCTCCCTAGACCAAATCAACTGGGCCAAGCTTTTCAAAAGTTATCTGGATTTCGCCTATCGGAGAGGTTGaaatgcatagaaatagaatgaatagaacagaagtccccattcaagtcaatgatttgTCTgtcctattcattctatttctatgcatttaattGTATCCGATAGGCGAAATCCAGATAGATAACGTTAGAAAAACCGGGCCTTGGGGATTTGTTTGATTTTTTTTACAacattgtatactgtattaaATGAACACTTTTCCTGTTGGTACATTTTATTGaagttaaaacattcatttttaTTAGTTTATCCCCTCCAAAATAATTGTACAGTTTGCTGTTTTGCATACTATGTGATGTGCTGCAGCTATCTATGTTACTGTACATTTTAATTATGATGTTTCCTTGCATGTTTGTGTGATAGTGACAAACAGAACGTTTTAAGGAAATGTCAAGTTTACTATAGCATTAGCCCATTCATAGCCGCTAACTACCTTTTCTGGCCTATTGATGATAGTAACTTCTGAccgggggagttttgttaagagccccGACGCTCTTTCTGAATGTGAACACGCATTGCTTCCGGGACGAATTTTGAAACATAAGGAACGTACACTaccgtttaaaagtttggggtcagttagaaatgtccttgtttttgaaagagaagcacattttttgtccattaaaataatttcaaattgatcagaaatacagtgtagacattgttaatgttgtaaatgactattgttactggaaacagctgatttttaatggaatatctatattggcgtacagaggcccattatcagaaaccatcactcctgtgttccaatggcacgttgtgttagctaatccaagattatcattttaaaaagctaattgatcattagaaaacccttttgcaattatgttagcacagctgaaatctgttgttctgattaaagaagcaataaaaactttcaaaaacaaggatatttctacgtgaccccaaacttttgaacagtagtgtatatattcATATCAGTGAGAAAAACATTTACTTTATAGGGTTAAGGTTCCCACACAGCCATTTCTCCATGTTACAgtgcttgtttatggaaaacagACGGAAAACAGAAGCGACTACCTGTGTTAATTAGCTATCTGCGtctccgaacacctgtgtgtaaacggaaggcagacgccacaaacgtgttgtcactGAACAATACTGTCGGCTGTGTTAATACTGGTTAAAACAGTGTACAGTTAGTGTGTATTTTCCATTTGTGAAATGATGTTGATATGAAATGAAAGTAGAGGGATTTATGTTTCTATAACCGTACCCCAATTGAGAATCGATTTCTGTTTAGATGCTGTTTTGGCTGGCAGAGCCAAATTTGccgatttgccctttaaacagaacACGTAAGGTCCTTGAACTATAAGGAGTAACGCTAGCCTCCTTTGACCCATTATTGGGCAGCATCTGCTGCTGTATGTCTTACGTGGTGAATACATATAGCCGATCTGAAATGGAGGTACAGATCAAATTAACCTCAAACTACCAATGAAACCCAGAGCCGTTGTTTTGCCCTAACACCCTAGTGATGAATGCATAACCTAAATGGTAAGAGAATCATGAGGTTGAAAAATATTTGAAAGATATTAGGACTAAGAACATTTTTCAAAAAGTTTCATGGTCAGAAAGCATGttacttttctactgtatttttaATGGAATTAAAAGTCATATTTTTCTACA
>XM_036970124.1
GGCCAAAGTTGAAAGTTTACCATGCCCGATGTGAAGAACGAAAGCATGCACACCGATGTGGCCAAGTTTATTAAATTAGTTAAAATGTAACGTTATCTTGTTGTGTTTGTGTTAACGTTTGAATATGTCTTTAAGGAAGGTGCATGCTTCAAATCAAAAATTGAACCATTTGATCTACCAGTATTTAAAAGAGAATGGCTTCCAGAAAGCTGCAGAAGAACTCAAGAAGCATGTGAAGAAGGGTGGAGAACCAGAAGCCTTGTCAACATCACTACTGGAGATCTACAATAAATGGTTCGGAGATACTTCCAAGACCACAGAAAAGGGAACAGAACCGGATTCTTCCAAGTTAAAAAAGAACTGTCAAGCAGACCCTGAAAGCAGCACAGAGAGCTCAAGTTCAGCAGAGGAAGAAACAAAACCTGTTAAAGGCTCCCAGACCCCAAAGCATCAGAGCCCAGCTACTGCCAGACCAGCTAAGGGCAGGGCTGCAGTGCAGAGCACCTCTGGAGGAAAGGCCACAGTGGGGGAGAGCTCTGGGTCTGACAGCTCAGAGGTCTCTGAAGACTCAGAGAGTGAGGAGACACCACCACAGAAAATCCCTGTGACACCCAAAGCCAATCATGTTCCAGCTGCAAAGGTCAAGGCCAGGTCAGCGGTCACACCATTGACCCTGAACAAGAAACCAGCAGAGAGCTCAGACAGTGACAGCAGCTCAGGGAGTGAAGATGAAAGCCAGAGTCTGCTTCCACAGACAACAGCTGCCACAACTACAGCTACACCAGTGAAGCAACCAAAACCAAGTTCAACAGCCAAGACAAAAGCCACTCCTGCTACCCCAGCTAAACCAGTGGTTGCTGCTACGCCAAGCAAGGCACCATCTACTGCCCCAGCCACACCAAAAGGAAAGAAGGTGACCACAAAAGACAAGAAAGCAACAGCAACAAAGAAAGCACAGGCCTCAGCTTCATCAGCCAAGAGGAAGAGATGTGAAGAGAAACCAGGGGACATGCCCGCTAATAACAAGAGGAAGAAGCCCTCCCCTCCACAGGCGGCGACTGTCATGGTCGCCATGCCTCAGAcccctcctgttcctcctcctacTGGGGGTGACGAGTCTGACTCAGACTCTGACACCGAACTGGATGTGGAGAAGTGGAAGAAACTGGCACGGGAACTgtcagACGCTGATATTGCCAAAATAGACACCATCACTGCACTGAATGCTCCACCTGCTCCCACCTCACCTGCCTCAGCAGCGAAGAAAACAAGAGCACCGAGGAAGCCCAGGGCTAAATCTGCACTGGAAACACCCCCCAATCCCAGGGCCAAATCTGCAACGAAAACACCAAAACCCAAGGCTGACGCTGCAGTGAAAAAGGCTGGTCATGCTAAAAAGTTCAAAGCTACAACTGAAAAAAAAGCCATGGCTGAGGAGAATGGGAAGACCAAGACACCAGCAAAAGACAGTAAAGCCAAGTCTAGTCAAGTGAAGAAGGCAgcacctccctccccatcccctgaAGGCCAAGCAGAGGAGATCAACAGTAATACAGCTGACCTAATAGTTGTAGCAGACAAACAGCCACCCTCCATGCTCTCTACCACAACACTTAATGGAAAACAGACAGCCAAGAAAGGAAAGAGGAAAAATGGGAACATTAGTAAGGCTAAAGCAGATAAGAATCTACCAGAacccaagaagaagaaaaagaaaaaggaGATTGTAGAGGAGAAGACGGaaccagagaagaagaaaaaggagAAGACGACTAAGGAGAATGGGGCagaaaaagagaaggaaagaaagaagaaaCAGGAGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACAGGAGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACGGGAGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACGGGAGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACAGGAGAAGATGTGCAGGGACAATGAGACTGAGAAGAAACAGGAGAAGATGTGCAGGGACAATGAGACTGAGAAGAAACAAGAGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACAAGAGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACGGGAGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACGGGAGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACAGGTGAAGATGAGCAGGGACAATGAGACTGAGAAGAAACGGGGAAAAGACAAGAACAAGACCAAAGGGAATGGCGTTAAAAGTGACCCACTACCTCCATCCACCACAGGAACGCCTGATCCTCcaacagagaagaagaaaaAGAAGAACAAGCTGAAACTCTCAGTGGAGATTGCAGTGCCTGAGACTCCGGTCACCCCTGTACAGGCATCCACAAAGACCCCTCCTAGAAAGAAAAATAAATCATCTAAGAGTAAGTCAGGCCTTTAGAGATGAAGGTCACCTACAATGGGGCTGTGTCAAGTGTGGACCTGGACCCAGGATTCTACCTAAATGGTAGTAATGGTAAAGACTGTCTGTCCACACAATGGTCTCCCTAGACCAAATCAACTGGGCCAAGCTTTTCAAAAGTTATCTGGATTTCGCCTATCGGAGAGGTTGaaatgcatagaaatagaatgaatagaacagaagtccccattcaagtcaatgatttgTCTgtcctattcattctatttctatgcatttaattGTATCCGATAGGCGAAATCCAGATAGATAACGTTAGAAAAACCGGGCCTTGGGGATTTGTTTGATTTTTTTTACAacattgtatactgtattaaATGAACACTTTTCCTGTTGGTACATTTTATTGaagttaaaacattcatttttaTTAGTTTATCCCCTCCAAAATAATTGTACAGTTTGCTGTTTTGCATACTATGTGATGTGCTGCAGCTATCTATGTTACTGTACATTTTAATTATGATGTTTCCTTGCATGTTTGTGTGATAGTGACAAACAGAACGTTTTAAGGAAATGTCAAGTTTACTATAGCATTAGCCCATTCATAGCCGCTAACTACCTTTTCTGGCCTATTGATGATAGTAACTTCTGAccgggggagttttgttaagagccccGACGCTCTTTCTGAATGTGAACACGCATTGCTTCCGGGACGAATTTTGAAACATAAGGAACGTACACTaccgtttaaaagtttggggtcagttagaaatgtccttgtttttgaaagagaagcacattttttgtccattaaaataatttcaaattgatcagaaatacagtgtagacattgttaatgttgtaaatgactattgttactggaaacagctgatttttaatggaatatctatattggcgtacagaggcccattatcagaaaccatcactcctgtgttccaatggcacgttgtgttagctaatccaagattatcattttaaaaagctaattgatcattagaaaacccttttgcaattatgttagcacagctgaaatctgttgttctgattaaagaagcaataaaaactttcaaaaacaaggatatttctacgtgaccccaaacttttgaacagtagtgtatatattcATATCAGTGAGAAAAACATTTACTTTATAGGGTTAAGGTTCCCACACAGCCATTTCTCCATGTTACAgtgcttgtttatggaaaacagACGGAAAACAGAAGCGACTACCTGTGTTAATTAGCTATCTGCGtctccgaacacctgtgtgtaaacggaaggcagacgccacaaacgtgttgtcactGAACAATACTGTCGGCTGTGTTAATACTGGTTAAAACAGTGTACAGTTAGTGTGTATTTTCCATTTGTGAAATGATGTTGATATGAAATGAAAGTAGAGGGATTTATGTTTCTATAACCGTACCCCAATTGAGAATCGATTTCTGTTTAGATGCTGTTTTGGCTGGCAGAGCCAAATTTGccgatttgccctttaaacagaacACGTAAGGTCCTTGAACTATAAGGAGTAACGCTAGCCTCCTTTGACCCATTATTGGGCAGCATCTGCTGCTGTATGTCTTACGTGGTGAATACATATAGCCGATCTGAAATGGAGGTACAGATCAAATTAACCTCAAACTACCAATGAAACCCAGAGCCGTTGTTTTGCCCTAACACCCTAGTGATGAATGCATAACCTAAATGGTAAGAGAATCATGAGGTTGAAAAATATTTGAAAGATATTAGGACTAAGAACATTTTTCAAAAAGTTTCATGGTCAGAAAGCATGttacttttctactgtatttttaATGGAATTAAAAGTCATATTTTTCTACA

Function

NR:

description
proteoglycan 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970123.1 False 4517 mRNA 0.43 10 25517933 25536990
XM_036970124.1 True 4333 mRNA 0.43 11 25517933 25536990

Neighbor

gene id symbol gene type direction distance location
LOC110504297 LOC106611877 coding upstream 209291 25304278 ~ 25308642 (+)
hmgxb3 hmgxb3 coding upstream 302553 25202079 ~ 25215380 (+)
LOC100136157 LOC100136157 coding upstream 326455 25183222 ~ 25191478 (+)
LOC110504826 LOC106611870 coding upstream 336525 25091632 ~ 25181408 (+)
LOC110504823 LOC106604841 coding upstream 437707 25065488 ~ 25080226 (+)
LOC118946013 NA coding downstream 3986 25540976 ~ 25551549 (+)
LOC110504839 LOC106611885 coding downstream 14587 25551577 ~ 25576248 (+)
si:dkey-74k8.4 aldob coding downstream 42219 25557578 ~ 25586728 (+)
LOC110504411 LOC106611888 coding downstream 51361 25588351 ~ 25607112 (+)
LOC110504842 LOC106611889 coding downstream 68536 25605526 ~ 25611169 (+)
G2265454 NA non-coding upstream 96614 25420334 ~ 25421319 (+)
G2265460 NA non-coding upstream 115936 25354526 ~ 25401997 (+)
G2265513 NA non-coding upstream 149113 25362932 ~ 25368820 (+)
G2265452 LOC106611878 non-coding upstream 196322 25320864 ~ 25321611 (+)
G2265453 LOC106611878 non-coding upstream 203854 25311128 ~ 25314079 (+)
LOC110504413 LOC106611901 non-coding downstream 279919 25756889 ~ 25820010 (+)
G2265698 NA non-coding downstream 287381 25824371 ~ 25824729 (+)
G2265700 NA non-coding downstream 298931 25835921 ~ 25836374 (+)
G2265731 NA non-coding downstream 414662 25951652 ~ 25951961 (+)
G2265425 LOC106611874 other upstream 273604 25215651 ~ 25244329 (+)
G2264345 NA other upstream 1326898 24190750 ~ 24191035 (+)
G2264344 NA other upstream 1327581 24190073 ~ 24190352 (+)
G2264210 LOC106582338 other upstream 1636901 23880781 ~ 23881032 (+)
G2264113 LOC100136700 other upstream 1653960 23855609 ~ 23863973 (+)
G2265625 NA other downstream 88155 25625145 ~ 25626856 (+)
LOC110504852 LOC106611898 other downstream 287050 25820435 ~ 25838497 (+)
G2265744 NA other downstream 441145 25978135 ~ 25978638 (+)
LOC118946064 NA other downstream 752735 26289725 ~ 26292004 (+)

Expression


Co-expression Network