LOC118946013


Basic Information

Item Value
gene id LOC118946013
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25540976 ~ 25551549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041144.1
GGTGGTGGAACTGTTCAAGAGGCTGGAAAAGGAGGTCCACCTGAGAGCTCTGAGGAAAGCCCTCCGCAGCCCCTAGCCCACCTCACCCTCATCATGCATGAgggtctttctctGCAGCAGAGCCGTATTGCGGTCCTGGTGACCAACCTCAGTGGCCCCAACCTTCAGTGGCTTGTGGAGGCTGCCTGCTGTCTCTACGAGCTGTCCCACTCCCTCCACACCCTACCTGATCATCTTCCTGTCTGGACAGAGGCCCAAATTCAGTCAGTCCCACAGTTCTGTCAATGGAGTGGACCCACCTGCCATTGTCTCTCCCAGCTCGTCTCAGCGAACCACGCAGCAGGGAGAATCATCCCGTAAGTTAACATTATGGCCTTAGCTTGGTGATAATAATATACTATATTGTAGAAACGTCATTAGACACCTTTCAGAGATGCCATTGAGAGATCCATTCATAGTCAGTATTATGCTctcctgtcagacagacagacagacagactgccactgtctgtctgtctgtctgtaatatgtAGGGGAAAGGGTTCCATTTGGGGACACACACTATAACCTgggtgtttttatttttaaaatgtacctttatttaaccaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgccttgttcaggggcagaacaacatattttgaccttgtcagctcggggattcgatcagttacaagaccaacgctctaaccactaggctacctaacgtCCCTGGGTGACGTTACAACCTGCCGGTGTAACATGTCACCCAGGAGGACCAGCTACTATGTATTGTTGCCATGGATATAGTACTATTATACAGGATGTGGTGGCACTGCGTGATTCACAGTCTGTTTGTTGCTCAATAGCAACGTGTACaaaatggcgccgacagagagggccgtctcgcttctagtccttaggaactttgctgtattttgtttttttatgtattatttcttagatagttagcccagaaaatcttgtGTTATTACTTTTTCAAATATTACAAGTATTTCACTaaactcgcaataacatctgctaaccatgtgtatgtgaccaataaaatgttatttgactTGGTGGCCCAATGGACTCTTCTACAGTGCACTTCCCTCCTGCTGACACTTGGTGGTGGTGTTGCTAAAGGGAGTATAGAGGAGAGAATGGAGCTGTTGATCTGGCCCCTGCTGCCCTGGGTGGGGAACCTGCTGTTATCTGGGCCCCTAGGGGTCCTGCAGACCCAACTAAACGATAGCCGTCTCCTGGATGCTCTGTGTGCGTTTGCTCAGGTCTTCCTCCAGACCCACCTAGACCTGTCCAGAGAGAGGGTCTGGGTCCTCAACAACCACACAGtTGGGGGAGGAGTTTGTGAGGCAGAGTGGGCTCCCCCTGCTGGAAGCCACCCAGTATAACAGCCAGGATAATTTACACCTCAGAGCAACACACCTGCTGGAACATCCCCTGCCCCCACGGTGAGGACTCTTGCCCTAACAcaggctgtgtttgtgtgtatgtccaGACTTTTAAGAGTGCTTTGTTCTGTTGTTAAAGCTGGAAACCTCTTCATCCCCATGAGGAACCTGCAGAACAGGAGTGCCACAAAAAAAGACTTCCAAATGTTTTAACAAGGTTTAGTCAGAAGACCTACCATgtacatttaaaatgtttttatgaaATGATGTGATGTATAAATGTTTTTATGAAATGATGTGATGTTCAAATGTTTTTTCAATAATATGATGTGCTGGATATCTGTACAGTAAAACAATCAGATGTTATTTTTATACTGTTTTTATAAAATGCAAAATTCTAATAACAGAATGTGATTTGTCTTAAGAACCTCTTGATTTCAATAGATAGCAGATGTGTTTTGACCGGTAGCCTAGGAGTTAACAACTGTCGATGTGCGcttgagcaaggcacctaaccccaattgcttctgtaagtcactctggataagagggtctcctcaatgactcaaatgtaaattaattgttttgtttttggagAAACGGGAAAAAGTATCTGCAGTCAGACGCAAATGTATTTTAATAGAGGCTAAGCTTTTGATCAGTCCACCTTCATCAGAGCATATTAAAAGGTGTGTGTGCGCGAGATTGACCCTGTAACCTCTTCCCCAGGCTAATTGTGCATAGCCAGGAAGTGTCCGGTGAACGAGGTTAGTGACTCAACAACAGTATGTTGTACACCATGTTTCCATCAGTCATCAGGTTTTATAAAGGTTGATTACCTCTGATAACATTACCTTTGTCTGGGTTGTGTGTTTCAGAAAATCTAAGAGGCCAGCCCTTGACCATCCCAGTGGTCAGATAGCCAGAGAGGCTGGCTGGTACAATGTGTGTGTGGAATAGTGAGACCGACTGATAGTGTCGGATAGTTAAAACGTGCTCCATACCTGTCCTATACCTGCATGACACCTGATAAGGTATGGGAACGTCCCTTAGTCGACACTCACCTGTAGAGCCTGTCAGCTGGTGCAGAGGTACAGCCTGGCTCCTTAGATCCCCTGCCAATCAACGCCCGTCCTAGAGACCTGCAATCTACTCCGtctgtttacattggcaaagTTCAGACAAAAAGGCCAACGATAACAGGGTTGAAAAGGGTAGACTATAATATCTGTGATTGACCTATTTTCTTTCAGAGAGTCAAGTTGTTTTGAATTTCAATTAAAGAAAAAGTTTGAATGTTGGGAAAACGGTCAACCAAGTGAAAAATGGATGCCCATTTGCAGACTACCCCAAGAAGTATGTGTTATCAAAATAGAACAACAGGTTGGCATCCCTGTGATCTCCAAGGTCAATGGAAGTACTGGGCTCTCGAAATGTGTTGGTTTTTACAAAGTCAATATCGGTCAGCGTACTAGTAATATTGCCACTTAAATGTATTAGGCTCACATGGGCCTTTTACATGATATTCCTTTTTACAAGATATTACATAGAAAACAGACATGTTTTATAGCATGTCATCTGTTATGTTTTTACTTGTACTCTTCTTCTCTGCTATCTGCACTTCTCTTCTTTCTGACCCCTCCCTCCTCTGACCCCTTCCTCTctgacccctcctccctctt

Function

NR:

description
PREDICTED: transmembrane and coiled-coil domain-containing protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041144.1 True 3133 mRNA 0.45 4 25540976 25551549

Neighbor

gene id symbol gene type direction distance location
LOC110504832 LOC106611862 coding upstream 3986 25517933 ~ 25536990 (+)
LOC110504297 LOC106611877 coding upstream 232334 25304278 ~ 25308642 (+)
hmgxb3 hmgxb3 coding upstream 325596 25202079 ~ 25215380 (+)
LOC100136157 LOC100136157 coding upstream 349498 25183222 ~ 25191478 (+)
LOC110504826 LOC106611870 coding upstream 359568 25091632 ~ 25181408 (+)
LOC110504839 LOC106611885 coding downstream 28 25551577 ~ 25576248 (+)
si:dkey-74k8.4 aldob coding downstream 27660 25557578 ~ 25586728 (+)
LOC110504411 LOC106611888 coding downstream 36802 25588351 ~ 25607112 (+)
LOC110504842 LOC106611889 coding downstream 53977 25605526 ~ 25611169 (+)
mif mif coding downstream 63643 25615192 ~ 25616315 (+)
G2265454 NA non-coding upstream 119657 25420334 ~ 25421319 (+)
G2265460 NA non-coding upstream 138979 25354526 ~ 25401997 (+)
G2265513 NA non-coding upstream 172156 25362932 ~ 25368820 (+)
G2265452 LOC106611878 non-coding upstream 219365 25320864 ~ 25321611 (+)
G2265453 LOC106611878 non-coding upstream 226897 25311128 ~ 25314079 (+)
LOC110504413 LOC106611901 non-coding downstream 265360 25756889 ~ 25820010 (+)
G2265698 NA non-coding downstream 272822 25824371 ~ 25824729 (+)
G2265700 NA non-coding downstream 284372 25835921 ~ 25836374 (+)
G2265731 NA non-coding downstream 400103 25951652 ~ 25951961 (+)
G2265425 LOC106611874 other upstream 296647 25215651 ~ 25244329 (+)
G2264345 NA other upstream 1349941 24190750 ~ 24191035 (+)
G2264344 NA other upstream 1350624 24190073 ~ 24190352 (+)
G2264210 LOC106582338 other upstream 1659944 23880781 ~ 23881032 (+)
G2264113 LOC100136700 other upstream 1677003 23855609 ~ 23863973 (+)
G2265625 NA other downstream 73596 25625145 ~ 25626856 (+)
LOC110504852 LOC106611898 other downstream 272491 25820435 ~ 25838497 (+)
G2265744 NA other downstream 426586 25978135 ~ 25978638 (+)
LOC118946064 NA other downstream 738176 26289725 ~ 26292004 (+)

Expression


Co-expression Network