LOC110504846 (LOC106611893)


Basic Information

Item Value
gene id LOC110504846
gene name LOC106611893
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25627580 ~ 25630292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583696.2
CACTGCTTCGAGATAAACTGCTTAGCGGTTTCTACGCATGCCTCGGAGTTCCGGTATAAAACGTGACATCACTAATATATAGTAGCTGCCTGTCTCTTTTACCTCTGTACAGTTCTAGTAGAGATAGGTAGGCGGTTTTGTAACTAGTTGATTTGTTGACGCACACCAAAAAATAACGTTTGGAAAGTGGAGGAAGAGATACCTGACTCTGGGCATTGGTGTGATCTGTAGGAGGCTAAATCCAAGTCTTTCCATTATAGTGAACCAAACTGGGAAACAAGGGGGGCAGCTCATCCATAGAAGACTGAACTCTGGGACTGGTACCAATAAGGGAAGGGGGGTTGATTTTTCCAGTGTTGGATTGATGTTGTTGCAGTTATGTCAGAGGCCATCCTCACCTTCCAGTACCAGCTCAATGGAGTCATGGAAACAGTCCTCAAAACTGCTGTACATGAGATCACTCGGCTGGTGAAGGACAGCTTCCTGGAGGAAGTGACATGGAGCAAGCAGGAAGTGGACGTCTTGAAGGAGAGGCTGCAGCAGTGTGagcagagatggagggatggcgaggaggagaggaagagggcagttgaggagagagagcagaaaaagAAGAGGGAAGAGTGTGAGCCGAGGGGGATGTGTAGAAGATGTGGTTGTGCTGGAGACactgaggagagggaaaaggCTCTGTTAGGAGCAGAGGAAGGTTGTGCTATCAAACAGGAGATGCTCCAGCCAGGTGGACCCAGCACTCTCTCAGAGAGAGAATGTCCACAGGAAATGGCCACACCCAGCTCTTCCTGTGTCTCTGAAAGGATGGAAGAGAGGGTGGTCCATATCAAAGAGGAGTCCGATGACTGGGGGGACTTGGTTACCCAGATGATCACATCCCCAGATTCCCCCATGATGAGCCTGAGTCATTTGCAGCGATTGAGCTCACATCCTGGGGGATGGACCAGTGAGCCTCTACCTCCAGCACAATTGGCCAGGGACCCTCCACCTCTAACTCCAGCACCATGGAACAGGAAGGAGCAGCACCTACTCCCAAGGTCATTGAAACCCACCCAGGGGACAGAGCATGCTGTAGTGGCCCTCGAGACCAGTCCCAATGGCCTGAGCATCAACACAATGGCAGAGCTGGGGGTCAAACCCTTCAGCTGTCcacactgtgggaagagtttcccTCAGCTCCGAAATCTCAAACACCACCAGAAGTACCACCACACAGGGAAGAAGGCCTTCACCTGCTCCCAGTGTGGTAAGGGTTTTGTGTACATGTCCCACTTCAGGGTACACATGCAGCGCCACACGGGGGACAGGCCATTCAGctgctctcagtgtgggaagagcttcagccTTCAGAGTGGCTTAAAGAAACACAGGGTCATTCACACTGCAGAGATCCCTTATGTGGTGGAAATTAAATATTAATTACATACTATACTGTTTAATTAGACATACTATGCTGTTTTTACTTAAGATAATTGTCTACTGTTATGTTATTTTTACTGATACAGGCTTGTCTTGTGACTTAGTCATAAATCTGAGCGTACAGATTTATGAGCTGCTTGGATGTGACACCGTATGTGACCTCCTGTGTTTACGATCGGCAGGAATTTAGCTATGTGGGATTTGCAGGAAGGAACAGCGAGTGGAGGCGATATCAGCTATCATGATCTACACAGATGAACTAAATTACTTCTTACAACTCTGTTCCCAGGGCATGTTTCTGCACATCTGCTAACTGTCACAAAGATAAAAGGATGTACTTTCTATAAAAGGCGAAAGACAGCTCTGTTCATGGAGCTTTTTAACTCTGACTATTTTTTGTGATGGTTGATTGCTTAATTTTTGCAAATCTTAAAGTTGTTTTGAAGAATAGTCTTTCTCCTTTTGGTTAGAAATACTTACCATTGCACGGAATGTGGGAACAGATTCAATTCTAGAGCAGACATGAACAGATTCATGCAGCAAGGTAGACCTTTGAGCAGAAGCAGGTTGATTTAGAAAAATAGAGTGGGGAAAAAAACTGCCCACGTGTACTGTGTACTATGTTCAATGTGTTGTTGCTGACGCATTTAATGTTGAGAGGAATAAATTATTCTCATCCTTTCTTAAA
>XM_021583697.2
CACTGCTTCGAGATAAACTGCTTAGCGGTTTCTACGCATGCCTCGGAGTTCCGGTATAAAACGTGACATCACTAATATATAGTAGCTGCCTGTCTCTTTTACCTCTGTACAGTTCTAGTAGAGATAGGTAGGCGGTTTTGTAACTAGTTGATTTGTTGACGCACACCAAAAAATAACGTTTGGAAAGTGCTTTCCCATATTTCTAGGAGGAAGAGATACCTGACTCTGGGCATTGGTGTGATCTGTAGGAGGCTAAATCCAAGTCTTTCCATTATAGTGAACCAAACTGGGAAACAAGGGGGGCAGCTCATCCATAGAAGACTGAACTCTGGGACTGGTACCAATAAGGGAAGGGGGGTTGATTTTTCCAGTGTTGGATTGATGTTGTTGCAGTTATGTCAGAGGCCATCCTCACCTTCCAGTACCAGCTCAATGGAGTCATGGAAACAGTCCTCAAAACTGCTGTACATGAGATCACTCGGCTGGTGAAGGACAGCTTCCTGGAGGAAGTGACATGGAGCAAGCAGGAAGTGGACGTCTTGAAGGAGAGGCTGCAGCAGTGTGagcagagatggagggatggcgaggaggagaggaagagggcagttgaggagagagagcagaaaaagAAGAGGGAAGAGTGTGAGCCGAGGGGGATGTGTAGAAGATGTGGTTGTGCTGGAGACactgaggagagggaaaaggCTCTGTTAGGAGCAGAGGAAGGTTGTGCTATCAAACAGGAGATGCTCCAGCCAGGTGGACCCAGCACTCTCTCAGAGAGAGAATGTCCACAGGAAATGGCCACACCCAGCTCTTCCTGTGTCTCTGAAAGGATGGAAGAGAGGGTGGTCCATATCAAAGAGGAGTCCGATGACTGGGGGGACTTGGTTACCCAGATGATCACATCCCCAGATTCCCCCATGATGAGCCTGAGTCATTTGCAGCGATTGAGCTCACATCCTGGGGGATGGACCAGTGAGCCTCTACCTCCAGCACAATTGGCCAGGGACCCTCCACCTCTAACTCCAGCACCATGGAACAGGAAGGAGCAGCACCTACTCCCAAGGTCATTGAAACCCACCCAGGGGACAGAGCATGCTGTAGTGGCCCTCGAGACCAGTCCCAATGGCCTGAGCATCAACACAATGGCAGAGCTGGGGGTCAAACCCTTCAGCTGTCcacactgtgggaagagtttcccTCAGCTCCGAAATCTCAAACACCACCAGAAGTACCACCACACAGGGAAGAAGGCCTTCACCTGCTCCCAGTGTGGTAAGGGTTTTGTGTACATGTCCCACTTCAGGGTACACATGCAGCGCCACACGGGGGACAGGCCATTCAGctgctctcagtgtgggaagagcttcagccTTCAGAGTGGCTTAAAGAAACACAGGGTCATTCACACTGCAGAGATCCCTTATGTGGTGGAAATTAAATATTAATTACATACTATACTGTTTAATTAGACATACTATGCTGTTTTTACTTAAGATAATTGTCTACTGTTATGTTATTTTTACTGATACAGGCTTGTCTTGTGACTTAGTCATAAATCTGAGCGTACAGATTTATGAGCTGCTTGGATGTGACACCGTATGTGACCTCCTGTGTTTACGATCGGCAGGAATTTAGCTATGTGGGATTTGCAGGAAGGAACAGCGAGTGGAGGCGATATCAGCTATCATGATCTACACAGATGAACTAAATTACTTCTTACAACTCTGTTCCCAGGGCATGTTTCTGCACATCTGCTAACTGTCACAAAGATAAAAGGATGTACTTTCTATAAAAGGCGAAAGACAGCTCTGTTCATGGAGCTTTTTAACTCTGACTATTTTTTGTGATGGTTGATTGCTTAATTTTTGCAAATCTTAAAGTTGTTTTGAAGAATAGTCTTTCTCCTTTTGGTTAGAAATACTTACCATTGCACGGAATGTGGGAACAGATTCAATTCTAGAGCAGACATGAACAGATTCATGCAGCAAGGTAGACCTTTGAGCAGAAGCAGGTTGATTTAGAAAAATAGAGTGGGGAAAAAAACTGCCCACGTGTACTGTGTACTATGTTCAATGTGTTGTTGCTGACGCATTTAATGTTGAGAGGAATAAATTATTCTCATCCTTTCTTAAA
>XM_021583698.2
CACTGCTTCGAGATAAACTGCTTAGCGGTTTCTACGCATGCCTCGGAGTTCCGGTATAAAACGTGACATCACTAATATATAGTAGCTGCCTGTCTCTTTTACCTCTGTACAGTTCTAGTAGAGATAGGTAGGCGGTTTTGTAACTAGTTGATTTGTTGACGCACACCAAAAAATAACGTTTGGAAAGTGTGAACCAAACTGGGAAACAAGGGGGGCAGCTCATCCATAGAAGACTGAACTCTGGGACTGGTACCAATAAGGGAAGGGGGGTTGATTTTTCCAGTGTTGGATTGATGTTGTTGCAGTTATGTCAGAGGCCATCCTCACCTTCCAGTACCAGCTCAATGGAGTCATGGAAACAGTCCTCAAAACTGCTGTACATGAGATCACTCGGCTGGTGAAGGACAGCTTCCTGGAGGAAGTGACATGGAGCAAGCAGGAAGTGGACGTCTTGAAGGAGAGGCTGCAGCAGTGTGagcagagatggagggatggcgaggaggagaggaagagggcagttgaggagagagagcagaaaaagAAGAGGGAAGAGTGTGAGCCGAGGGGGATGTGTAGAAGATGTGGTTGTGCTGGAGACactgaggagagggaaaaggCTCTGTTAGGAGCAGAGGAAGGTTGTGCTATCAAACAGGAGATGCTCCAGCCAGGTGGACCCAGCACTCTCTCAGAGAGAGAATGTCCACAGGAAATGGCCACACCCAGCTCTTCCTGTGTCTCTGAAAGGATGGAAGAGAGGGTGGTCCATATCAAAGAGGAGTCCGATGACTGGGGGGACTTGGTTACCCAGATGATCACATCCCCAGATTCCCCCATGATGAGCCTGAGTCATTTGCAGCGATTGAGCTCACATCCTGGGGGATGGACCAGTGAGCCTCTACCTCCAGCACAATTGGCCAGGGACCCTCCACCTCTAACTCCAGCACCATGGAACAGGAAGGAGCAGCACCTACTCCCAAGGTCATTGAAACCCACCCAGGGGACAGAGCATGCTGTAGTGGCCCTCGAGACCAGTCCCAATGGCCTGAGCATCAACACAATGGCAGAGCTGGGGGTCAAACCCTTCAGCTGTCcacactgtgggaagagtttcccTCAGCTCCGAAATCTCAAACACCACCAGAAGTACCACCACACAGGGAAGAAGGCCTTCACCTGCTCCCAGTGTGGTAAGGGTTTTGTGTACATGTCCCACTTCAGGGTACACATGCAGCGCCACACGGGGGACAGGCCATTCAGctgctctcagtgtgggaagagcttcagccTTCAGAGTGGCTTAAAGAAACACAGGGTCATTCACACTGCAGAGATCCCTTATGTGGTGGAAATTAAATATTAATTACATACTATACTGTTTAATTAGACATACTATGCTGTTTTTACTTAAGATAATTGTCTACTGTTATGTTATTTTTACTGATACAGGCTTGTCTTGTGACTTAGTCATAAATCTGAGCGTACAGATTTATGAGCTGCTTGGATGTGACACCGTATGTGACCTCCTGTGTTTACGATCGGCAGGAATTTAGCTATGTGGGATTTGCAGGAAGGAACAGCGAGTGGAGGCGATATCAGCTATCATGATCTACACAGATGAACTAAATTACTTCTTACAACTCTGTTCCCAGGGCATGTTTCTGCACATCTGCTAACTGTCACAAAGATAAAAGGATGTACTTTCTATAAAAGGCGAAAGACAGCTCTGTTCATGGAGCTTTTTAACTCTGACTATTTTTTGTGATGGTTGATTGCTTAATTTTTGCAAATCTTAAAGTTGTTTTGAAGAATAGTCTTTCTCCTTTTGGTTAGAAATACTTACCATTGCACGGAATGTGGGAACAGATTCAATTCTAGAGCAGACATGAACAGATTCATGCAGCAAGGTAGACCTTTGAGCAGAAGCAGGTTGATTTAGAAAAATAGAGTGGGGAAAAAAACTGCCCACGTGTACTGTGTACTATGTTCAATGTGTTGTTGCTGACGCATTTAATGTTGAGAGGAATAAATTATTCTCATCCTTTCTTAAA

Function

NR:

description
zinc finger protein 235-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583696.2 False 2122 mRNA 0.47 3 25627580 25630292
XM_021583697.2 False 2139 mRNA 0.46 3 25627580 25630292
XM_021583698.2 True 2051 mRNA 0.47 3 25627580 25630292

Neighbor

gene id symbol gene type direction distance location
mif mif coding upstream 11265 25615192 ~ 25616315 (+)
LOC110504842 LOC106611889 coding upstream 16411 25605526 ~ 25611169 (+)
LOC110504411 LOC106611888 coding upstream 20468 25588351 ~ 25607112 (+)
si:dkey-74k8.4 aldob coding upstream 45372 25557578 ~ 25586728 (+)
LOC110504839 LOC106611885 coding upstream 51332 25551577 ~ 25576248 (+)
LOC110504843 LOC106611891 coding downstream 6055 25636347 ~ 25642057 (+)
LOC110504845 LOC106611890 coding downstream 12336 25642628 ~ 25653433 (+)
LOC110504847 LOC106611896 coding downstream 24089 25654381 ~ 25664000 (+)
LOC110504848 LOC106611897 coding downstream 35438 25665730 ~ 25670755 (+)
LOC110504850 LOC106611902 coding downstream 49901 25680193 ~ 25703747 (+)
G2265454 NA non-coding upstream 206261 25420334 ~ 25421319 (+)
G2265460 NA non-coding upstream 225583 25354526 ~ 25401997 (+)
G2265513 NA non-coding upstream 258760 25362932 ~ 25368820 (+)
G2265452 LOC106611878 non-coding upstream 305969 25320864 ~ 25321611 (+)
LOC110504413 LOC106611901 non-coding downstream 186617 25756889 ~ 25820010 (+)
G2265698 NA non-coding downstream 194079 25824371 ~ 25824729 (+)
G2265700 NA non-coding downstream 205629 25835921 ~ 25836374 (+)
G2265731 NA non-coding downstream 321360 25951652 ~ 25951961 (+)
G2265743 NA non-coding downstream 347593 25977885 ~ 25978096 (+)
G2265625 NA other upstream 724 25625145 ~ 25626856 (+)
G2265425 LOC106611874 other upstream 383251 25215651 ~ 25244329 (+)
G2264345 NA other upstream 1436545 24190750 ~ 24191035 (+)
G2264344 NA other upstream 1437228 24190073 ~ 24190352 (+)
LOC110504852 LOC106611898 other downstream 193748 25820435 ~ 25838497 (+)
G2265744 NA other downstream 347843 25978135 ~ 25978638 (+)
LOC118946064 NA other downstream 659433 26289725 ~ 26292004 (+)
LOC110504416 diaph1 other downstream 731700 26298775 ~ 26483992 (+)
G2266668 LOC106611853 other downstream 960974 26588592 ~ 26620948 (+)

Expression


Co-expression Network