LOC110504850 (LOC106611902)


Basic Information

Item Value
gene id LOC110504850
gene name LOC106611902
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25680193 ~ 25703747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970028.1
CTCTCTcgctaccactctctctccctcacacacacacgcgtgcgctTTCACACACATCCATACGCCAGAGCTGACACTGCAGCAGAAAAACAGCCTGGTAGCGAAAGAGAGGGACTCCATTGACTGTGAGAGAGGACTGTCTTCATGGAGGCTCTATCGAGGAGTACCTGACCAGAGGcaatgggctgtgtgtgtgtgtgttaatgtgttaggtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagcaccccaGCAAGAGAAGCAGCACTGCAGATACTGACTGAGTCCGGGGCTCAGCTTGGAGCATCGACCGAGAAACGAAGATCCATTGCTCtcaacctctgtgtgtgtgtgtgtcagtgaacgTGTATGTTTGTGTAAGAGCTGGTGTGTCATTCACTGCTCTGCCTGCGTATCCTTGCGTATCTGTGTCGTCggccctctccctgtcccagaATGCTTCATTCTGCGCCCCTGTGCTGAGGAGGCGTTGGGCAGTATGGACTGTGCGCTGGCCGGGACCCCCCCCCACGGATCTAGGCTGCCCCCCCAGGACGGGCACACACTGCACCTCTGCTGATGGGCGAGGACACTGACACCACCCGAACACTGAACCACAGCTTCCTCCGAGACCACAACTATGTGACTGAAGGGCTGCTCGTGGCTTTAGCCTGAAGAGCCCGCCccgcctcctcccctctcccggACTCCTCCCCCAGGATGTTGAACCCTATCCAGGTCCTGTGCTCCGACATCACTTCCCTCTCACTGGAGCCCGAGCCGTTTGCCTCTTACACTGAAGCTGATATCATCTCCACTGTTGAGTTCAACCACACTGGAGAGCTTCTGGCCACTGGGGACAAGGGGGGACGTGTGGTCATCTTCCAGAGGGAACCTgagggtaagACAGAGCCATTCTCCCAGGGGGAGTATAATGTCTACAACACCTTCCAGAGTCATGAGCCGGAGTTTGACTACCTGAAGAGTctggagatagaggagaagaTCAACAAGATACGATGGCTGCCACAGCAGAACGCCGcccacttcctcctctccaccaatGATAAGACCGTTAAGCTGTGGAAGGTGAGTGAGCGGGACAAGAGGCCTGAAGGCTACAACCTGAAGGATGAGGAGGGCAGGATGAAGAACCTCTCCACTGTCACCTCACTACAGGTGCCGGTGTTGAAGCCCATGGATCTGATGGTGGAGGTGAGTCCTCGGCGTGTCTTTGCCAACGCCCACACCTACCATGTCAACTCCATCTCCGTCAACTCTGACCATGAGACCTACATGTCAGCTGACGACCTGAGGATCAACCTCTGGCACCTGGGCATCACCAACCGCAGCTTCAACATCGTGGACATCAAGCCAGTGAACATGGAGGATCTGACAGAGGTGATAACAGCAGCAGAGTTCCACCCTCACCACTGTAACCTGTTGGTCTATAGCAGCAGTAAGGGAACTCTACGGCTCTGTGACATGAGAGAGGCCGCACTGTGTGACAAACACTCCAAACTGTTTGAGGAGCCGGAAGACCCCAGTAACCGCTCCTTCTTCTCTGAGATCATCTCGTCTGTGTCGGACGTGAAGTTCAGCCACAGTGGGCGCTACCTGCTGACCAGAGACTACCTCACTGCCAAGGTGTGGGACCTCAACATGGAGAACAAGCCCCTGGAGATATACCAGGTGCATGAATACCTCCGCAGCAAGCTTTGCTCCCTGTACGAGAACGACTGCATCTTCGACAAGTTTGAGTGTGTCTGGAACGGCTCAGACAGTGTGATCATGACTGGGGCCTACAACAACTTCTTCCGGATGTTTGACCGGAACACCAAACGCGACGTGACCCTGGAGGCGTCCAGGGAGAGCAGTAAGCCCCGGGCCGTGCTCAAGCCTCGCCGCGTCTGCCAGGGCGGGAAACGACGCAAGGATGACATCAGCGTAGACAGCCTGGACTTCACCAAGAAGATCCTGCACACGGCCTGGCACCCCACGGAGAACATCATCGCCATCGCTGCCACCAACAACCTGTACATCTTCCAGGACAAACTCAACCAGGAGATgcatggctgagagagagagagagcaggatgctggagacatacacacacacacacacacactgatgcacaCATTCATTCAGACAGTAAGGCAAGCAAGAACATataacatatgcacacacacacacactctctctctctctctctagatgacAGGGAGACGCTGTAAAGACACACTCCACAGTTCTCAGTGGATGGACCGGTCCACCCtaggtaccagacagggggagctGGATAACCCAATAAGAATGATGCTGGATTATGGTTTATGGAATTCTAAATCATGGATGTGTTGACTGTTGACCTCTGGATTGTGGctgatctgatggtgtttgttTTGCTATTGGTCATTTTTGCATTCTGAGGGGTTTGACCTCTTGACAGGAGGAGCTTTCACATGTGTCTGCCTTTTTCTGATCatctgcctcttcctctccttcctcttcctcctcactctGTTTCTGTACATGTctgtgctcagtcctctcctacAGTCTGGACTGATTCTTGACGTTAGTGTAAAAACCCTTTGTGGTTCCtggtggtaactagtggaaatgTTTGCGGAATGTTTGAAGTCTAATTctagtttttttttgttaaatcatgttacatgttacatgaTTTGAATGATCATTAATGATGATGGTAAAAGTGATGACAATGACAGTTAATGGTACACGAGACATTAGTCAGTAGGACATTGGGTTCCACAAGGCTGCCTGTCACCCCTAGGTGACATTTAATCCTGATGTTTCAGTTGACTGTGAAGACTGCTGGGGAACTTGGCTGTGTCGTGCTACTTTGCAATGAAACACAAGGAATGAAGCAAAAATCAAGTCCAGCAATCAAGCAAAAAAATATGCTGCAtgatggattttttttttgtttatataCATTTACTGGCTGCCTTTCTAACCATAAACAG
>XM_036970030.1
CTCTCTcgctaccactctctctccctcacacacacacgcgtgcgctTTCACACACATCCATACGCCAGAGCTGACACTGCAGCAGAAAAACAGCCTGGTAGCGAAAGAGAGGGACTCCATTGACTGTGAGAGAGGACTGTCTTCATGGAGGCTCTATCGAGGAGTACCTGACCAGAGGcaatgggctgtgtgtgtgtgtgttaatgtgttaggtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagcaccccaGCAAGAGAAGCAGCACTGCAGATACTGACTGAGTCCGGGGCTCAGCTTGGAGCATCGACCGAGAAACGAAGATCCATTGCTCtcaacctctgtgtgtgtgtgtgtcagtgaacgTGTATGTTTGTGTAAGAGCTGGTGTGTCATTCACTGCTCTGCCTGCGTATCCTTGCGTATCTGTGTCGTCggccctctccctgtcccagaATGCTTCATTCTGCGCCCCTGTGCTGAGGAGGCGTTGGGCAGTATGGACTGTGCGCTGGCCGGGACCCCCCCCCACGGATCTAGGCTGCCCCCCCAGGACGGGCACACACTGCACCTCTGCTGATGGGCGAGGACACTGACACCACCCGAACACTGAACCACAGCTTCCTCCGAGACCACAACTATGTGACTGAAGCTGATATCATCTCCACTGTTGAGTTCAACCACACTGGAGAGCTTCTGGCCACTGGGGACAAGGGGGGACGTGTGGTCATCTTCCAGAGGGAACCTgagggtaagACAGAGCCATTCTCCCAGGGGGAGTATAATGTCTACAACACCTTCCAGAGTCATGAGCCGGAGTTTGACTACCTGAAGAGTctggagatagaggagaagaTCAACAAGATACGATGGCTGCCACAGCAGAACGCCGcccacttcctcctctccaccaatGATAAGACCGTTAAGCTGTGGAAGGTGAGTGAGCGGGACAAGAGGCCTGAAGGCTACAACCTGAAGGATGAGGAGGGCAGGATGAAGAACCTCTCCACTGTCACCTCACTACAGGTGCCGGTGTTGAAGCCCATGGATCTGATGGTGGAGGTGAGTCCTCGGCGTGTCTTTGCCAACGCCCACACCTACCATGTCAACTCCATCTCCGTCAACTCTGACCATGAGACCTACATGTCAGCTGACGACCTGAGGATCAACCTCTGGCACCTGGGCATCACCAACCGCAGCTTCAACATCGTGGACATCAAGCCAGTGAACATGGAGGATCTGACAGAGGTGATAACAGCAGCAGAGTTCCACCCTCACCACTGTAACCTGTTGGTCTATAGCAGCAGTAAGGGAACTCTACGGCTCTGTGACATGAGAGAGGCCGCACTGTGTGACAAACACTCCAAACTGTTTGAGGAGCCGGAAGACCCCAGTAACCGCTCCTTCTTCTCTGAGATCATCTCGTCTGTGTCGGACGTGAAGTTCAGCCACAGTGGGCGCTACCTGCTGACCAGAGACTACCTCACTGCCAAGGTGTGGGACCTCAACATGGAGAACAAGCCCCTGGAGATATACCAGGTGCATGAATACCTCCGCAGCAAGCTTTGCTCCCTGTACGAGAACGACTGCATCTTCGACAAGTTTGAGTGTGTCTGGAACGGCTCAGACAGTGTGATCATGACTGGGGCCTACAACAACTTCTTCCGGATGTTTGACCGGAACACCAAACGCGACGTGACCCTGGAGGCGTCCAGGGAGAGCAGTAAGCCCCGGGCCGTGCTCAAGCCTCGCCGCGTCTGCCAGGGCGGGAAACGACGCAAGGATGACATCAGCGTAGACAGCCTGGACTTCACCAAGAAGATCCTGCACACGGCCTGGCACCCCACGGAGAACATCATCGCCATCGCTGCCACCAACAACCTGTACATCTTCCAGGACAAACTCAACCAGGAGATgcatggctgagagagagagagagcaggatgctggagacatacacacacacacacacacactgatgcacaCATTCATTCAGACAGTAAGGCAAGCAAGAACATataacatatgcacacacacacacactctctctctctctctctagatgacAGGGAGACGCTGTAAAGACACACTCCACAGTTCTCAGTGGATGGACCGGTCCACCCtaggtaccagacagggggagctGGATAACCCAATAAGAATGATGCTGGATTATGGTTTATGGAATTCTAAATCATGGATGTGTTGACTGTTGACCTCTGGATTGTGGctgatctgatggtgtttgttTTGCTATTGGTCATTTTTGCATTCTGAGGGGTTTGACCTCTTGACAGGAGGAGCTTTCACATGTGTCTGCCTTTTTCTGATCatctgcctcttcctctccttcctcttcctcctcactctGTTTCTGTACATGTctgtgctcagtcctctcctacAGTCTGGACTGATTCTTGACGTTAGTGTAAAAACCCTTTGTGGTTCCtggtggtaactagtggaaatgTTTGCGGAATGTTTGAAGTCTAATTctagtttttttttgttaaatcatgttacatgttacatgaTTTGAATGATCATTAATGATGATGGTAAAAGTGATGACAATGACAGTTAATGGTACACGAGACATTAGTCAGTAGGACATTGGGTTCCACAAGGCTGCCTGTCACCCCTAGGTGACATTTAATCCTGATGTTTCAGTTGACTGTGAAGACTGCTGGGGAACTTGGCTGTGTCGTGCTACTTTGCAATGAAACACAAGGAATGAAGCAAAAATCAAGTCCAGCAATCAAGCAAAAAAATATGCTGCAtgatggattttttttttgtttatataCATTTACTGGCTGCCTTTCTAACCATAAACAG

Function

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform-like isoform X2

GO: NA

KEGG:

id description
K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970028.1 False 3078 mRNA 0.52 10 25680193 25703747
XM_036970030.1 True 2928 mRNA 0.51 9 25680193 25703747

Neighbor

gene id symbol gene type direction distance location
LOC110504848 LOC106611897 coding upstream 9438 25665730 ~ 25670755 (+)
LOC110504847 LOC106611896 coding upstream 16193 25654381 ~ 25664000 (+)
LOC110504845 LOC106611890 coding upstream 26760 25642628 ~ 25653433 (+)
LOC110504843 LOC106611891 coding upstream 38136 25636347 ~ 25642057 (+)
LOC110504846 LOC106611893 coding upstream 49901 25627580 ~ 25630292 (+)
LOC118946024 LOC106611902 coding downstream 8 25703755 ~ 25709204 (+)
LOC118946029 NA coding downstream 37716 25741463 ~ 25744514 (+)
LOC110504413 LOC106611901 coding downstream 53142 25756889 ~ 25820010 (+)
LOC110504852 LOC106611898 coding downstream 116688 25820435 ~ 25838497 (+)
LOC110504854 LOC106611908 coding downstream 176876 25880623 ~ 25930604 (+)
si:dkey-74k8.4 aldob non-coding upstream 93465 25557578 ~ 25586728 (+)
G2265454 NA non-coding upstream 258874 25420334 ~ 25421319 (+)
G2265460 NA non-coding upstream 278196 25354526 ~ 25401997 (+)
G2265513 NA non-coding upstream 311373 25362932 ~ 25368820 (+)
G2265452 LOC106611878 non-coding upstream 358582 25320864 ~ 25321611 (+)
G2265698 NA non-coding downstream 120624 25824371 ~ 25824729 (+)
G2265700 NA non-coding downstream 132174 25835921 ~ 25836374 (+)
G2265731 NA non-coding downstream 247905 25951652 ~ 25951961 (+)
G2265743 NA non-coding downstream 274138 25977885 ~ 25978096 (+)
G2265625 NA other upstream 53337 25625145 ~ 25626856 (+)
G2265425 LOC106611874 other upstream 435864 25215651 ~ 25244329 (+)
G2264345 NA other upstream 1489158 24190750 ~ 24191035 (+)
G2264344 NA other upstream 1489841 24190073 ~ 24190352 (+)
G2265744 NA other downstream 274388 25978135 ~ 25978638 (+)
LOC118946064 NA other downstream 585978 26289725 ~ 26292004 (+)
LOC110504416 diaph1 other downstream 658245 26298775 ~ 26483992 (+)
G2266668 LOC106611853 other downstream 887519 26588592 ~ 26620948 (+)

Expression


Co-expression Network