LOC118946024 (LOC106611902)


Basic Information

Item Value
gene id LOC118946024
gene name LOC106611902
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25703755 ~ 25709204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970031.1
TATTACATCTATACATTTTTCTCTCCTTTTGTGGCATGTAACGCAGCtgaatagaacacacacactcctcaccccAGACAGGATTTGCGTGTTACAATTCATCTGAAGTTGAGATTATCCTCCCACTACCCCTAGTACCCCCTAAAGACAGTATGTTGTAGTCCTGAACCCGTGCCCCAGACATCGTGGACATCAAGCCAGTGAACATGGAGGATCTGACAGAGGTGATAACAGCAGCAGAGTTCCACCCTCACCACTGTAACCTGTTGGTCTATAGCAGCAGTAAGGGAACTCTACGGCTCTGTGACATGAGAGAGGCCGCACTGTGTGACAAACACTCCAAACTGTTTGAGGAGCCGGAAGACCCCAGTAACCGCTCCTTCTTCTCTGAGATCATCTCGTCTGTGTCGGACGTGAAGTTCAGCCACAGTGGGCGCTACCTGCTGACCAGAGACTACCTCACTGCCAAGGTGTGGGACCTCAACATGGAGAACAAGCCCCTGGAGATATACCAGGTGCATGAATACCTCCGCAGCAAGCTTTGCTCCCTGTACGAGAACGACTGCATCTTCGACAAGTTTGAGTGTGTCTGGAACGGCTCAGACAGTGTGATCATGACTGGGGCCTACAACAACTTCTTCCGGATGTTTGACCGGAACACCAAACGCGACGTGACCCTGGAGGCGTCCAGGGAGAGCAGTAAGCCCCGGGCCGTGCTCAAGCCTCGCCGCGTCTGCCAGGGCGGGAAACGACGCAAGGATGACATCAGCGTAGACAGCCTGGACTTCACCAAGAAGATCCTGCACACGGCCTGGCACCCCACGGAGAACATCATCGCCATCGCTGCCACCAACAACCTGTACATCTTCCAGGACAAACTCAACCAGGAGATgcatggctgagagagagagagagcaggatgctggagacatacacacacacacacacacactgatgcacaCATTCATTCAGACAGTAAGGCAAGCAAGAACATataacatatgcacacacacacacactctctctctctctctctagatgacAGGGAGACGCTGTAAAGACACACTCCACAGTTCTCAGTGGATGGACCGGTCCACCCtaggtaccagacagggggagctGGATAACCCAATAAGAATGATGCTGGATTATGGTTTATGGAATTCTAAATCATGGATGTGTTGACTGTTGACCTCTGGATTGTGGctgatctgatggtgtttgttTTGCTATTGGTCATTTTTGCATTCTGAGGGGTTTGACCTCTTGACAGGAGGAGCTTTCACATGTGTCTGCCTTTTTCTGATCatctgcctcttcctctccttcctcttcctcctcactctGTTTCTGTACATGTctgtgctcagtcctctcctacAGTCTGGACTGATTCTTGACGTTAGTGTAAAAACCCTTTGTGGTTCCtggtggtaactagtggaaatgTTTGCGGAATGTTTGAAGTCTAATTctagtttttttttgttaaatcatgttacatgttacatgaTTTGAATGATCATTAATGATGATGGTAAAAGTGATGACAATGACAGTTAATGGTACACGAGACATTAGTCAGTAGGACATTGGGTTCCACAAGGCTGCCTGTCACCCCTAGGTGACATTTAATCCTGATGTTTCAGTTGACTGTGAAGACTGCTGGGGAACTTGGCTGTGTCGTGCTACTTTGCAATGAAACACAAGGAATGAAGCAAAAATCAAGTCCAGCAATCAAGCAAAAAAATATGCTGCAtgatggattttttttttgtttatataCATTTACTGGCTGCCTTTCTAACCATAAACAGGCTGTAAAAAGGCTTCTGGAGCTCTGCCTCTACACAGCACTAGTTACCATAGACAACAACAAAGAGCTCTCCTTTTGTTTGTGTTTACCGGACACAAAAAGCATGTTTACCAGTGTTCACTTTTACGGTGTACATTTGAAATGAAGCCCAAATAATACATAGTTTTACATGAAGATACTGAACCAGAGGTATGGGGAATGTTTTATCAACGTTGTAATCTAAACCTTTAAAGGAACGTTTTATCAGGGTTGTAATCTAAACCTTTAAAGGAACGTTTTATCAGGGTTGTAATCTAAACATTTAAAGGAATGTTTTATCAACGTTGTAATCTAAACCTTTAAAGGAATGTTTTATCAACGTTGTAATCTAAACCTTTAAAGGAACGTTTTATCAGGGTTGTAATCTAAACATTTAAAGGAATGTTTTATCAACGTTGTAATCTAAACCTTTAAAGGAATGTTTTATCAGGGTTGTAATCTAAACCTTTAAAGGAATGTTTTATCAGGGTTGTAATCTAAACCTTTAAAGGGCCTGAATGGTATCTGCTGTAAATTCAACTATTTTTGACATTTCTAGGTTTGTTGTTTCGGATAAAGAACCAAGAGTGCAGAGCCGATCATCTCTGATGATGGTGTTCATGGCAACAAGAGAGAGATGATTAAACTCTTCCCTCTTAGCCTTTCAACAAATTCAGAATTTTTTTGAGAAGTTATTGTTAACTTGTGTATTTTTTTAACATCTGTCACTTGTGTTTGATTTCATGTCCTGCTGCCCTGGCATTGATTCACATATTTTGTGTTCATGTATTTTCAACGGGAAAAAAATCTCATGAACAATTACGAATATgttaatgttattttttttctgaATAAAGATTTCAACAATATTGC

Function

NR:

description
serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970031.1 True 2707 mRNA 0.43 5 25703755 25709204

Neighbor

gene id symbol gene type direction distance location
LOC110504850 LOC106611902 coding upstream 8 25680193 ~ 25703747 (+)
LOC110504848 LOC106611897 coding upstream 33000 25665730 ~ 25670755 (+)
LOC110504847 LOC106611896 coding upstream 39755 25654381 ~ 25664000 (+)
LOC110504845 LOC106611890 coding upstream 50322 25642628 ~ 25653433 (+)
LOC110504843 LOC106611891 coding upstream 61698 25636347 ~ 25642057 (+)
LOC118946029 NA coding downstream 32259 25741463 ~ 25744514 (+)
LOC110504413 LOC106611901 coding downstream 47685 25756889 ~ 25820010 (+)
LOC110504852 LOC106611898 coding downstream 111231 25820435 ~ 25838497 (+)
LOC110504854 LOC106611908 coding downstream 171419 25880623 ~ 25930604 (+)
LOC110504415 dock2 coding downstream 271718 25980922 ~ 26117728 (+)
si:dkey-74k8.4 aldob non-coding upstream 117027 25557578 ~ 25586728 (+)
G2265454 NA non-coding upstream 282436 25420334 ~ 25421319 (+)
G2265460 NA non-coding upstream 301758 25354526 ~ 25401997 (+)
G2265513 NA non-coding upstream 334935 25362932 ~ 25368820 (+)
G2265452 LOC106611878 non-coding upstream 382144 25320864 ~ 25321611 (+)
G2265698 NA non-coding downstream 115167 25824371 ~ 25824729 (+)
G2265700 NA non-coding downstream 126717 25835921 ~ 25836374 (+)
G2265731 NA non-coding downstream 242448 25951652 ~ 25951961 (+)
G2265743 NA non-coding downstream 268681 25977885 ~ 25978096 (+)
G2265625 NA other upstream 76899 25625145 ~ 25626856 (+)
G2265425 LOC106611874 other upstream 459426 25215651 ~ 25244329 (+)
G2264345 NA other upstream 1512720 24190750 ~ 24191035 (+)
G2264344 NA other upstream 1513403 24190073 ~ 24190352 (+)
G2265744 NA other downstream 268931 25978135 ~ 25978638 (+)
LOC118946064 NA other downstream 580521 26289725 ~ 26292004 (+)
LOC110504416 diaph1 other downstream 652788 26298775 ~ 26483992 (+)
G2266668 LOC106611853 other downstream 882062 26588592 ~ 26620948 (+)

Expression


Co-expression Network