LOC110504908


Basic Information

Item Value
gene id LOC110504908
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27893486 ~ 27896473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110504908
GAAGGAGATAGATCCGGAGACATTCCATCCAACTCCACTCCTGGAGAGTCTGGACTTCTCCCACAACCGTCTCCAGAATCTCACTGAACAACGGTACCTGCTGTTCATACAGAACCTGAGAGGTCTAGATCTGACCTCTAACCTGTTCCACACCATTAACCTGGGGGCAGAGTTCTGTAGCCTGGGAAAGCTAGAGTCTGGGGCTCGGAGCAAACATCAACATCCCTGACGTACACCTGCAAACTTTGACCCTTCGTCTGGAGAACTTCACAGCCTATGAGAGTGGCAGCCTGGGTGACATCTAGGCAGAGAAGGTCCTCATGTCCAACGAGGTCGAGCTTATGGGTATGAACCCGAAGGGCGACCACAGTTACCTGGTGAAACTTTTGAAGGGGAGAGGGGCTGACAACACCTTACATCTTCACCTAGCCAATATGGTCATCACTTGGGAGCACTTGACCAACACCGTAAACGCTGTGTTCCAATCCCCCATCGCCCACCTGAGCACTTCAGACATGGCTATCCACATCCGTCTTTTAGTGACACCCCACGAAGAGACACATTCGAGAGGGGGTGGTTACCTTTTTCTTCTCCCTGGAAGCCCTCTGTAATTTTTTCATCAACGTGCCTGTGGAGCACCTGCCGATGACTGAGACGTCCATCATACACATGACCTGCCCCAGGTTGCCCAGCGGGATACTGCAGCTAGACTTCTCAGACTGCACCCTGACTGATACGGTGTCCTCAAGAGTAGAACTGCAAATCGCTTTGGAGTGTACAACCCTGAATAAAAATTGGACATCCTGGTGCTAAGAGGGAACAACCTCAAAAACCTTCAAATCCTGAGCAAGTGTTTAGCACACGAGCTCTCTGCGTCACCTGGACCTCAGTCTCAACTCGTTGGTTTACAGCGGGCCAGGAATGCCACAGGCTGTACACCTGAACCTATCCTCCAATGGGCTGAGCCAATTGGTATTAGCTGCTTGCCGAACAGTACCCCCACCCTGGATCTCCTGAACAACCAGATCTCCAATGTACCAGAGGCCCTGCTGGCCCTAGACTCTCTCCTTGCTCTGTACCTGAGTACCAATCGGCTGAGGAATCTCCCGGTGTGCGCTGGATTCCCACACCTTAAGTATCTCATGCTCATGGAGAACTCCCTCCATGCCCCGTCTTTGACCGGTCTGGGGGCCTGCCCTGTTCTACGGGTTCTAAACGCCAGCAGAAACCCCTTCACCCATTCCCTGAGAGGATTCAGGGATCTGGGTACTTTTGGGACTGGGCTGGGCAGCGGACACACAGGAATCCAATTTCTCCACTGGCCCACGAGCCTACCACTGCAGCTACCTTGAAGTCTGAGGAACTCCACACACCAGAGGGCTTCCAGATCCAGGAGATATCCTGCAACGTTGGCCTGCTGGCAACGGCCATCTGGTGCCCAGCGGTCACGGTTATCATTGTTATGGCGACTCTGTGCAACCTCCTGGACGTTCCGTGGTACCTGAGTATGATCTGGCAGTGGACCCAGGCCAAGCACCATTCCAGGACCCAGCAGGTCCGGCCCCAGGACCTGGAGGGGTGTTGTTCCACTCCTTCATGTCCTACAGCCAGCATAATGCAGACGGGGTCaagggcagtggtgtaaagtacttacAACTCCGGCCAAGGGGGCTCCACATCTGTCGCCATGAGAGGGACTTCGTCCCAGGGAAGACGATCGTGGAGAACATCATCCAATGTGTGGAGAGGAGCCGGCGATGTGTTCATCCTCTCTGGACACTTCGTCCGGAGCGAGTGGTGCTACTACGAGCTGTACTTTGCCAGCCATCTGCGGCTGTCCTGTGGGTTTGACAGTGATATCCTGGTGCTACTGGAGCCTCTGACTCAGTGCATGATCCCTTCCAAGTACTACCAACGAAGGCTATGATGGGCAGGCACACCTACCTGGAGTGGCCCCAGGACAGGGGCAAGCACAGGCTGTTCTGGGCCAACCTCAGGGCTGCACTGCAGTGCTTCACAAAATGA

Function

NR:

description
toll-like receptor 1

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110504908 True 2025 mRNA 0.54 3 27893486 27896473

Neighbor

gene id symbol gene type direction distance location
trnap-ugg-72 NA coding upstream 1014 27892401 ~ 27892472 (+)
LOC110504904 LOC106611814 coding upstream 119034 27711752 ~ 27774452 (+)
LOC110504902 k0141 coding upstream 182240 27699689 ~ 27711246 (+)
LOC110504898 LOC106611819 coding upstream 719366 27125620 ~ 27174120 (+)
LOC110504416 diaph1 coding upstream 1409494 26298775 ~ 26483992 (+)
LOC110504909 LOC106611695 coding downstream 6224 27902697 ~ 27908430 (+)
LOC110504911 NA coding downstream 56639 27953112 ~ 27954152 (+)
LOC110504912 LOC106611698 coding downstream 62265 27958738 ~ 27961819 (+)
LOC110504914 LOC106611700 coding downstream 91479 27987952 ~ 28010322 (+)
LOC118946038 NA coding downstream 157915 28054388 ~ 28056425 (+)
G2267883 NA non-coding upstream 67859 27818248 ~ 27825627 (+)
G2267872 NA non-coding upstream 98040 27793509 ~ 27795446 (+)
G2267870 NA non-coding upstream 100816 27786214 ~ 27792670 (+)
G2267868 NA non-coding upstream 112329 27780925 ~ 27781157 (+)
G2267935 ints10 non-coding downstream 2998 27899471 ~ 27899830 (+)
G2267943 NA non-coding downstream 20742 27917215 ~ 27923755 (+)
G2267946 NA non-coding downstream 31052 27927525 ~ 27928014 (+)
G2266826 NA other upstream 957597 26934720 ~ 26935889 (+)
G2266668 LOC106611853 other upstream 1272538 26588592 ~ 26620948 (+)
LOC118946064 NA other upstream 1601482 26289725 ~ 26292004 (+)
G2265744 NA other upstream 1914848 25978135 ~ 25978638 (+)
G2268340 NA other downstream 870404 28766877 ~ 28767729 (+)
G2268400 LOC106611722 other downstream 1000282 28896755 ~ 28898079 (+)
G2271027 NA other downstream 3280417 31176890 ~ 31181107 (+)
G2272912 LOC106611792 other downstream 4966963 32863436 ~ 32866226 (+)
LOC110505056 LOC105028844 other downstream 5519617 33328263 ~ 33421963 (+)

Expression

LOC110504908 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 0.2.
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LOC110504908 Expression in each Bioproject

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LOC110504908 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
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Co-expression Network