LOC110504911


Basic Information

Item Value
gene id LOC110504911
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27953112 ~ 27954152 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583783.2
GTAATTTCCGGTTTAAACAGTCACATTTCCGCCATCAAACACGCCGGTACTGAGAATCAAACCAAAGAGCAAGCGTAACACAAATTTGCAGAGAAATCGCAGCCATAAAATCACAACCAGCGCAGGGGTTGGGTGTTAAACCTTCACAGACCACTGAGAGATGTTCAAACTCGAGGGGTTAGGGCCGAAAATGGACCCGGAGGCGATGAAGAAAAAGATGCGACAGGACGTCATCTCGTCCGTGCGCAATTTCCTAATCTATATTGCCCTTCTCAGAGCCActCCATATATTTTGAAGAAGTTGGACAGCATTTGAGACCATCTATCTCTACAGTATTCCCACACTCCATTTACTGCATCAAGCACAATGGACATAGCGATGACAGGGGAACAAAGGGACGAGTGGCGAGCTAAACACCATCATATGGATCCTATATGGAATACTTATTTATAGGCTTCAATGAAGACAGTGCGTTGTGTCCCACATAGCACTTGAACACTAAGTAGTTGTCAGTTATAGTTTTCAAGATGTCCTCTGTTTTTGTTTACAGTTAGTGCTCAGTAACAGAAAAACATCTGATTGCATTTTGGTTTTGAGTGATACTGTACCTCCATTTGCAATGGTCCCTATCAATAAATGAGAGTGTTGTAATTGAAACGTTTGAATTTTGTTGGTCATGCGGATCACCTGCAATAAAAGGAAGACAT
>TU2594442
TCAAACACGCCGGTACTGAGAATCAAACCAAAGAGCAAGCGTAACACAAATTTGCAGAGAAATCGCAGCCATAAAATCACAACCAGCGCAGGGGTTGGGTGTTAAACCTTCACAGACCACTGAGAGATGTTCAAACTCGAGGGGTTAGGGCCGAAAATGGACCCGGAGGCGATGAAGAAAAAGATGCGACAGGACGTCATCTCGTCCGTGCGCAATTTCCTAATCTATATTGCCCTTCTCAGAGCCActCCATATATTTTGAAGAAGTTGGACAGCATTTGAGACCATCTATCTCTACAGTATTCCCACACTCCATTTACTGCATCAAGCACAATGGACATAGCGATGACAGGGGAACAAAGGGACGAGTGGCGAGCTAAACACCATCATATGGATCCTATATGGAATACTTATTTATAGGCTTCAATGAAGACAGTGCGTTGTGTCCCACATAGCACTTGAACACTAAGTAGTTGTCAGTTATAGTTTTCAAGATGTCCTCTGTTTTTGTTTACAGTTAGTGCTCAGTAACAGAAAAACATCTGATTGCATTTTGGTTTTGAGTGATACTGTACCTCCATTTGCAATGGTCCCTATCAATAAATGAGAGTGTTGTAATTGAAACGTTTGAATTTTGTTGGTCATGCGGATCACCTGCAATAAAAGGAAGACATGTTT

Function

NR:

description
mitochondrial import receptor subunit TOM5 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583783.2 False 708 mRNA 0.42 2 27953112 27954148
TU2594442 True 678 lncRNA 0.42 2 27953146 27954152

Neighbor

gene id symbol gene type direction distance location
LOC110504909 LOC106611695 coding upstream 44682 27902697 ~ 27908430 (+)
LOC110504908 NA coding upstream 56639 27893486 ~ 27896473 (+)
trnap-ugg-72 NA coding upstream 60640 27892401 ~ 27892472 (+)
LOC110504904 LOC106611814 coding upstream 178660 27711752 ~ 27774452 (+)
LOC110504902 k0141 coding upstream 241866 27699689 ~ 27711246 (+)
LOC110504912 LOC106611698 coding downstream 4590 27958738 ~ 27961819 (+)
LOC110504914 LOC106611700 coding downstream 33804 27987952 ~ 28010322 (+)
LOC118946038 NA coding downstream 100240 28054388 ~ 28056425 (+)
LOC110504919 LOC106611705 coding downstream 103264 28057412 ~ 28065727 (+)
trmt12 LOC106611794 coding downstream 201273 28155421 ~ 28163913 (+)
G2267946 NA non-coding upstream 25098 27927525 ~ 27928014 (+)
G2267943 NA non-coding upstream 29357 27917215 ~ 27923755 (+)
G2267935 ints10 non-coding upstream 53282 27899471 ~ 27899830 (+)
G2267883 NA non-coding upstream 127485 27818248 ~ 27825627 (+)
G2267955 NA non-coding downstream 462 27954610 ~ 27954885 (+)
G2267962 NA non-coding downstream 1902 27956050 ~ 27956434 (+)
G2267924 NA non-coding downstream 7754 27961902 ~ 27963378 (+)
G2267925 NA non-coding downstream 59978 28014126 ~ 28014875 (+)
G2266826 NA other upstream 1017223 26934720 ~ 26935889 (+)
G2266668 LOC106611853 other upstream 1332164 26588592 ~ 26620948 (+)
LOC110504416 diaph1 other upstream 1580629 26298775 ~ 26483992 (+)
LOC118946064 NA other upstream 1661108 26289725 ~ 26292004 (+)
G2265744 NA other upstream 1974474 25978135 ~ 25978638 (+)
G2268340 NA other downstream 812729 28766877 ~ 28767729 (+)
G2268400 LOC106611722 other downstream 942607 28896755 ~ 28898079 (+)
G2271027 NA other downstream 3222742 31176890 ~ 31181107 (+)
G2272912 LOC106611792 other downstream 4909288 32863436 ~ 32866226 (+)
LOC110505056 LOC105028844 other downstream 5461942 33328263 ~ 33421963 (+)

Expression


Co-expression Network