LOC110504914 (LOC106611700)


Basic Information

Item Value
gene id LOC110504914
gene name LOC106611700
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27987952 ~ 28010322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969630.1
CTTGTAAGGACATGTTTACTTTTCCGTGCCGATATGTTTCTTCCTGGTTCCATTAAATAGTAAACTCTCCTTTAATTTGGATATCAGAGTGGAACAACTTTTGCCAAAGCGAATGATTAAAAATAGCTGTCTATCGAAGCTGACTGCGTGTGAGGGAGAAGAGTCCAAATACAAAATAAGTAGGCATTTTGTCGGAAGCAGATTTGTGATTACATCCTCGCCACCCACCACGCCCACCCTCCCACATATttgaggacccccccccccccctgcccgcGTCTCGCAAGGCGCTTGTGAAGAACCTGCGAACCGAGCCGTGTTTTTTCTATGGCTCTGCTGACCCTGCACCGTCCCCCGTCCATCTCCACGGCTCCGGATGAAAGCATTCCAAGAAGAGGGAGACTTCAGAAAAGGGAGAGCTTTGCTCTGGTCAAGGGGGCCGTCCTTCTcttggaaggagagagggaggagcctCATGAAGAGACATCACCCAATCACTTTCCTTCACCCCTGAAGCTGGGGGGCGGAGCTTCagacacacagcacagacatcTGCATGCCATGGTGTCATTACTGAGACCAGAGGACACTATCAAACTGGCAGTGAGGTTGGAGTCAGTGAGTCCAGTCAGAGTGAGGTATCTGATCGTGGTCTCCACCCTCGGTAACAAACAGGAGAGCATTCTCCTGGGCATGGACTTCCCTGACACAGACAGtgatcAGTGTACTATCGGTATGGTTGTGCCCATATGGAGTGCCACACAAGTGTACCTGGACGGAGATGGTGGGTTCAGTGTCACGTCAGCAGAAGAGACAAGAATCTTCAAGCCTGTTTCCATCCAGACTATGTGGTCAGTGCTGCAGGCGCTGCATGGCTGCTGTGAGCGGGCGGTGAAGGGTGCAGTGATTCCAGGCTGTGGGCTGGACTGGGCCCAACACTACTATGGGCATGTGGAGTCTACCCGCCTCTGTCTAAACGAGTGGGGCGCTATGACAGGCCTGGAGTCAATCAGGAGGGACAGCGCCGGACAGAGCTCGACGGAGAGGGTGTCTGTGGAGAGGCAGATCAAAGAGGAACTCCGAAACATCATGAGAACAGAGGACCTGGAGAACATCACCTCCAAACAGGTCCGCAGTGCCCTGGAGGCCAGGATAGGCATGGATATGAAGAATTACAAGGAATACATCGACAATGAAATGATGGTCACCATGGCGCAGATGGACAAGCCCTCCAAAATATTTGACTATTTGTTCCTGggGTCTGAGTGGAATGCTGCCAACTTTGAGGAGCTACAGAAAAACAATGTGGGATACATCCTGAACATTACGCGGGAGATCGATAACTTCTTCCCAGAGTCCTTCAGCTACATGAACATTAGGGTGTACGACGTGGAGGCTACGGACCTGCTGTCTCACTGGAAAGACACATACACCTTCATCAACACAGCCAGACAGAGTGGCAAGGCGGTGCTGGTGCATTGTAAGATGGGCGTGTCTCGCTCTGGGTCCACAGTGGTGGCCTATGCCATGAAGCAGCAGCGCTGGCCCCTTGAGGTGGCTCTGTCCTACGTCAGGGACCGCAGGCCCATCGTCCAGCCCAACGTCGGCTTCATGAAGCAACTCCACACCTACAGTGGCATCCTTAATGCCAGTCAGCAGCGCCACAGCGCTCTCTGGAGGCGGATGTCacgagagaagagaaagaggtctGCTGCTTCACACAgcaacgaagaagaagaagaagaagaggaggagagtgacgaggaggatgaagaagagaCGGAGAGTCCAGATGAAGTTGATGAGGCAGATAAAGAGGTATTTGAGGAGCCTGCCCCCAAGGTTGAGACTGACGCAGAAGCTTCACTCACGGAACTGGCCTCCCCACTCACGGAACTGGCCTCCCCACTCACGGAACTGGCCTCCCCACTCACGGAACTGGCCTCCCCACTCACGAAACCGGCCTCCCCACTCACGGAACCGGCCTCCCCACTCACGGAACCGGCCTCCCCACTCACGGAACCGGCCTCCCCACTCACGGAACCGGCCTCCCCACTCACGGAACCGGCCTCCCCACTCACGGAACCGGCCTCCCCACTCACGGAACCGGCCTCCCCACTCACGGAACCGGCCTCCCCACTGGCCTCCCCACTCACGGAACCGGCCTCCCCACTGGCCTCCCCACTCACGGAACCGGCCTCCCCACTCACGGAACCGGCCTCCCCACTGGCCTCCCCACTCACGGAACTGGCCTCCCCACTCACGGAACTGGCCTCCCCACTCACGGAACTGGCCTCCCCACTCACGGAACCGGCCGCCCCACCCGCCCCACCCACGGAACCGGCCGCCCCACCCACGGAACCGTCTGCAGCTAATCCCCTTATCACTGTACACGACAGTGACAAGGCGTCCTCTCAGAGCCCCAGTCGCAGTGGCAGGATGAACCTCTTTTCTCTCATGCAGTCCATCAACGAACTGGACGATGAGGATCTAAGGAATGAACAGATTGCCAACAGTCACCGGCGGTCTCCAGGGCAGCGGAGGCGGAGTCATGGACGGAAGGGCCTCATGCATCAGAGGGCCCATGTGGACGGTTCACCTGAGCCAAGCAGCCTATCAGGTCCCAGAAAATGTGAAGGGGCGGGGCCAAGTAAACCTGAGTCCAGGGAAGGAGATACCAAGACGATGGAAGGACGGTagagtgagagaaggggagaatggatggagaaagagaagccTAGAGTAGACACTAATGAGAAAGAGATGAAATGTTCTGCCTTCTTTCAAGCTATAAACATGAAAGTATCACCCAAAGATATTTATATACATCATGTTActtaagccttgttcacactgcaggccttaaaAGCTAAAATCAGTATTTTTCAATTCTgttttggaatactgactgtccaaacagcaagttacaagtaACCAAATCAGATTTGtttgttcagacagcagtcatttgcttACATGGCTACACTAGTTGTCATAGCAATGATGGGTGTGTGCGAgcagtggtgtaggctgattcactaatttgtttgtaaacaattaacaagcttgttagctaccacattcttgtcaaactgtcagtggctagcaagcaacaagatatgccAAATAAGTCTAAAAACCATTTGCAGGCAAATAAATCCgatttgaccgttcagacacaAGTTGCATGGCCAGGAATCCGATTAGTACCTGATTTCAACCCACCTACGAAGGTGTtttgaaatgtggcttgaaatatGTTTGTCTGTTCATACTGCAGGAAAAAGAACAGATTTGAATCGTATATGCATTTCTTTTAGTTacttcaaactgccaatgtgaacaaggctttagacTACCAACTAGCATAGCGTCACACacggagtatacaaaacattcatcggggcatggacactacaagctgtcaagcgttccacagggatgctggcaaaTGTTGACTTCAATCCTCgccacagctgtgtcaagttgagtgtgaaaaacccagcagcattgcagttcttgacacactcaaactggtgcacaTTACACCGTTCAAATGCACTCAGATATTTTGTTTTGCTGATTTCACccgctgaatggcacacacacacacaatcctcgtctcaaagcttaaaaacccttctttaaccagtctcctccccatcatctacactgatttgaagtggtgacatcaataagggatcataactttctcctggattcacctagtcagtctaccatggaaagaggtgttcctaatgttttgtgcactcagtgtataattTGATTAATTGTCATTCCTTTTGCACAATATTTCATTTTAGGTTCTTTTAATGTATCACAAACTGTTCCCCAACACATTTACTCCATTGGTAGTGATGGCTCACTTTTTTTTATGTCACTGCAGTATTACGACACCAATAATTATGTGTATGACCAAAGCTTAGTATTTCTGGTTAGCCTTACCTACTGTCACTGAAGTTGGAATGTATGTACATTACCATACTGCATGTGTAGTGTGCCCTCCTTTTCTCCTCATGACCTCTATGCAATAATGAATTTGTCTTCTCTGAATTTGAGGCTGCCAGTTCAGGTTGTGTATTTTAAGTGCCCTTATTTTATGGGTTTTCTTTCTTACAAACGCACATACAAGCTAGATCTTTTTAGAGTTTATCAAAATGGCATGCTGTCTCAATGATCCAAAACTTGAATTTTCTCACTGATGTTTCAAAATAGTAATATTGAGTGACTGTTTTAAGCTGTGTTATTATTCTGGACCAATGCATGACCAATCCAAGGGCACCAGACTGTTTGCCAATTGTGTTCCTCTGTGCCAATGAACTTTCTGTCCTTTGAGTTTTAGGGCCCAATTCAATCAGATCTGCTTCAGCAGACAGCCGCGTAGCTAATGTTTTGACGGTGTtggaggtggaactgcgttagagctgtcaaattcaCAAGTGGCTCCCAGCATGCAGTCGCGTTAAGAAAAAACCCATGCCGACTTGTTTACAagttggaacactggaatgtgagatgtaatccaCACCTCCATTATGCTGATTAGGAATCCTCATTTATTTTGTTAAATGATTTTTCAATTTGAGCGTAATTATTTCTCTATAGCCTTCACGTTGTCATTCTGAACTTCCTCCGTGACTGCAGCGGATTTTGTTACAATGATCGAGCAGCTGCTCACTGGTTTGACAGTTCCACTCACCTGCGACACCACCAAAACATCCGCTAAGCGGTTTCCTGCTGTCGCCGGTTAACGCTTGAACTGATTGAATGTAAAGCCTTAATCTAAAGACAACAGATTTGAGGATCATTAGAAAACTCGTACCctctttttttaattttttatcttGGGTGTTAAATCCCTTTAAGTTATTGGAGatgttttatttctttttttaaatatttcacTGTCGTTCCACAAATAGCCTTGCTGTAGGAGTGCCTTGGACGTGGGACCCAAATAACCAAGTTATTTCCCGAATACACAGACCCTGATTTAAAGTATTTATAATATCTACGGTATATTGCTTTTTCTCCGAGCTGGTGGCTTTTTTTCATATTGTTTTAACGGTTTGTCTTCATGACCAGTGTGCATGTTAGCATGATTTTGTTCAGGTTACGTTTTTTGTGTCTTTTGGACTTTTGAGGTAGTTTTGGCATTATGGTGAAAGTTTCTGAACTTTCCTCAGTTAAACTGAATGGTTcttcattgatccatttttttttttttaagtcttcAGCTGGCTGTTGTTTTTATATTCATAATTGAAACAAGTTTCCACCACATCATCCCATTGACACTGCCTGAGCCGACCTCTGCTGTACTGCAATCAAATCCATCAATGACCTGTATCTGTCATTGTTCTGGATAAGTGTTATCTCCCCCACTGTTTTCAGCACATTTGTTTACAGCTATACTGTATGAGTGAATAAATGTTTCAGAGTAACC
>TU2594407
GCAGCTAATCCCCTTATCACTGTACACGACAGTGACAAGGCGTCCTCTCAGAGCCCCAGTCGCAGTGGCAGGATGAACCTCTTTTCTCTCATGCAGTCCATCAACGAACTGGACGATGAGGATCTAAGGAATGAACAGATTGCCAACAGTCACCGGCGGTCTCCAGGGCAGCGGAGGCGGAGTCATGGACGGAAGGGCCTCATGCATCAGAGGGCCCATGTGGACGGTTCACCTGAGCCAAGCAGCCTATCAGGTCCCAGAAAATGTGAAGGGGCGGGGCCAAGTAAACCTGAGTCCAGGGAAGGAGATACCAAGACGATGGAAGGACGGTagagtgagagaaggggagaatggatggagaaagagaagccTAGAGTAGACACTAATGAGAAAGAGATGAAATGTTCTGCCTTCTTTCAAGCTATAAACATGAAAGTATCACCCAAAGATATTTATATACATCATGTTActtaagccttgttcacactgcaggccttaaaAGCTAAAATCAGTATTTTTCAATTCTgttttggaatactgactgtccaaacagcaagttcagacagcagtcatttgcttACATGGCTACACTAGTTGTCATAGCAATGATGGGTGTGTGCGAgcagtggtgtaggctgattcactaatttgtttgtaaacaattaacaagcttgttagctaccacattcttgtcaaactgtcagtggctagcaagcaacaagatatgccAAATAAGTCTAAAAACCATTTGCAGGCAAATAAATCCgatttgaccgttcagacacaAGTTGCATGGCCAGGAATCCGATTAGTACCTGATTTCAACCCACCTACGAAGGTGTtttgaaatgtggcttgaaatatGTTTGTCTGTTCATACTGCAGGAAAAAGAACAGATTTGAATCGTATATGCATTTCTTTTAGTTacttcaaactgccaatgtgaacaaggctttagacTACCAACTAGCATAGCGTCACACacggagtatacaaaacattcatcggggcatggacactacaagctgtcaagcgttccacagggatgctggcaaaTGTTGACTTCAATCCTCgccacagctgtgtcaagttgagtgtgaaaaacccagcagcattgcagttcttgacacactcaaactggtgcacaTTACACCGTTCAAATGCACTCAGATATTTTGTTTTGCTGATTTCACccgctgaatggcacacacacacacaatcctcgtctcaaagcttaaaaacccttctttaaccagtctcctccccatcatctacactgatttgaagtggtgacatcaataagggatcataactttctcctggattcacctagtcagtctaccatggaaagaggtgttcctaatgttttgtgcactcagtgtataattTGATTAATTGTCATTCCTTTTGCACAATATTTCATTTTAGGTTCTTTTAATGTATCACAAACTGTTCCCCAACACATTTACTCCATTGGTAGTGATGGCTCACTTTTTTTTATGTCACTGCAGTATTACGACACCAATAATTATGTGTATGACCAAAGCTTAGTATTTCTGGTTAGCCTTACCTACTGTCACTGAAGTTGGAATGTATGTACATTACCATACTGCATGTGTAGTGTGCCCTCCTTTTCTCCTCATGACCTCTATGCAATAATGAATTTGTCTTCTCTGAATTTGAGGCTGCCAGTTCAGGTTGTGTATTTTAAGTGCCCTTATTTTATGGGTTTTCTTTCTTACAAACGCACATACAAGCTAGATCTTTTTAGAGTTTATCAAAATGGCATGCTGTCTCAATGATCCAAAACTTGAATTTTCTCACTGATGTTTCAAAATAGTAATATTGAGTGACTGTTTTAAGCTGTGTTATTATTCTGGACCAATGCATGACCAATCCAAGGGCACCAGACTGTTTGCCAATTGTGTTCCTCTGTGCCAATGAACTTTCTGTCCTTTGAGTTTTAGGGCCCAATTCAATCAGATCTGCTTCAGCAGACAGCCGCGTAGCTAATGTTTTGACGGTGTtggaggtggaactgcgttagagctgtcaaattcaCAAGTGGCTCCCAGCATGCAGTCGCGTTAAGAAAAAACCCATGCCGACTTGTTTACAagttggaacactggaatgtgagatgtaatccaCACCTCCATTATGCTGATTAGGAATCCTCATTTATTTTGTTAAATGATTTTTCAATTTGAGCGTAATTATTTCTCTATAGCCTTCACGTTGTCATTCTGAACTTCCTCCGTGACTGCAGCGGATTTTGTTACAATGATCGAGCAGCTGCTCACTGGTTTGACAGTTCCACTCACCTGCGACACCACCAAAACATCCGCTAAGCGGTTTCCTGCTGTCGCCGGTTAACGCTTGAACTGATTGAATGTAAAGCCTTAATCTAAAGACAACAGATTTGAGGATCATTAGAAAACTCGTACCctctttttttaattttttatcttGGGTGTTAAATCCCTTTAAGTTATTGGAGatgttttatttctttttttaaatatttcacTGTCGTTCCACAAATAGCCTTGCTGTAGGAGTGCCTTGGACGTGGGACCCAAATAACCAAGTTATTTCCCGAATACACAGACCCTGATTTAAAGTATTTATAATATCTACGGTATATTGCTTTTTCTCCGAGCTGGTGGCTTTTTTTCATATTGTTTTAACGGTTTGTCTTCATGACCAGTGTGCATGTTAGCATGATTTTGTTCAGGTTACGTTTTTTGTGTCTTTTGGACTTTTGAGGTAGTTTTGGCATTATGGTGAAAGTTTCTGAACTTTCCTCAGTTAAACTGAATGGTTcttcattgatccatttttttttttttaagtcttcAGCTGGCTGTTGTTTTTATATTCATAATTGAAACAAGTTTCCACCACATCATCCCATTGACACTGCCTGAGCCGACCTCTGCTGTACTGCAATCAAATCCATCAATGACCTGTATCTGTCATTGTTCTGGATAAGTGTTATCTCCCCCACTGTTTTCAGCACATTTGTTTACAGCTATACTGTATGAGTGAATAAATGTTTCAGAGTA

Function

NR:

description
protein phosphatase Slingshot homolog 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969630.1 False 5467 mRNA 0.48 17 27987952 28010322
TU2594407 True 3069 lncRNA 0.41 4 28007028 28010319

Neighbor

gene id symbol gene type direction distance location
LOC110504912 LOC106611698 coding upstream 26133 27958738 ~ 27961819 (+)
LOC110504911 NA coding upstream 33804 27953112 ~ 27954152 (+)
LOC110504909 LOC106611695 coding upstream 79522 27902697 ~ 27908430 (+)
LOC110504908 NA coding upstream 91479 27893486 ~ 27896473 (+)
trnap-ugg-72 NA coding upstream 95480 27892401 ~ 27892472 (+)
LOC118946038 NA coding downstream 44066 28054388 ~ 28056425 (+)
LOC110504919 LOC106611705 coding downstream 47090 28057412 ~ 28065727 (+)
trmt12 LOC106611794 coding downstream 145099 28155421 ~ 28163913 (+)
sytl4 LOC106611707 coding downstream 160139 28170461 ~ 28188340 (+)
LOC110504926 tsn7 coding downstream 188351 28198673 ~ 28209723 (+)
G2267924 NA non-coding upstream 24574 27961902 ~ 27963378 (+)
G2267962 NA non-coding upstream 31518 27956050 ~ 27956434 (+)
G2267955 NA non-coding upstream 33067 27954610 ~ 27954885 (+)
G2267946 NA non-coding upstream 59938 27927525 ~ 27928014 (+)
G2267925 NA non-coding downstream 3804 28014126 ~ 28014875 (+)
G2267930 NA non-coding downstream 10738 28021060 ~ 28021789 (+)
G2267978 NA non-coding downstream 14645 28024967 ~ 28025187 (+)
G2267923 NA non-coding downstream 19383 28029705 ~ 28030911 (+)
G2267994 NA non-coding downstream 58303 28068625 ~ 28070758 (+)
G2266826 NA other upstream 1052063 26934720 ~ 26935889 (+)
G2266668 LOC106611853 other upstream 1367004 26588592 ~ 26620948 (+)
LOC110504416 diaph1 other upstream 1615469 26298775 ~ 26483992 (+)
LOC118946064 NA other upstream 1695948 26289725 ~ 26292004 (+)
G2265744 NA other upstream 2009314 25978135 ~ 25978638 (+)
G2268340 NA other downstream 756555 28766877 ~ 28767729 (+)
G2268400 LOC106611722 other downstream 886433 28896755 ~ 28898079 (+)
G2271027 NA other downstream 3166568 31176890 ~ 31181107 (+)
G2272912 LOC106611792 other downstream 4853114 32863436 ~ 32866226 (+)
LOC110505056 LOC105028844 other downstream 5405768 33328263 ~ 33421963 (+)

Expression


Co-expression Network