LOC110504918 (LOC106611703)


Basic Information

Item Value
gene id LOC110504918
gene name LOC106611703
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 28066159 ~ 28090452 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583791.2
CATCGAAATTCAGGAGTAAAGTCAAACGCAGATGGCTTAGCTGCGATTTGCGAGTGTCGGCTCACTTGACCGCAGTGAAATTTCTAGTGGGGAAGTCAAGTGTCTGAACAACTGTATAAGTCGATGTCCTTTGTTAGCTAGTACTGACATATTTAGTTGTGTGTAACATGAACAATTTACCATAGATTCTGTCCATGTTTGATTAGGTCAAATGAGTTCAGGTCGCAAGCATGGCGCAATAATGTGCAAAACTCGACTCAACTGATTGGATTGGGACTGCCATTGCCTTGGACTTTCATGTTGATGTAGGAATCACATTTGTGACCGAAGATACAATGGCAGAAGAGGAGCCTTACCTACCTCACCAACCGTACAACTTTGACATAGATCCACTATGGGATCCCCTGAATTTCCCTCCCATGTCACACTCCAACTCACTCCGGACAGTTACAGCAGATGGGCCCTACCTCCAAATCATTGAACAGCCTAAACAGCGGGGCTTCAGGTTTCGTTATGGCTGTGAGGGACCTTCTCACGGCGGGCTACCAGGGGCCTCTAGTGAGAAGAACAGAAAGTCCTATCCCAATATCAAGATCTGTAACTATCAGGGGTTGGCACGTGTGGTGGTACAGCTGGTGACCAACTCTAAAGATGCCCACCTCCATGCCCACAGTTTGGTGGGCAAGCAGTGTGACAAGGGCATCTGCATCGCAGACCTACAGCCAAAAGACTCCAACATCAGTTTCCCCAACTTGGGCATCCTCCACGTGACCAAGAAGAACGTGAGTAAGACACTGGAGGACCGTATGTCTGAGGCCTACAGGATGGGCTACAACTGTGGTATCGTCATCCATCCCGAGATGGACGCCTTCCAGGGAGAGTTCCGCATCCCCCGAGAGCTCACTGatcaCCAGAGAAATCTGATCAGCAGCGCAGCGTCCTACCAGGCTAAAGAGATGGACCTGAGCGTGGTGCGCCTCATGTTCACAGCCTTCCTCCCAGACAGTGACGGGGGCTTCTCCCGTAGACTGGACCCCGTCATATCAGACCCCATCTTCGACAGCAAAGCTCCAAATGCATCTAACCTGAAGATAGTGCGGATGGACCGAACAGCTGGCTGTGtgacgggaggagaggaggtctaCCTGCTCTGTGACAAGGTTCAGAAAGATGACATCCAGGTGCGCTTCTATGAGGATGACGAGACAGGGCTGACATGGGAGGCCTTTGGGGACTTCTCCCCCACCGATGTCCACCGACAGTTTGCCATTGTTTTCAAGACCCCCAAATACAGAGACCTGAACCTCCAGAAACCCACCTCGGTGTTTGTGCAGCTGAAGCGTAAATCGGACAATGAGACGAGCGAGCCCAAGCCCTTCACCTACCATCCGCAGATCATAGATAAGGAAGAAgtgcagaggaagagacagaagaccCTGCCTAACTTCCAGGACTACAGCGGCCACGGTGGAGCAGGGGGCCTGTACCGgggaccagggggggggggtcccgctacagggggaggaggagGTTTCTTCCAGGGCTATTCCACCTACAATAATTATGGCACCAGCTACAACTCTGGCTTTTCCCCTGGCATGAGTGGTGGCGGGGCAGGAATTAAACATGCTCCACAAGGCAGAGCGGAGGACAGTGGTGATGACAGTGACATGAATGATGACCCGGCCTCAGGGGCAGTGGTGGGGGTCCGAGCCAAGTCAGAGGATGCCTCTGCTGGGGAGACGAGTGAAGAGGGCGGGGCCGGTGTGGAGCTAGGACCAGGGGACAGGACTGGAGAGTGTGTGCTGGTGGCCAGGCTGGTGGATGTTGCTGAGAGGCAGGCTGAAGCCCTCTTCCAGTACGCCGTCACTGGTGACGTCAGCTACCTGCTGGCTCCACAGCGCCAGCTCATGACTGCTCAGGACGAGAACGGTGACACTGGTCTCCATCTGGGGGTGATCCACAGCCAGACAGACGCAGTCAGGAGTCTAGCCCAGGTCCTCTCTGCCCTGCCTGGAGAGGAGGTCCTTAACATGAGAAACAACCTCTACCAgACTCCTTTGCACATAGCGGTGATAACACAGCAGAAGGCGGCAGCTGAGGCCCTCTTATTGGCTGGGGCTGATGTCACTCTGTGTGATCGCCACGGAAACACAGCTCTTCACCTGGCCGCCCAGCAGAAGGAGGGAGGTATGGTGGGATTTctactgagacacagagagatagtgGAACTAGTGGACCTCCCCAACACAGCAGGACTGTGCTccctccacctggctgtgctTGCCAACAGCCTGTGTTCCCTCAGGGACCTCCTGGTGAACGGGGGCAGTGTGGAGGTCCAGGAGAGGAGCTGCGGCCGCACGGCGCTCCATCTGGCCACTGAGCTGGACAACGTCTCCCTGGCAGGCTGCCTGCTACTGGAGGGGAATGCTGATGTGGACTGCTGCACCTACAACGGTTCCAGCCCTCTCCATACAGCCACAGGGCGGGGCTCTGTCAAGCTGACCGCTCTCCTCATGGCTGCAGGTGCCGATCCTCACAAAGAAAACTTTGAGCCCCTCTTCTTCAGAGAGCATGACTGCTGtatggatgaggaagaggaggaggacgaagGCTACATCCCAGGGACAACTCCTCTCAACATGGCTGCCACTCCTGAGGTGTTGGAAATCTTGAATGGAAAAGAGTACAAGCCCGAGACCTTCGTCTTCGTCCCCCCTCAAGGTGACATGCAGAGCCTGGGCTCAGACACAAAGCGGGCACTATGCCAGGCTCTGGAGTGCCCGGAGGATGGCTGGGAGATGCTGGCACACATACTGGGCCTGGGCATCCTCAACAGTGCCTTCAGACTCAGCTCCTCCCCCGCAAGCACGCTGCTGGACAGCTACGAGgtgtctggaggaaAGGTCAAGGACCTTTTGGAGGGACTCAGGACTGTAGGGAACTGCTCTGCTTTGACAGTACTGGAGGGGGCACTGCGTGAAACAGAACATGCTCCACCAGCCCCCCAAAGCACCACAAAACTCTTAGAACGCGTGTGTGATCTGAAGCTGGACGGATGGGAGGACAGCGGAGTGTGTGACAGTGGGGTGGAGCTCTCCACAGCGTGACCGCCAGATTGGTCCATCACATATCATGGCCCTGCCCACGTCATGAAGCTTCTGCTTCCTAAAAGCAGGCTATAGACTATTTCCCTCTGAAAGGGATGAATTCTACAAGCACACCTCACGCTAAATATCCTCACTTTTCTATTTGGCCCAGTAACATTTTGAAAGTGGTTTTGTATACGTAAATATAATATGCAGGTTATGTTTGGATAATGTTTGCATAATAAGTAATCTATTTGAAATGTGATGTTTGTATAAACATCATGAATGGGTTTTATTCGGGGGAAAAGGTGTTTCCAAGGTAACCAACCGCATGTAGTATAAATCCTTGAAACTAATAATTTATGAAAGATTCATTGACAATTAGAAACAAAATATGATCTGATATTTTCTCCTCCCACTAGTTAATTTAGTCAGTCAAACAAGCAGCCAATTCTAATAACACATTTTTTGTATGGCCCTCCGGACTATGCAAAGTCCATCTGGCCCCGGGGCAAAATGATTTCCAACACCTGATTTATAGGGCAGGGACCCCATACAGAATGGATTTTAACTGTAAACCGCTTTGGATTAATTATATGAAATTAAAATTGCCCCTATACAGCAGTAGTATGCTGCCAAAGGGATAGCTCATTGTTATGAATCTCCCACTCATAAAAAGTGATTCCGTACCTGTGGAAATGCTAAACATGGATAAAATGGTTTGTATTGGAACCAAGCAACCATTAACACCTCCCTCCTGCAATTTTTTTGTATCGTGTACAAAGTCAAATTGAATTTCCTATGGAAGTGGTGCTACCAGTCAATTATAAGTATAATGGATTATCCTCCACTATGCATGTCTGTTAGAGCACAATCCTCATCCTGGACTACAGTACAGAAACCACTTTTGGATATCCTTTAGTTAATTCCTGTGTAGACATGCTTTTCTCCATGTATCTGTATTGAGTTGGGGGGTAAACTCAGTTTTGGAAGCCATTTGTTTCTGGTTGTGTGTAATTTGCAGGTCCATTTTTTAAAATCACATGTTGAGTTCTGCGTGAAGATTTTAGAGAACGGTGCCATATTTTCTTCCCAATTTTGTAATGAAGTATTCAGCGTCCCTATTGATATTTCATGTTATCAACAGCAGATTGAAAGACATTTGTTTCATACAAGTTTGAAGCCATTCCAACATCTTCCTGACAACACTGGCATTTTTAGACATTAAAATGTGTATCTGTCCCAAGCAAAAGTTTGGATTGGCACTGCATCACTGTGTGGGGCTTCAATATTTATACCTGTACCATGTGAAACAGCTTTGTACAGTCAATGTTTGCTTTTTAATGGGTTTTATTGTAATAGTTTTTTAATAAAATTGTTAATGGTGTGCAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K02580 NFKB1; nuclear factor NF-kappa-B p105 subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583791.2 True 4484 mRNA 0.50 25 28066159 28090452
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110504917 LOC106611701 coding downstream 21500 28029948 ~ 28044659 (-)
LOC110504437 vpp3 coding downstream 41890 28011845 ~ 28024269 (-)
LOC110504915 NA coding downstream 54526 28007363 ~ 28011633 (-)
LOC110504913 LOC106611699 coding downstream 81193 27961895 ~ 27984966 (-)
LOC118946021 LOC106611696 coding downstream 113504 27828431 ~ 27952655 (-)
LOC110504921 LOC106611706 coding upstream 8531 28098983 ~ 28127992 (-)
LOC110504922 LOC103372938 coding upstream 41455 28131907 ~ 28134879 (-)
LOC110504923 aup1 coding upstream 47193 28137645 ~ 28153024 (-)
srpx2 srpx2 coding upstream 97305 28187757 ~ 28198633 (-)
LOC110504930 LOC106611712 coding upstream 238491 28328943 ~ 28358459 (-)
G2269010 NA non-coding downstream 8927 28057030 ~ 28057232 (-)
G2269008 NA non-coding downstream 10959 28054871 ~ 28055200 (-)
G2269006 NA non-coding downstream 12497 28053340 ~ 28053662 (-)
G2268945 NA non-coding downstream 44117 28021578 ~ 28022042 (-)
G2269030 NA non-coding upstream 3696 28094148 ~ 28094356 (-)
G2269028 NA non-coding upstream 4317 28094769 ~ 28094987 (-)
G2269048 NA non-coding upstream 78073 28168525 ~ 28168753 (-)
G2269051 NA non-coding upstream 118364 28208816 ~ 28209720 (-)
G2269063 NA non-coding upstream 119464 28209916 ~ 28210154 (-)
G2269004 NA other downstream 13472 28051204 ~ 28052687 (-)
LOC118946063 NA other downstream 562815 27481197 ~ 27503675 (-)
G2267521 LOC107579696 other downstream 956171 27109540 ~ 27109988 (-)
LOC110504893 LOC106590882 other downstream 1044079 27008474 ~ 27028053 (-)
G2269277 NA other upstream 515948 28606400 ~ 28606788 (-)
G2269291 NA other upstream 544478 28634930 ~ 28635299 (-)
G2270186 NA other upstream 1979926 30070378 ~ 30072129 (-)
G2270673 LOC106611749 other upstream 2193281 30283733 ~ 30319917 (-)

Expression

LOC110504918(LOC106611703) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110504918(LOC106611703) Expression in each Bioproject

Bar chart with 21 bars.
LOC110504918(LOC106611703) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network