LOC110504926 (tsn7)


Basic Information

Item Value
gene id LOC110504926
gene name tsn7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 28198673 ~ 28209723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583803.2
GGGATCAGTGACGACACTTCCCTTCTCCTTGGATTCTGTGATTTGTCGACAAAAGTTTTCCAGCAAGACGTTgtggaagtgttttttttttcttctctcactTAGTAACAACGATACTTTTTGATTGCCAATTTCTGCGAAATAGCCATAATGTCTCCCCCATCAAGAAGGCTTCAAACTAAGCCAGTGATTACATGTCTCAAGACCTTTCTTATTTCTTACAGTCTCATATTTTGGTTTACAGGGGTTATCCTTCTGGCTGTTGGAGTATGGGGGAAGGTGAGCCTGGAAGCTTATTTCCAGCTGGCCTCTGAGAAGAGCACCAACGCACCATATGTCCTCATCGGGACTGGAGCCATCATCATCACTTTTGGCCTGTTTGGTTGCTTCGCTACATGCCGCGGTAGCCCATGGATGCTGAAGCTGTATGCCATGTTCCTGGTGCTGGTGTTCATAGCTGAGTTTGTGGCCGGCATCTCTGGCTTCTTATTCAGACATGAGATAAAGGCTGTATTAGGTGATGCCTATAAAGACGCTGTGACGAACTACAATACCACTGACCCCAAAAGCTCTGCGGTTGACAACATCCAGAAGACTTTGCACTGCTGTGGAGTGGAAAGTTACACGGACTGGAACACAACAAAGTACTTCAAAGACCAAGGCATCCCTGACAGCTGTTGCAAAGAGAACACTGTCTGCCCTGTCGAGGACCTCAAGAACCTTGACAGGGCTCTCAACTTGGTGTATCACCCGGGCTGCTTCACGAAGGTGACCACTTTGATGGAGTCTAACCTGGGGATCATTGCCGGAATGTCTTTTGGAATTGCATTCTTCCAGCTCATTGGGGTGTTCTTGGCCTGCTGCTTGTCTCGATACATCACCAACAACCAGTACGAGATGGTCTAGCAGTGTCCTTTCACAGGTCACTAACGGGCAGGTCATGACGCACACCGATTCAAAGGGAACGCGCATAGTTTTAATCCTTGGTCTATGTGTAATGGTTCTGTCATTTCAGAATTCACTCTCGCTGACACTCACTTTTCAATGGCAACCAGACTGAAGGGAAAAAGTTATTGGAAACCATAAGGGATCGATTTCTGCAGTTCTCCATCGTTTTGATTAAGCTTTGTCTTGCTAAGGCTAGTGGAATACAGTTTGTGCTTGAATGTTCATTTGGGATTCACAGACtttataaatgtaatatttttcattcattgtctgttttaatgttattATAAATGACATATGTATTGCAATTTATTTGGTGAGCTTAGCAAAAATATTCATGTTTGTTATGTCCATATTCATTTCATTCTTCATCATAATTGCTGCCGTCATATTCTAGTTATATGGCATCTTGTGGTTAGGGATCTTACTGTAGTCTGCTATTTTCATGTTCAGCATTACAGTGACTGTAGTAGTGACTAATAAGGCCATCTGTAACACCACAGTAACTTCCATCCATCTCTTCTGTGGAGACGGGGAGAAAAGTATTGGAAGTTGTGTAGTAGCCTTTGCGGGTAGAGGGATGGATTGCATGCTGTGGACACTTAGTTTAATAGAGAAGAGAACAATTATACACCACCATGATTCTCGTGGGAACGTAAAGGTGTTTTATAAGCCTTTCGTGTGATTTACTGTAACTTTGGTGTGCAAGTCTTATGTTCACGTTTTCAAAAAATATGCATTTCCTCAGATGAAAATAATTGTCAGTGTTAATGGTTGTTGATTTGTGGAAACCGCATGTAAAATacttgaaaaataataataaaggtacCTAAACTCTTTAAAACAA
>XM_021583804.2
GGGATCAGTGACGACACTTCCCTTCTCCTTGGATTCTGTGATTTGTCGACAAAAGTTTTCCAGCAAGACGTTgtggaagtgttttttttttcttctctcactTAGTAACAACGATACTTTTTGATTGCCAATTTCTGCGAAATAGCCATAATGTCTCCCCCATCAAGAAGGCTTCAAACTAAGCCAGTGATTACATGTCTCAAGACCTTTCTTATTTCTTACAGTCTCATATTTTGGTTTACAGGGGTTATCCTTCTGGCTGTTGGAGTATGGGGGAAGGTGAGCCTGGAAGCTTATTTCCAGCTGGCCTCTGAGAAGAGCACCAACGCACCATATGTCCTCATCGGGACTGGAGCCATCATCATCACTTTTGGCCTGTTTGGTTGCTTCGCTACATGCCGCGGTAGCCCATGGATGCTGAAGCTGTATGCCATGTTCCTGGTGCTGGTGTTCATAGCTGAGTTTGTGGCCGGCATCTCTGGCTTCTTATTCAGACATGAGATAAAGGCTGTATTAGGTGATGCCTATAAAGACGCTGTGACGAACTACAATACCACTGACCCCAAAAGCTCTGCGGTTGACAACATCCAGAAGACTTTGCACTGCTGTGGAGTGGAAAGTTACACGGACTGGAACACAACAAAGTACTTCAAAGACCAAGGCATCCCTGACAGCTGTTGCAAAGAGAACACTGTCTGCCCTGTCGAGGACCTCAAGAACCTTGACAGGGCTCTCAACTTGGTGTATCACCCGGGCTGCTTCACGAAGGTGACCACTTTGATGGAGTCTAACCTGGGGATCATTGCCGGAATGTCTTTTGGAATTGCATTCTTCCAGCTCATTGGGGTGTTCTTGGCCTGCTGCTTGTCTCGATACATCACCAACAACCAGTACGAGATGGTCTAGCAGTGTCCTTTCACAGAATTCACTCTCGCTGACACTCACTTTTCAATGGCAACCAGACTGAAGGGAAAAAGTTATTGGAAACCATAAGGGATCGATTTCTGCAGTTCTCCATCGTTTTGATTAAGCTTTGTCTTGCTAAGGCTAGTGGAATACAGTTTGTGCTTGAATGTTCATTTGGGATTCACAGACtttataaatgtaatatttttcattcattgtctgttttaatgttattATAAATGACATATGTATTGCAATTTATTTGGTGAGCTTAGCAAAAATATTCATGTTTGTTATGTCCATATTCATTTCATTCTTCATCATAATTGCTGCCGTCATATTCTAGTTATATGGCATCTTGTGGTTAGGGATCTTACTGTAGTCTGCTATTTTCATGTTCAGCATTACAGTGACTGTAGTAGTGACTAATAAGGCCATCTGTAACACCACAGTAACTTCCATCCATCTCTTCTGTGGAGACGGGGAGAAAAGTATTGGAAGTTGTGTAGTAGCCTTTGCGGGTAGAGGGATGGATTGCATGCTGTGGACACTTAGTTTAATAGAGAAGAGAACAATTATACACCACCATGATTCTCGTGGGAACGTAAAGGTGTTTTATAAGCCTTTCGTGTGATTTACTGTAACTTTGGTGTGCAAGTCTTATGTTCACGTTTTCAAAAAATATGCATTTCCTCAGATGAAAATAATTGTCAGTGTTAATGGTTGTTGATTTGTGGAAACCGCATGTAAAATacttgaaaaataataataaaggtacCTAAACTCTTTAAAACAA

Function

NR:

description
tetraspanin-7-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583803.2 False 1795 mRNA 0.42 8 28198673 28209723
XM_021583804.2 True 1702 mRNA 0.42 8 28198673 28209723
Loading

Neighbor

gene id symbol gene type direction distance location
sytl4 LOC106611707 coding upstream 10333 28170461 ~ 28188340 (+)
trmt12 LOC106611794 coding upstream 34760 28155421 ~ 28163913 (+)
LOC110504919 LOC106611705 coding upstream 132946 28057412 ~ 28065727 (+)
LOC118946038 NA coding upstream 142248 28054388 ~ 28056425 (+)
LOC110504914 LOC106611700 coding upstream 188351 27987952 ~ 28010322 (+)
LOC110504927 NA coding downstream 15714 28225437 ~ 28244563 (+)
LOC110504299 NA coding downstream 46723 28256446 ~ 28307408 (+)
m1ip1 m1ip1 coding downstream 92681 28302404 ~ 28304890 (+)
trnav-uac-98 NA coding downstream 143894 28353617 ~ 28353689 (+)
LOC110504931 LOC106611711 coding downstream 148969 28358692 ~ 28370507 (+)
G2268060 NA non-coding upstream 28608 28169738 ~ 28170065 (+)
G2268059 NA non-coding upstream 29161 28169008 ~ 28169512 (+)
G2268058 NA non-coding upstream 30072 28168234 ~ 28168601 (+)
G2268038 NA non-coding upstream 61949 28136520 ~ 28136724 (+)
G2268037 NA non-coding upstream 62232 28136160 ~ 28136441 (+)
G2268078 NA non-coding downstream 3911 28213634 ~ 28214329 (+)
G2268088 NA non-coding downstream 9920 28219643 ~ 28219948 (+)
G2268103 NA non-coding downstream 71448 28281171 ~ 28285957 (+)
G2268083 NA non-coding downstream 86450 28296173 ~ 28299867 (+)
G2268132 NA non-coding downstream 141474 28351197 ~ 28351400 (+)
G2266826 NA other upstream 1262784 26934720 ~ 26935889 (+)
G2266668 LOC106611853 other upstream 1577725 26588592 ~ 26620948 (+)
LOC110504416 diaph1 other upstream 1826190 26298775 ~ 26483992 (+)
LOC118946064 NA other upstream 1906669 26289725 ~ 26292004 (+)
G2265744 NA other upstream 2220035 25978135 ~ 25978638 (+)
G2268340 NA other downstream 557154 28766877 ~ 28767729 (+)
G2268400 LOC106611722 other downstream 687032 28896755 ~ 28898079 (+)
G2271027 NA other downstream 2967167 31176890 ~ 31181107 (+)
G2272912 LOC106611792 other downstream 4653713 32863436 ~ 32866226 (+)
LOC110505056 LOC105028844 other downstream 5206367 33328263 ~ 33421963 (+)

Expression

LOC110504926(tsn7) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
End of interactive chart.

LOC110504926(tsn7) Expression in each Bioproject

Bar chart with 21 bars.
LOC110504926(tsn7) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
End of interactive chart.

Co-expression Network