trnav-uac-98


Basic Information

Item Value
gene id trnav-uac-98
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 28353617 ~ 28353689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnav-uac-98
GGTTccatagtgtagtggttatcacgtctGCTTTACACGCAGAAGGTCCTGGGTTCGAGCCCCAGTGGAACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnav-uac-98 True 73 mRNA 0.53 1 28353617 28353689

Neighbor

gene id symbol gene type direction distance location
LOC110504299 NA coding upstream 46209 28256446 ~ 28307408 (+)
m1ip1 m1ip1 coding upstream 48727 28302404 ~ 28304890 (+)
LOC110504927 NA coding upstream 109054 28225437 ~ 28244563 (+)
LOC110504926 tsn7 coding upstream 143894 28198673 ~ 28209723 (+)
sytl4 LOC106611707 coding upstream 165277 28170461 ~ 28188340 (+)
LOC110504931 LOC106611711 coding downstream 5003 28358692 ~ 28370507 (+)
LOC110504300 NA coding downstream 48560 28402249 ~ 28404199 (+)
LOC110504934 LOC106611715 coding downstream 53329 28407018 ~ 28409839 (+)
LOC110504935 LOC106611716 coding downstream 56622 28410311 ~ 28425659 (+)
LOC110504439 LOC106611717 coding downstream 82395 28436084 ~ 28664707 (+)
G2268133 NA non-coding upstream 1244 28351818 ~ 28352373 (+)
G2268132 NA non-coding upstream 2217 28351197 ~ 28351400 (+)
G2268083 NA non-coding upstream 53750 28296173 ~ 28299867 (+)
G2268103 NA non-coding upstream 67660 28281171 ~ 28285957 (+)
G2268088 NA non-coding upstream 133669 28219643 ~ 28219948 (+)
G2268147 NA non-coding downstream 35303 28388992 ~ 28389324 (+)
G2268151 NA non-coding downstream 40709 28394398 ~ 28394676 (+)
G2268152 NA non-coding downstream 41066 28394755 ~ 28394961 (+)
G2268153 NA non-coding downstream 42279 28395968 ~ 28396232 (+)
G2268160 NA non-coding downstream 48716 28402405 ~ 28402690 (+)
G2266826 NA other upstream 1417728 26934720 ~ 26935889 (+)
G2266668 LOC106611853 other upstream 1732669 26588592 ~ 26620948 (+)
LOC110504416 diaph1 other upstream 1981134 26298775 ~ 26483992 (+)
LOC118946064 NA other upstream 2061613 26289725 ~ 26292004 (+)
G2265744 NA other upstream 2374979 25978135 ~ 25978638 (+)
G2268340 NA other downstream 413188 28766877 ~ 28767729 (+)
G2268400 LOC106611722 other downstream 543066 28896755 ~ 28898079 (+)
G2271027 NA other downstream 2823201 31176890 ~ 31181107 (+)
G2272912 LOC106611792 other downstream 4509747 32863436 ~ 32866226 (+)
LOC110505056 LOC105028844 other downstream 5062401 33328263 ~ 33421963 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) trnav-uac_4 NA coding NC_047605.1 CM018551.1 19313496 ~ 19313568 (-)
striped catfish (Pangasianodon hypophthalmus) trnav-uac_7 NA coding NC_047606.1 CM018552.1 5473398 ~ 5473470 (-)
tiger barb (Puntius tetrazona) trnav-uac_6 NA coding NC_056712.1 CM032081.1 24051703 ~ 24051775 (+)
mexican tetra (Astyanax mexicanus) trnav-uac_4 NA coding NC_035920.1 CM008323.1 16630979 ~ 16631051 (-)
mexican tetra (Astyanax mexicanus) trnav-uac_7 NA misc NW_019171985.1 APWO02001583.1 100300 ~ 100372 (+)