LOC110504934 (LOC106611715)


Basic Information

Item Value
gene id LOC110504934
gene name LOC106611715
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 28407018 ~ 28409839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583814.2
TTCACAGGAAAGAATAGTCAGTGTTTCAGTGAATACACTGAATAGCGGCCGCGGAGAAACTAGCTTGGTGGTGAGACCGGGACATACAATACCGAAGATGGCTTCACCGAGGACGATAACCATTGTGGCCCTCTCTTTCGCTCTTGGTCTTTTTTTCGTCTTCATGGGCACCATAAAGCTCACACCAAGATTAAGCAAAGATGCTTATAGTGAGATGaaACGGGCATACAAGAGCTATGCCAAGGCTTTGCCAGGTCTAAAGAAGATGGGCATCAGCTCGGTGCTGCTCCGTAAGATCATTGGCTCACTGGAGGTGGGCTGTGGTGTGGTTCTGACATTGGTGCCAGGGAGACCCAAGGATGTGGCTAACTTCCTGCTCTTGCTGGTCATGCTGGCTGTCCTCTTCTTCCATCAGTTAGTAGGAGACCCCCTGAAACGATATGCCCATGCTCTGGTCTTTGGTATTCTGCTCACCTGCCGACTGCTCATTGCCCGCCAGAGTGAGGACCGACCTGAGCGGGAGGAGAGCAGGGAAGAACATATCAATGCCCAGGAAAATAACAAAGTCAAGCAGTCCTAATCAGGTCCAACCATCCAGTCTGGGCAGAGTGACAGCAAAATGGAACCTTGTGCATTTCTTTGGATTGGAGCAATTCAGATTCAAAAGAAACACAGTCGCCACAAGGAGTGATATATCCCAGTCAACCACCCACCTGTCCCCTCTCCCACCCTTTTGGCTGACTGGTTATTGGTTTCACCTGCTTCCCTGCACTCTCATCCTAAAACTGATTTCCCCTTGTCCTGTATCCCAACCTTGACAGTGGACAATCATACTTGTGGCAACTGTAATCAGCTCAACTCTTTTGAAAAAATATACAACCTTTGTCTCACcttttttctctttccctcccattTTTATTTAGCATCTTTCAAAACATAAGATACAGCATGCCTATGTTTTTAGTTCGTTTTTTGCACAAATACCAATTTGAGGGACTTTGTTGGCTTTGAGAATGCTGATGTTTTCCACTATTGAAGATTGGTACTTTTGTATTGATCTTAATTTTAGGTAGGAAGATAATGATATCTCTTGAATTCAATTGTTATTTTACAGTAATTAAGCATGGTTCATAATTAAATGGCTTAAAACAAACTCATAGCTTATCAGCACTGTCCAGAGATATATTGTAGTTGAACATTGACTCACATTTATTTAAATACATTATACAGTATCACATATTTCCATTGGTATTAGTAAAATAAGAATCATTTTTGTGAATTCGTATTAGTTTCGTCCAAGCTTTTTCCTGATGATTAGATTTTCTTGTAACTACTCTTAGGCATGACAATGTACCCCTTTTCCCGAAAGAAAAACCAAACTGTCAAATGGTCAAAAGTCTTTCACTCATCTCAAATTGATTAATCACTTTGTTGGACCCAACACTGTTGTTCAAGAACTCATGTGGAGGAGAGACCTATGGGAAGGCATTTTTCTAGCAATTATGTTGAAACATACATCTATGGTTGCTAGCCTAGTGCTCTCTATGTCTCTGGACCACAATCAATAGTCCAGCTGCTTTGTCAAATGACATATCCAATAAAGGACTTGATCTTTGTCTCTTAATAAAGGACTTTGTCTCTCTTCACATCCAATGACAATAAAGGCTTATGTTTATCTGTGA

Function

NR:

description
PREDICTED: transmembrane protein 35-like

GO:

id name namespace
GO:0005778 peroxisomal membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583814.2 True 1682 mRNA 0.42 2 28407018 28409839

Neighbor

gene id symbol gene type direction distance location
LOC110504300 NA coding upstream 2819 28402249 ~ 28404199 (+)
LOC110504931 LOC106611711 coding upstream 36511 28358692 ~ 28370507 (+)
trnav-uac-98 NA coding upstream 53329 28353617 ~ 28353689 (+)
LOC110504299 NA coding upstream 99610 28256446 ~ 28307408 (+)
m1ip1 m1ip1 coding upstream 102128 28302404 ~ 28304890 (+)
LOC110504935 LOC106611716 coding downstream 472 28410311 ~ 28425659 (+)
LOC110504439 LOC106611717 coding downstream 26245 28436084 ~ 28664707 (+)
LOC110504936 LOC106611718 coding downstream 294564 28704403 ~ 28722745 (+)
LOC110504939 LOC106611720 coding downstream 318177 28728016 ~ 28748262 (+)
LOC110504941 LOC106611721 coding downstream 409256 28819095 ~ 28834169 (+)
G2268160 NA non-coding upstream 4328 28402405 ~ 28402690 (+)
G2268153 NA non-coding upstream 10786 28395968 ~ 28396232 (+)
G2268152 NA non-coding upstream 12057 28394755 ~ 28394961 (+)
G2268151 NA non-coding upstream 12342 28394398 ~ 28394676 (+)
G2268147 NA non-coding upstream 17694 28388992 ~ 28389324 (+)
G2268211 NA non-coding downstream 88726 28498565 ~ 28498838 (+)
G2268214 NA non-coding downstream 95547 28505386 ~ 28505621 (+)
G2268217 NA non-coding downstream 97526 28507365 ~ 28507578 (+)
G2268220 NA non-coding downstream 100850 28510689 ~ 28511106 (+)
G2268222 NA non-coding downstream 102563 28512402 ~ 28512607 (+)
G2266826 NA other upstream 1471129 26934720 ~ 26935889 (+)
G2266668 LOC106611853 other upstream 1786070 26588592 ~ 26620948 (+)
LOC110504416 diaph1 other upstream 2034535 26298775 ~ 26483992 (+)
LOC118946064 NA other upstream 2115014 26289725 ~ 26292004 (+)
G2265744 NA other upstream 2428380 25978135 ~ 25978638 (+)
G2268340 NA other downstream 357038 28766877 ~ 28767729 (+)
G2268400 LOC106611722 other downstream 486916 28896755 ~ 28898079 (+)
G2271027 NA other downstream 2767051 31176890 ~ 31181107 (+)
G2272912 LOC106611792 other downstream 4453597 32863436 ~ 32866226 (+)
LOC110505056 LOC105028844 other downstream 5006251 33328263 ~ 33421963 (+)

Expression


Co-expression Network