Gene
RNA
| Item | Value |
|---|---|
| gene id | cd40l |
| gene name | cd40l |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050571.1 |
| NCBI id | CM025858.1 |
| chromosome length | 44108611 |
| location | 28885566 ~ 28888962 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cd40l | tumor necrosis factor ligand superfamily member 5 |
| description |
|---|
| TNF superfamily member 5 |
| id | name | namespace |
|---|---|---|
| GO:0006955 | immune response | biological_process |
| GO:0005615 | extracellular space | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005125 | cytokine activity | molecular_function |
| GO:0005164 | tumor necrosis factor receptor binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001124666.1 | True | 1227 | mRNA | 0.49 | 5 | 28885566 | 28888962 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110504942 | vgll1 | coding | upstream | 46888 | 28835262 ~ 28838678 (+) |
| LOC110504941 | LOC106611721 | coding | upstream | 51397 | 28819095 ~ 28834169 (+) |
| LOC110504939 | LOC106611720 | coding | upstream | 137304 | 28728016 ~ 28748262 (+) |
| LOC110504936 | LOC106611718 | coding | upstream | 162821 | 28704403 ~ 28722745 (+) |
| LOC110504439 | LOC106611717 | coding | upstream | 223994 | 28436084 ~ 28664707 (+) |
| LOC110504943 | LOC106611723 | coding | downstream | 39779 | 28928741 ~ 28947689 (+) |
| LOC110504946 | LOC106611728 | coding | downstream | 174802 | 29063764 ~ 29068534 (+) |
| LOC118946044 | NA | coding | downstream | 219082 | 29108044 ~ 29112791 (+) |
| f9a | LOC106611733 | coding | downstream | 607858 | 29496820 ~ 29501604 (+) |
| LOC110504958 | LOC106611797 | coding | downstream | 928618 | 29817580 ~ 29825990 (+) |
| G2268392 | NA | non-coding | upstream | 10406 | 28874878 ~ 28875160 (+) |
| G2268384 | NA | non-coding | upstream | 19153 | 28866152 ~ 28866413 (+) |
| G2268382 | NA | non-coding | upstream | 22170 | 28863080 ~ 28863396 (+) |
| G2268380 | NA | non-coding | upstream | 24087 | 28861267 ~ 28861479 (+) |
| G2268375 | NA | non-coding | upstream | 33511 | 28848717 ~ 28852055 (+) |
| G2268419 | LOC106611724 | non-coding | downstream | 34684 | 28923646 ~ 28924561 (+) |
| G2268426 | NA | non-coding | downstream | 55102 | 28944064 ~ 28944558 (+) |
| G2268435 | NA | non-coding | downstream | 72608 | 28961570 ~ 28961960 (+) |
| G2268502 | NA | non-coding | downstream | 160186 | 29049148 ~ 29091292 (+) |
| G2268532 | NA | non-coding | downstream | 213299 | 29102261 ~ 29106107 (+) |
| G2268340 | NA | other | upstream | 117837 | 28766877 ~ 28767729 (+) |
| G2266826 | NA | other | upstream | 1949677 | 26934720 ~ 26935889 (+) |
| G2266668 | LOC106611853 | other | upstream | 2264618 | 26588592 ~ 26620948 (+) |
| LOC110504416 | diaph1 | other | upstream | 2513083 | 26298775 ~ 26483992 (+) |
| LOC118946064 | NA | other | upstream | 2593562 | 26289725 ~ 26292004 (+) |
| G2268400 | LOC106611722 | other | downstream | 7793 | 28896755 ~ 28898079 (+) |
| G2271027 | NA | other | downstream | 2287928 | 31176890 ~ 31181107 (+) |
| G2272912 | LOC106611792 | other | downstream | 3974474 | 32863436 ~ 32866226 (+) |
| LOC110505056 | LOC105028844 | other | downstream | 4527128 | 33328263 ~ 33421963 (+) |
| LOC110505080 | LOC106611630 | other | downstream | 5313121 | 34202011 ~ 34207415 (+) |
