LOC110504954 (LOC106611736)


Basic Information

Item Value
gene id LOC110504954
gene name LOC106611736
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 29714139 ~ 29715857 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583862.2
CGGACAAGTTTGCAGAGTTCTGTTTCAGAGCACTGAGAAATTGGAAGCACCTGACAAACTAACATTGCCTGAGCTTCTTTTGACAACTTTTTTTTCCCTCACATGAGACTGGTCAGTACTATTTCTATCTCTCTTGTCTTTGATGGTATTTTGTTGAACTTTATCCACGCCTGAGAGTGAACATTTCAAAGCCGTTCGAATGTATAACATGATGGAAACTGAGATCAAGAGCCCACTCCCGCAGTCCAATTCGGGTTCAGCGGCGGGCAACAAGAACAACAGTGCCAACGACCAGGACCGGGTGAAGCGGCCTATGAATGCTTTCATGGTGTGGTCCCGTGGACAGCGGCGAAAGATGGCACAAGAGAACCCTAAAATGCACAACTCTGAGATTAGCAAGCGGCTCGGTGCAGACTGGAAACTTTTGACCGACGCGGAGAAGAGACCCTTCATCGACGAGGCCAAGCGTCTGCGCGCCATGCACATGAAGGAGCATCCGGATTACAAATACCGTCCCCGCAGGAAGACCAAGACCCTGCTCAAGAAAGACAAGTATTCTTTGCCTGGAGGACTTCTGGCGCCAGGTGCCAACGCTGTCAACAACGGCGTCTCGGTGGGACAGCGGATGGACAGTTATGCTCACATGAATGGCTGGACCAACAGTGCGTACTCCCTCATGCAGGACCAGTTGGCCTACCCTCAGCATCACAGCCCACAGATTCAGCAGATGCACCGGTATGAGATGGCAGGGCTCCAGTACCCCATGATGTCCTCGGCGCAAACCTACATGAACGCAGCATCCACGTACAGCATGTCCCCCGCATACACGCAGCAAACCTCCAGTGCCATGGGCTTGGGTTCCATGGCCTCCGTGTGCAAGACCGAGCCGAGCTCACCACCTCCGGCGATTACTTCTCATTCCCAGAGAGCGTGTTTGGGGGACCTGAGGGATATGATCAGCATGTACCTGCCTCCCGGTGGCGACAGCGCGGATCACCCGTCCCTGCAGACCAGTCGGTTACACAGTGTACATCCGCACTATCAGACCGCGGGGACTGGCGTGAACGGAACGCTACCCCTAACCCACATTTGAAAAAATGACTATAAACTTAAGTACTTCGTATACTTGAACATTTTGATTGCTAAAATAATCGCCGTTCAGTAGTTAAAAAAACAATAATGCatttgatttttttatttcaatGAGTTGTCCATTTTAAAGCATTTTAAAACTACATATCCTGGATTGAAACTGAATGTTCAGTCCACCAGAGTAAATTGCATTGCAAATAGGCTTTTATCATGATTTATAAGCAATCAACTTCTGTAGAAGAATTGGACTTCTATTTTAATAATGCCATATTTTCTCTGAAAATGGCATCTGGCCTCGTGAAGAGGCGTTGTATTTCAGAAAAGCTGGATTGAGAGTTGGTTCATACGTGTTTACACTTAATTTGTAGAATGTCAGTGTCGGCTGTGTCCAAATCTTTGTAGTCTTTTTCTTCATGACCTAGGTTTTAATGAAATGTAAGACTGTGGGGTGCAAGTTTTTAtttatagtattttttttaatgttataatgttccatttttgtttgacattttttaGTCCGGTTAACCCATATCATGGGCCAGGAGGTCTTATTTAAAACTGACGTTTCTACTTATTTTAAGACCATCCTCTATTCTTAAATGATGAATAAATTTGTACGAAACAAGA

Function

NR:

description
transcription factor Sox-3-like

GO: NA

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583862.2 True 1719 mRNA 0.46 1 29714139 29715857

Neighbor

gene id symbol gene type direction distance location
LOC110504953 LOC106611735 coding downstream 104916 29536330 ~ 29609223 (-)
mcf2a LOC106611731 coding downstream 181812 29501548 ~ 29532327 (-)
fgf13a LOC106611730 coding downstream 229666 29273993 ~ 29484473 (-)
LOC110504948 NA coding downstream 568148 29111130 ~ 29145991 (-)
LOC110504947 LOC106611727 coding downstream 660069 29049103 ~ 29054070 (-)
LOC110504956 LOC106611738 coding upstream 31585 29747442 ~ 29751487 (-)
LOC110504957 LOC106611739 coding upstream 46984 29762841 ~ 29794188 (-)
LOC110504962 pdzd11 coding upstream 133085 29848942 ~ 29853435 (-)
LOC110504969 LOC106611747 coding upstream 517210 30233067 ~ 30256177 (-)
LOC110504972 NA coding upstream 554132 30269989 ~ 30279397 (-)
G2269819 NA non-coding downstream 34439 29679278 ~ 29679700 (-)
G2269799 NA non-coding downstream 55343 29658536 ~ 29658796 (-)
G2269793 NA non-coding downstream 65688 29648246 ~ 29648451 (-)
G2269789 NA non-coding downstream 73165 29635791 ~ 29640974 (-)
G2269767 NA non-coding downstream 117902 29593916 ~ 29596237 (-)
G2270080 NA non-coding upstream 68193 29784050 ~ 29784278 (-)
G2270098 NA non-coding upstream 93744 29809601 ~ 29809845 (-)
G2270103 NA non-coding upstream 97175 29813032 ~ 29813396 (-)
G2270106 NA non-coding upstream 101295 29817152 ~ 29817476 (-)
G2270109 LOC106611797 non-coding upstream 104476 29820333 ~ 29825752 (-)
G2269291 NA other downstream 1078840 28634930 ~ 28635299 (-)
G2269277 NA other downstream 1107351 28606400 ~ 28606788 (-)
LOC110504930 LOC106611712 other downstream 1379186 28328943 ~ 28358459 (-)
G2269004 NA other downstream 1661452 28051204 ~ 28052687 (-)
LOC118946021 LOC106611696 other downstream 1761555 27828431 ~ 27952655 (-)
G2270186 NA other upstream 354521 30070378 ~ 30072129 (-)
G2270673 LOC106611749 other upstream 567876 30283733 ~ 30319917 (-)
LOC110504988 LOC106515624 other upstream 852512 30566629 ~ 30575299 (-)
LOC110505004 LOC102314576 other upstream 1456391 31172148 ~ 31175109 (-)
G2272324 NA other upstream 2537526 32253383 ~ 32253938 (-)

Expression


Co-expression Network