LOC110504962 (pdzd11)


Basic Information

Item Value
gene id LOC110504962
gene name pdzd11
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 29848942 ~ 29853435 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583874.2
GGGAAGTTGTCTTTTTTGCCTGGTAAGATTGTTTGTTGCtatttgtagctagctaacagtagatTACATTAATAAAATAACGGTGTTTATATTTTGGATTCATTGTAACATTTAAAGTCATCTGTAGTTTACTTGCTACACTTGCGTTATTTTGTAAGAATGAAGATGGTGCAGCTCGTAATCACCgcctaagctagctagctaactggtgATAGCTAGCGAACAACAAATGTCAGGACACGCTTCCCAGCTGGCACGCGAGGAATATTGATTTTGTTCTTGATATTTTCGACAACAAGGGTTTTGAAACCATGGACCAAAAGATCCCGTATGATGACTACCAACTCCCAGTTGTCTTTTTGCCTTCCTACGAGAGTCCCCCAGCATGGATAGCCCCGCAGGAGcgTATCCACCATCCTGACTACAACAATGAGCTGACCCAGTTCCTGCCACGCACCATTGTGTTGAAGAAACCTCCGGGGGCACAGTTAGGCTTCAACATCCGTGGGGGCAAGGCCTCTCAGCTGGGCATCTTCATCTCcaagGTGGTCCCAGATTCGGACGCCCACAGAGCAGAGCTCCAGGAGGGAGATCAGGTGCTGTCTGTCAATGAAGTGGACTTCCAGGACATAGAGCACTCGAGGGCTGTTGAGATTCTGAAGACTGCCAGAGAGATTCTGATGAGGGTGCGCTTCTTTCCCTACAACTACCAGAGACAGAAGGAAAGGACTGTGCACTAGGTGGCAGACGAGTTCCccgggagagagtgtgtgagtgagtgtccgTCTTGTAGGAGTTGATGCCCTTGGTGGATAGACCTGCACTTCACTAGTGTCCTCCTCCCACAGACTACAGCCCCTGTCCTCCGTTTCAACCTAAGGATGAACGACCGCATGACAAACTGGATCCATTCACATTTACACCCCAGAACCACGTAAAGACAATGCATTCCCCCTCCGCATACTAAACGATGCACACTGCTTCAGATGCTGAAAGGATGTTGTTATATCAGGTGTTCACTCACTTACACAGTGAGTCATGCCCTGAAGACACGACATAGAGTAATGTATATTATTTACATACCATAATGCTCCAGGTCCCTAAAAgatagggtcctgaaaaggggtttctgtttttgctgagtttatagaCATACACAcgcttcggaaagtattcagaccccttgactttttccacattttacgttagccttattctaaaattacattgtttttaaaaaattgttgcctttatatttttgttcagtgtatttataTACATTTATACACAGTTTAATGATATTCCAAAAAACATTATATTGGACCGAGGACCTGATAATGCCTTGATACTATAAAAGATGAAGTTCATTTAATATGAAATGTTTCCATTATCTAAGATAACATTTTTCCAGGCTAGCTATTACACAAAAAAACTGCAGAACTATTATTAACAAATTATATTTGACATAACATGTCGACTATTAAGGTGCCAACATCCTTCATTCAAACATGGCGACACCATAATCTCATAAATTAATACTTGCCTTGTATGAAGCTCAATACATTAAACAAAATCACATTGTTTCATGTGCCGTAGTTTAGGATCCGTCACTTATAAAATGTCAGCACGGAATGAGTTCCAACTCTGTTTTTACATGTCAAAATAGATTAGATGGTGTAAATAAATCACTCGTCCATTAATGACCCTAAAGACGGAGTCAGGATAGTAGAACCTGTTTTCACTGTGTCAACTCTATCTTCTGTCCTGTGACCCACTTCACAGATCATGCTCTTGTAAAACACTAAATAAAACACGTCTAAACTCTCAA
>XM_021583876.2
GGGAAGTTGTCTTTTTTGCCTGGTAAGATTGTTTGTTGCtatttgtagctagctaacagtagatTACATTAATAAAATAACGGTGTTTATATTTTGGATTCATTGTAACATTTAAAGTCATCTGTAGTTTACTTGCTACACTTGCGTTATTTTGTAAGAATGAAGATGGTGCAGCTCGTAATCACCgcctaagctagctagctaactggtgATAGCTAGCGAACAACAAATGTCAGGACACGCTTCCCAGCTGGCACGCGAGGAATATTGATTTTGTTCTTGATATTTTCGACAACAAGGGTTTTGAAACCATGGACCAAAAGATCCCGTATGATGACTACCAACTCCCAGTTGTCTTTTTGCCTTCCTACGAGAGTCCCCCAGCATGGATAGCCCCGCAGGAGcgTATCCACCATCCTGACTACAACAATGAGCTGACCCAGTTCCTGCCACGCACCATTGTGTTGAAGAAACCTCCGGGGGCACAGTTAGGCTTCAACATCCGTGGGGGCAAGGCCTCTCAGCTGGGCATCTTCATCTCcaagGTGGTCCCAGATTCGGACGCCCACAGAGCAGAGCTCCAGGAGGGAGATCAGGTGCTGTCTGTCAATGAAGTGGACTTCCAGGACATAGAGCACTCGAGGGCTGTTGAGATTCTGAAGACTGCCAGAGAGATTCTGATGAGGGTGCGCTTCTTTCCCTACAACTACCAGAGACAGAAGGAAAGGACTGTGCACTAGGTGGCAGACGAGTTCCccgggagagagtgtgtgaACTACAGCCCCTGTCCTCCGTTTCAACCTAAGGATGAACGACCGCATGACAAACTGGATCCATTCACATTTACACCCCAGAACCACGTAAAGACAATGCATTCCCCCTCCGCATACTAAACGATGCACACTGCTTCAGATGCTGAAAGGATGTTGTTATATCAGGTGTTCACTCACTTACACAGTGAGTCATGCCCTGAAGACACGACATAGAGTAATGTATATTATTTACATACCATAATGCTCCAGGTCCCTAAAAgatagggtcctgaaaaggggtttctgtttttgctgagtttatagaCATACACAcgcttcggaaagtattcagaccccttgactttttccacattttacgttagccttattctaaaattacattgtttttaaaaaattgttgcctttatatttttgttcagtgtatttataTACATTTATACACAGTTTAATGATATTCCAAAAAACATTATATTGGACCGAGGACCTGATAATGCCTTGATACTATAAAAGATGAAGTTCATTTAATATGAAATGTTTCCATTATCTAAGATAACATTTTTCCAGGCTAGCTATTACACAAAAAAACTGCAGAACTATTATTAACAAATTATATTTGACATAACATGTCGACTATTAAGGTGCCAACATCCTTCATTCAAACATGGCGACACCATAATCTCATAAATTAATACTTGCCTTGTATGAAGCTCAATACATTAAACAAAATCACATTGTTTCATGTGCCGTAGTTTAGGATCCGTCACTTATAAAATGTCAGCACGGAATGAGTTCCAACTCTGTTTTTACATGTCAAAATAGATTAGATGGTGTAAATAAATCACTCGTCCATTAATGACCCTAAAGACGGAGTCAGGATAGTAGAACCTGTTTTCACTGTGTCAACTCTATCTTCTGTCCTGTGACCCACTTCACAGATCATGCTCTTGTAAAACACTAAATAAAACACGTCTAAACTCTCAA
>XM_021583873.2
ATTCCATCCTTGATGGACAATAAAGTTTTATTATTTTCTATGCAGTTATCCATCACTCGTCAGCAGGGCGTGGCTTGAAGGGGAAGTTGTCTTTTTTGCCTGGTTTTGAAACCATGGACCAAAAGATCCCGTATGATGACTACCAACTCCCAGTTGTCTTTTTGCCTTCCTACGAGAGTCCCCCAGCATGGATAGCCCCGCAGGAGcgTATCCACCATCCTGACTACAACAATGAGCTGACCCAGTTCCTGCCACGCACCATTGTGTTGAAGAAACCTCCGGGGGCACAGTTAGGCTTCAACATCCGTGGGGGCAAGGCCTCTCAGCTGGGCATCTTCATCTCcaagGTGGTCCCAGATTCGGACGCCCACAGAGCAGAGCTCCAGGAGGGAGATCAGGTGCTGTCTGTCAATGAAGTGGACTTCCAGGACATAGAGCACTCGAGGGCTGTTGAGATTCTGAAGACTGCCAGAGAGATTCTGATGAGGGTGCGCTTCTTTCCCTACAACTACCAGAGACAGAAGGAAAGGACTGTGCACTAGGTGGCAGACGAGTTCCccgggagagagtgtgtgagtgagtgtccgTCTTGTAGGAGTTGATGCCCTTGGTGGATAGACCTGCACTTCACTAGTGTCCTCCTCCCACAGACTACAGCCCCTGTCCTCCGTTTCAACCTAAGGATGAACGACCGCATGACAAACTGGATCCATTCACATTTACACCCCAGAACCACGTAAAGACAATGCATTCCCCCTCCGCATACTAAACGATGCACACTGCTTCAGATGCTGAAAGGATGTTGTTATATCAGGTGTTCACTCACTTACACAGTGAGTCATGCCCTGAAGACACGACATAGAGTAATGTATATTATTTACATACCATAATGCTCCAGGTCCCTAAAAgatagggtcctgaaaaggggtttctgtttttgctgagtttatagaCATACACAcgcttcggaaagtattcagaccccttgactttttccacattttacgttagccttattctaaaattacattgtttttaaaaaattgttgcctttatatttttgttcagtgtatttataTACATTTATACACAGTTTAATGATATTCCAAAAAACATTATATTGGACCGAGGACCTGATAATGCCTTGATACTATAAAAGATGAAGTTCATTTAATATGAAATGTTTCCATTATCTAAGATAACATTTTTCCAGGCTAGCTATTACACAAAAAAACTGCAGAACTATTATTAACAAATTATATTTGACATAACATGTCGACTATTAAGGTGCCAACATCCTTCATTCAAACATGGCGACACCATAATCTCATAAATTAATACTTGCCTTGTATGAAGCTCAATACATTAAACAAAATCACATTGTTTCATGTGCCGTAGTTTAGGATCCGTCACTTATAAAATGTCAGCACGGAATGAGTTCCAACTCTGTTTTTACATGTCAAAATAGATTAGATGGTGTAAATAAATCACTCGTCCATTAATGACCCTAAAGACGGAGTCAGGATAGTAGAACCTGTTTTCACTGTGTCAACTCTATCTTCTGTCCTGTGACCCACTTCACAGATCATGCTCTTGTAAAACACTAAATAAAACACGTCTAAACTCTCAA
>XM_021583875.2
ATTCCATCCTTGATGGACAATAAAGTTTTATTATTTTCTATGCAGTTATCCATCACTCGTCAGCAGGGCGTGGCTTGAAGGGGAAGTTGTCTTTTTTGCCTGGTTTTGAAACCATGGACCAAAAGATCCCGTATGATGACTACCAACTCCCAGTTGTCTTTTTGCCTTCCTACGAGAGTCCCCCAGCATGGATAGCCCCGCAGGAGcgTATCCACCATCCTGACTACAACAATGAGCTGACCCAGTTCCTGCCACGCACCATTGTGTTGAAGAAACCTCCGGGGGCACAGTTAGGCTTCAACATCCGTGGGGGCAAGGCCTCTCAGCTGGGCATCTTCATCTCcaagGTGGTCCCAGATTCGGACGCCCACAGAGCAGAGCTCCAGGAGGGAGATCAGGTGCTGTCTGTCAATGAAGTGGACTTCCAGGACATAGAGCACTCGAGGGCTGTTGAGATTCTGAAGACTGCCAGAGAGATTCTGATGAGGGTGCGCTTCTTTCCCTACAACTACCAGAGACAGAAGGAAAGGACTGTGCACTAGGTGGCAGACGAGTTCCccgggagagagtgtgtgaACTACAGCCCCTGTCCTCCGTTTCAACCTAAGGATGAACGACCGCATGACAAACTGGATCCATTCACATTTACACCCCAGAACCACGTAAAGACAATGCATTCCCCCTCCGCATACTAAACGATGCACACTGCTTCAGATGCTGAAAGGATGTTGTTATATCAGGTGTTCACTCACTTACACAGTGAGTCATGCCCTGAAGACACGACATAGAGTAATGTATATTATTTACATACCATAATGCTCCAGGTCCCTAAAAgatagggtcctgaaaaggggtttctgtttttgctgagtttatagaCATACACAcgcttcggaaagtattcagaccccttgactttttccacattttacgttagccttattctaaaattacattgtttttaaaaaattgttgcctttatatttttgttcagtgtatttataTACATTTATACACAGTTTAATGATATTCCAAAAAACATTATATTGGACCGAGGACCTGATAATGCCTTGATACTATAAAAGATGAAGTTCATTTAATATGAAATGTTTCCATTATCTAAGATAACATTTTTCCAGGCTAGCTATTACACAAAAAAACTGCAGAACTATTATTAACAAATTATATTTGACATAACATGTCGACTATTAAGGTGCCAACATCCTTCATTCAAACATGGCGACACCATAATCTCATAAATTAATACTTGCCTTGTATGAAGCTCAATACATTAAACAAAATCACATTGTTTCATGTGCCGTAGTTTAGGATCCGTCACTTATAAAATGTCAGCACGGAATGAGTTCCAACTCTGTTTTTACATGTCAAAATAGATTAGATGGTGTAAATAAATCACTCGTCCATTAATGACCCTAAAGACGGAGTCAGGATAGTAGAACCTGTTTTCACTGTGTCAACTCTATCTTCTGTCCTGTGACCCACTTCACAGATCATGCTCTTGTAAAACACTAAATAAAACACGTCTAAACTCTCAA

Function

symbol description
pdzd11 Predicted to enable protein C-terminus binding activity. Predicted to be involved in maintenance of epithelial cell apical/basal polarity; neurotransmitter secretion; and protein localization to basolateral plasma membrane. Predicted to be located in cytosol. Predicted to be active in basolateral plasma membrane; cell-cell junction; and synapse. Orthologous to human PDZD11 (PDZ domain containing 11).

NR:

description
PREDICTED: PDZ domain-containing protein 11 isoform X2

GO: NA

KEGG:

id description
K24061 PDZD11; PDZ domain-containing protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583874.2 False 1828 mRNA 0.42 6 29848942 29853355
XM_021583876.2 False 1754 mRNA 0.41 7 29848942 29853355
XM_021583873.2 False 1630 mRNA 0.42 6 29848942 29853435
XM_021583875.2 True 1556 mRNA 0.42 7 29848942 29853435

Neighbor

gene id symbol gene type direction distance location
LOC110504957 LOC106611739 coding downstream 54754 29762841 ~ 29794188 (-)
LOC110504956 LOC106611738 coding downstream 97455 29747442 ~ 29751487 (-)
LOC110504954 LOC106611736 coding downstream 133085 29714139 ~ 29715857 (-)
LOC110504953 LOC106611735 coding downstream 239719 29536330 ~ 29609223 (-)
mcf2a LOC106611731 coding downstream 316615 29501548 ~ 29532327 (-)
LOC110504969 LOC106611747 coding upstream 379632 30233067 ~ 30256177 (-)
LOC110504972 NA coding upstream 416554 30269989 ~ 30279397 (-)
LOC110504974 LOC106611751 coding upstream 487692 30341127 ~ 30347505 (-)
LOC110504977 LOC106611754 coding upstream 555687 30409122 ~ 30415313 (-)
LOC110504978 fbln4 coding upstream 591094 30444529 ~ 30458967 (-)
G2270073 NA non-coding downstream 10238 29834004 ~ 29838704 (-)
G2270109 LOC106611797 non-coding downstream 23190 29820333 ~ 29825752 (-)
G2270106 NA non-coding downstream 31466 29817152 ~ 29817476 (-)
G2270103 NA non-coding downstream 35546 29813032 ~ 29813396 (-)
G2270098 NA non-coding downstream 39097 29809601 ~ 29809845 (-)
G2270144 NA non-coding upstream 55777 29909212 ~ 29915503 (-)
G2270160 NA non-coding upstream 64472 29917907 ~ 29918500 (-)
G2270163 NA non-coding upstream 71450 29924885 ~ 29925407 (-)
G2270165 NA non-coding upstream 75128 29928563 ~ 29928799 (-)
G2270167 NA non-coding upstream 77250 29930685 ~ 29930961 (-)
G2269291 NA other downstream 1213643 28634930 ~ 28635299 (-)
G2269277 NA other downstream 1242154 28606400 ~ 28606788 (-)
LOC110504930 LOC106611712 other downstream 1513989 28328943 ~ 28358459 (-)
G2269004 NA other downstream 1796255 28051204 ~ 28052687 (-)
LOC118946021 LOC106611696 other downstream 1896358 27828431 ~ 27952655 (-)
G2270186 NA other upstream 216943 30070378 ~ 30072129 (-)
G2270673 LOC106611749 other upstream 430298 30283733 ~ 30319917 (-)
LOC110504988 LOC106515624 other upstream 714934 30566629 ~ 30575299 (-)
LOC110505004 LOC102314576 other upstream 1318813 31172148 ~ 31175109 (-)
G2272324 NA other upstream 2399948 32253383 ~ 32253938 (-)

Expression


Co-expression Network