LOC110504968 (LOC106611745)


Basic Information

Item Value
gene id LOC110504968
gene name LOC106611745
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30224956 ~ 30230188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583883.2
CGTCATGCTGGCAGTTAAGAAGACGTCATGAGCGTCTTACTACCCAACATGGCGGACTTTGATACAATCTATGAGTTGGACGAGGACGATGAACGTGTAGTGAGTGAAGAACACCTTGTTAGATATTGCTCAGAACCTGTGATTATGCGAGGGGCCGGGCACATCACAGTGTTTGGATTGAGCAACAAATTTGACACTGAGTTTCCCTCAGTTCTCACGGGAAAGGTGGCTCCAGAGGAGTTTAAAACCAGCATCAGCAGAGTGAACACTTGCTTGAAGAAGACGTTGCCTGTCAATgggaagtggcttctttgcgGCTGCCTGTGCTGTTGCTGTACGGTGGGCTTCAGTCTGTGGCCCGTTATATGCCTCAACAAGAGAGCGAGAAGATCTATTCAGAAGTTGTTAGAATGGGAAAACAACCAGTTATATCACAAGCTATTTCCATCTGACATAGTGGACAGAGGCTGACCAGACCTAAAGATCAGCAGTAAAAGGCATGTTAATTTAGTTTTGTCACGGAACAATGAGTGACAGCTAGTAACTGAGCAGAAGAATGAAGGAAGCTCTTCAGGGTGTCTGGCCACTACCTGACCCCAGCCAGACATGGTTTGAAGCGATCCTAAATTCCCCTCACACTCAGATTTGCTAACCAGACGggatgtgggtgggtgggt
>XM_036970193.1
CGTCATGCTGGCAGTTAAGAAGACGTCATGAGCGTCTTACTACCCAACATGGCGGACTTTGATACAATCTATGAGTTGGACGAGGACGATGAACGTGTAGTGAGTGAAGAACACCTTGTTAGATATTGCTCAGAACCTGTGATTATGCGAGGGGCCGGGCACATCACAGTGTTTGGATTGAGCAACAAATTTGACACTGAGTTTCCCTCAGTTCTCACGGGAAAGGTGGCTCCAGAGGAGTTTAAAACCAGCATCAGCAGAGTGAACACTTGCTTGAAGAAGACGTTGCCTGTCAATgggaagtggcttctttgcgGCTGCCTGTGCTGTTGCTGTACGGTGGGCTTCAGTCTGTGGCCCGTTATATGCCTCAACAAGAGAGCGAGAAGATCTATTCAGAAGTTGTTAGAATGGGAAAACAACCAGTTATATCACAAGTGGACAGAGGCTGACCAGACCTAAAGATCAGCAGTAAAAGGCATGTTAATTTAGTTTTGTCACGGAACAATGAGTGACAGCTAGTAACTGAGCAGAAGAATGAAGGAAGCTCTTCAGGGTGTCTGGCCACTACCTGACCCCAGCCAGACATGGTTTGAAGCGATCCTAAATTCCCCTCACACTCAGATTTGCTAACCAGACGggatgtgggtgggtgggt
>XM_021583882.2
TCATGCTGGCAGTTAAGAAGACGTCATGAGCGTCTTACTACCCAACATGGCGGACTTTGATACAATCTATGAGTTGGACGAGGACGATGAACGTGTAGTGAGTGAAGAACACCTTGTTAGATATTGCTCAGAACCTGTGATTATGCGAGGGGCCGGGCACATCACAGTGTTTGGATTGAGCAACAAATTTGACACTGAGTTTCCCTCAGTTCTCACGGGAAAGGTGGCTCCAGAGGAGTTTAAAACCAGCATCAGCAGAGTGAACACTTGCTTGAAGAAGACGTTGCCTGTCAATgggaagtggcttctttgcgGCTGCCTGTGCTGTTGCTGTACGGTGGGCTTCAGTCTGTGGCCCGTTATATGCCTCAACAAGAGAGCGAGAAGATCTATTCAGAAGTTGTTAGAATGGGAAAACAACCAGTTATATCACAAGCTGGGCCTGCACTGGAAGCTCAGCAAAAGGAAATGTGaaagcagcaatatgatggaaTACGTAATTCTTATAGAATTCTTACCCAAATATCCTATATTCCGACCAGACTGAGCTGAGGAGGCTGTTGGGAGACCTGCAGTGTGGCCCTTGACTCCTATCCTTAGTGCCTTGTATAAATGTTGGAATGAGGGTCTGCACCTGTGTCTTGGGGTGTCCCTTACATCTCCCGGTACCTTGTACATTAGAAATTGCAACACTGTCACTTTGCTTTAGAGCAGATTTTGCACATTTCCTGATGAAGTAGAACAATGCTCTCTTTGTTGCACACTAATACTTTGCTTTTGTTACATATATGACAACAAGTGATTGAAAAAATAACACTGTTGAAAAGTGCATTTAGCCCAAAGAGCCATCATCAATTGAGTCCATGTATCATATCATTATTGCTTTGGAAAAACATGTGACACCtcctagagcaggggtgtcaaacctACGACCTGTGGGCCGGAGCATTTTTACAACGTTGTTGTAATTATAATTTTTGGACATTTGAAATTAGGAAAAACAAATGGAAACTGCAGTAAAGATAATAGACCTACAtatatagtctcttcactctgtccagctttcTAGCAGTTATCGAAACGAAAGCTAGACAGTCCGGGAGCATTGAAACAATTTTTTGCCGATTTTGATGGCGAGGAAGACCGAATGCGGCCCGCGGGGCAAAATGAATTTGACACCACTTATCCTAGAGCATCCTTGCCTTATGTAAAACAAACAATTTTATTTATAAGACAGGAGGAGACAAACATTTTGTAGCTCAGCAAGTTCAAATGTTGGTTATTTCCCTCAAATCAATTGGTCTCTGTGACAAAAAGTAGATGGGATGCTTGGATTTGCCAAACATACGGTGTAAGTTTGcgtcatgttttttttctctctctcatttcagaAATGACCCTTTTTACAGGGAACTTAAAAAATAAACAACCTGTAAATATGTTAGTATAAACTGTAGGCCTACAGTGGTATGCTGTTTACATTGTTATTTAGATCTTTGATTTGTTTTGCCAAGATAATGCTATACCATAGTTTTGTTTATGAAAGATGTCTCTTTCCAGTTTATATGGACCTGTTTACTTAGTAAGCCATATCATTTACAATGTATGTGATGCCAGAGGTAGGATTGAAAATTGCACTTGAGCTTATCAAAATGTCAGGATTTCAGAGAATGATTTCAAACTGAGGTTTTTAATCATTTTACAATGACACTAGTGATGCATGTTATTTGTGACTTTGCCAACTAAAAATAGTGTCATCCATTTCAATGTGAGATGGCTACTTGTCTTTATGATGTACTGTTGGAAACAGACTCCAACTTGGCACCTCCATGTCTCTTGTTTTTTTTGCCAAACTTTTTATTGCAGCTTTGACTTTGTTCCTTTTTATAGTTTTTATTTTCCTATACTGTGTTTTGTCTTTCTGTTAGTTGTTAAAAACCATGTGCAacctacagtacattacatattGAGATAAACGTTTCCTTTGTTTTTCATTTTGTACAGAGTTGTCTCATTCACTTGTAGCTGAGAGTTTTGCTGCATTATAGTGCCTCTGGAATGGTAGATGAACCGCAGTCAGAGAAGTGGTGTGGTTGTGAAGACTGACATCTGCTCACTTGTATTGTGGAGAGCCCTGGCCCTCTTCCCACTATTGGCCCTGTTACAGAGTACTTGTAAATGTTTGTCATGACAACTCAATCCCTATGGAAAGCTAAAATATATGGTTGATTTTGAA

Function

NR:

description
cysteine-rich hydrophobic domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583883.2 False 677 mRNA 0.48 5 30224956 30228155
XM_036970193.1 False 658 mRNA 0.48 5 30224956 30228155
XM_021583882.2 True 2236 mRNA 0.40 6 30224958 30230188

Neighbor

gene id symbol gene type direction distance location
cdx1 cdx1 coding upstream 1538 30219930 ~ 30223418 (+)
LOC100136647 LOC106611743 coding upstream 19268 30115525 ~ 30205688 (+)
LOC110504964 LOC106611741 coding upstream 155753 29888089 ~ 30069203 (+)
LOC110504963 LOC106611742 coding upstream 337445 29872871 ~ 29887511 (+)
LOC110504959 LOC106611740 coding upstream 377108 29838862 ~ 29847848 (+)
LOC110504970 LOC106611748 coding downstream 42089 30272277 ~ 30282447 (+)
LOC110504971 LOC106611749 coding downstream 53511 30283699 ~ 30286467 (+)
LOC110504973 LOC106611750 coding downstream 72400 30302588 ~ 30319039 (+)
LOC110504976 mrpl11 coding downstream 91635 30321823 ~ 30383240 (+)
LOC110504981 LOC106611758 coding downstream 246494 30476682 ~ 30479893 (+)
G2270382 NA non-coding upstream 8752 30215906 ~ 30216204 (+)
G2270374 NA non-coding upstream 12609 30212137 ~ 30212347 (+)
G2270364 NA non-coding upstream 16330 30208386 ~ 30208626 (+)
G2270307 NA non-coding upstream 22063 30201336 ~ 30202893 (+)
G2270258 NA non-coding upstream 116198 30108530 ~ 30108758 (+)
G2270388 NA non-coding downstream 1585 30231773 ~ 30231984 (+)
G2270407 NA non-coding downstream 33357 30263545 ~ 30263896 (+)
G2270478 NA non-coding downstream 152425 30382613 ~ 30427407 (+)
G2270553 NA non-coding downstream 294480 30524668 ~ 30524958 (+)
G2268400 LOC106611722 other upstream 1326877 28896755 ~ 28898079 (+)
G2268340 NA other upstream 1457227 28766877 ~ 28767729 (+)
G2266826 NA other upstream 3289067 26934720 ~ 26935889 (+)
G2266668 LOC106611853 other upstream 3604008 26588592 ~ 26620948 (+)
LOC110504416 diaph1 other upstream 3852473 26298775 ~ 26483992 (+)
G2271027 NA other downstream 946702 31176890 ~ 31181107 (+)
G2272912 LOC106611792 other downstream 2633248 32863436 ~ 32866226 (+)
LOC110505056 LOC105028844 other downstream 3185902 33328263 ~ 33421963 (+)
LOC110505080 LOC106611630 other downstream 3971895 34202011 ~ 34207415 (+)
G2274048 NA other downstream 4001807 34231995 ~ 34232604 (+)

Expression


Co-expression Network