LOC110504969 (LOC106611747)


Basic Information

Item Value
gene id LOC110504969
gene name LOC106611747
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30233067 ~ 30256177 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583885.2
ggctgtgtgtgtgtttgtgtgtgtgtgtgtacaccagcCTCTGTGTAATTGGTCAGCCCTCGGTTTGGTCTCCGAGTGTTTTGCCTGAGCTAGTGCGACATCAGCAGTTTTagtccccctccactcctcctcctctcccccctcttcaggAATCGACGGAGGCAGGCTGaacgcctctcctcctctctgccgaGCTCCCCTGTGCCTAGTCACACCACTCCCCCTCagtttgccacacacacacacacagatccactGACTGTGTGCCGGGGATGTGGAGCTCTGGTTTCAGTCAGGCTGCAGGCAGCCAGCACAGCTGTTGGGTTTGAGGTTCTCGTTTGCATGCAGTGGCTGCCGACCGGCTGGGGTTCTTGACAACGCTGATATCAGCTTCTCAGAAATCCAGGATGAAGACATGAGGCGGAGAGGACGAACAGTGGATCAGGGTTTCAACTTCACCCCTTTCAATGGATTCAGTCTGGGATGTTTGCCCCCTTATGAAATAATCTAAGCAGGCACTTCCTTTCTGGGATCAAGAGTGAGTGCGGGAACAGAGAAAGTTGGACAGTGGAACAAAGGAAGTTGAACTTGCTAGATAGCTATTCCAGCCAGTGGCCATGACGGAGCCCAATGTCcccaacagtagcagcagcatcagcAGTGCTGGCCTGGCATGGGCAAAGATGTGTAAGGACTGTGGCCAGCAGCATGAAGGGGGCCAGGAGAACCACTTGTATGAGTACCAGGATGAGGTAGATGATGAGCTGGTGTGCCACATCTGTCTGCAGCCCCTGCTGCGGCCCATGGACACGCCGTGCGGACACACTTACTGCTTCCAGTGCCTCAGCAGCTTCCTGAAGGAGCAGGACTTCTGTCCCGTGGACCGCCAGCGGCTGCAGCTGCACCAGTGCCGGCCCTCCAGCCTGCTGGTCAGGAACCTGCTGGACAAGCTGACCGTGCTCTGCCCACACCACGTTGAGTGCCAGCAGCAGATGCAGCGCTGCGAGCTGCAGCCCCATCTGCACAACAGatgTCCTGTTTTCAGAAGGCTGAAGGAGGAggcggagaggaggaagagacccCACCGGAAAGCCCTTAAGGGGAACAGGGGCGAGGGGGAGTTGGATGCTGATGCTAAACACACCCCTACGATGACCCGCACCCCCACCCGGGGTGTCCTGCCAGAGCCTGGCCTCATCAACCCCGCCTTCGAAGAGAGCGAGGAGGAGACCCCCCTGCGGTCCAGCCTGGTGGCCGAGACCAACGTGGTGGAGATGTTTCGGGAGCAGCAGGAAGAGGAGTTGGGCCTGCGTATCGTGGGAGGAAAGGACACGCCCCTGGGGAACATAGTAATCCAGGAGATCATCCGTGACTCATTGGCAGGCCATGACGGCAGGCTGGCCCCAGGGGACCACATTCTGGAGGTGAATGGTGTCAGCCTAGCCTCTATCCCACACGGCCGGGCCATCTCCGTGCTGCGGCGGCCATGTCCTTTGCTCAGACTCATCGTCATGCAGGAGAAGGGCTTCAACCCCCGTCACCCACAACGTCCTGGCCTCGAGCAccacccacccccctcccccaacaTGGCCACTGCCTCCCCTTCCTCTCACAGTCCCCACGGCACCGCCCACAGCCAGGGCACGGTGATCCAGGTGACGCTGGTAAAGAGGGACCGCTCGGATCCGCTGGGTATCAAACTGATCCGCAAGTCGGACGAGACTGGGATCTTCATTCTGGACCTGCTGGCGGGGGGGCTGGCGGCCAAGGACGGGAAACTATGTAACAATGACAAGGTGCTGGCCATCAACGGGCAGGACCTGAGACACGGCACCCCAGAGAGCGCAGCACAGATCATACAGgccAGTGAGGTGCGGGTGAACTTTGTGGTGATGAGGCAGCCGGAGCCCCAGGAGGAGGGGGGCAGCGGTGGAGAGGGGCAGGGCCGAGTGGCCAGGAGGGCTCCAGAACCCCAGTACTTCAGACGGCCCTCCACCTACATGAAGGATCCTCCAGGGGGCTTCTCTAGCCAGGAGAAGACAGTGAGTCTGAAGAAGGAACCGAGGCTCTCCCTAGGCATCACCATTGCTGGGGGGAGGGACTGCCGCAGCCGCCTGCCCATCTACATCACCAGTGTCCAGCCTGTCGGCTGCCTGCACCGAGACGGCACTATCAAAACAGGGGATGTCCTGATGAGCATCAATGGCGTGGATCTGACCCAGCTGACCTACAATGAGGCGGTGTCAGTGCTGAAGGCCCAGACGGCCCACTCCCAGGTAGTCCTCAGAGTCATCCAGACCATCTCAGAGGAGcctgagggggagggggaggctggCAAAGAGGAAATGGAGTCTGTGGAGAACCTAAGGGAGGATGATGTCAACTGGGCCCCGCTGTGGACCCACTGGCTGGGTCTGCCAAGTCACATGCACTGGTGCCGTAACATCGTGTTGCTGAAGACCAATCAGGAGAGCTGGGGCTTCAGCATTGTGGGTGGCTACGAGGAGAGCCACGGACAGCAGCCCTTCTTCATCAAGACCATCGTGCCTGGTACACCTGCCCACTTCGACGGACGCCTCAAGTGTGGTGATGAGATTGTAGCTGTGAACGGAGCCACCACGGTGGGCATGAACAACTCGTCCCTCATCCCCATGCTCAAACTGCAGAAGAATAAAGTTACACTGACTGTGGTGTCCTGGCCGGGGAGCCTGGtgtagacgcacacacacacacagacacacacaccctgccctgCTCAGTTCATGTCTCCACTGAGTCTCTTGTCATCTCTGCACACAACACCCTAGAATCTCATTGGTGACATTCTTAGAAGGTTTGTTGTATTGTTATTTTCACGACATAATCTCTTCTGGATTGTAATATAAATTGTCAATTTGCACATTGCCCTAGCTGACTAGTGGGACTGAATTACACATGAGTTGATTCACTGCGTTGATTATTGTTGTTGTCGTTACTCAAAAGGGCAGTTGATGTGTGATTGTGAACAAATTGGGATAATCAGGGTGGAAGATGAATTGACAATCAATGAACTATGTTTCATGGTAAACTGGAAGGATCTTTATCGTTTGGAAGAATAGTTTTTACCCTGTGTCTTGGACGCTTTATGCATTTTTGTTTTCAGCAGATTTGACGTACTTGTTCAATACTCATTTATGTTTGTTTTCCCACATTAgttaatgatgatttgaaaaaatgcTACTGGCCTATTTGTATTAGCCAAAACTGGGATGTATATGTAGATCTCAAATTCCATGTGAAAAGGGCCTAATTTAGGCTAGGAAATATATGTATCCCTATAATTTCACAGTTAATGAAGAACATGGATTTAATGTAACACATGTATTAGGAAAGGGTGACCGTTGACAATGTAGAAAGATGCCAGTCACACATGTACCCATCCTCTCCAACACCTTTACCTTTTGTACTATTTAGAGTTGAACAGATACTGTGTTGTTTTATCCATATATAAGGACATTCTAGTGGCTGCAGATTTTTAATATTGATTTAGTTCCTAACTGTACCGTAGTCATCTCTTCAATTTCTGTGCAATGCATCATACCAAATGTCTCTGATTAATGTGGGTGCCTTGTACATGTTAAAGGACAAATCAAAGTTTGAACACTTGCCTTAATTGCCACAACCAAAAAACATGTTCTTTGTTCTTTAAGCTCCCACCTCTCATTTTCTTACCAATGAGAACGTGGAGGATCTGTTCATTATTATCCAGCATATTGTAGTTGTAATGTTCACAAGAGGAGGAGACCAGAGCTGCTGGCCTTAGTTGGAGCATGAGATTCACTTCAACTGTTCTTTTCAGGGTTAAATAAAAACACTAGAGGTCTCTCATTGAATCCTGAGAATGTTATGGGAGCCCTCTGTATAGTTTCATATTTCAGTTAAGGGAAATATAGGCATTATATATTGTGTAAATGGACCATCCCCTGTTTTGTAATGTTCTAAAACCTCAATAATATGTGTACTGT
>XM_021583886.2
GAAACATAAAACATGAGGGAGTGGGATGTCTCGCTGACTTTTCCATCTCTGGCCTGTACAACCAACAACACCTGAGGCGGCGCCCTGTGAAGAATGATCTGTACTATTCACTCAGAAATATAACGTATAGGATTATTGTAATCGTTTCTAGCTTTATTATCGGAGTTTCTCGAGGCTATAGGCTACTTTAGTCATAACACGATTTCACGACCGTCTTTGTTTTATTACTTCCGGGAAAAAGCCCTTCACACAGAAATCCAGGATGAAGACATGAGGCGGAGAGGACGAACAGTGGATCAGGGTTTCAACTTCACCCCTTTCAATGGATTCAGTCTGGGATGTTTGCCCCCTTATGAAATAATCTAAGCAGGCACTTCCTTTCTGGGATCAAGAGTGAGTGCGGGAACAGAGAAAGTTGGACAGTGGAACAAAGGAAGTTGAACTTGCTAGATAGCTATTCCAGCCAGTGGCCATGACGGAGCCCAATGTCcccaacagtagcagcagcatcagcAGTGCTGGCCTGGCATGGGCAAAGATGTGTAAGGACTGTGGCCAGCAGCATGAAGGGGGCCAGGAGAACCACTTGTATGAGTACCAGGATGAGGTAGATGATGAGCTGGTGTGCCACATCTGTCTGCAGCCCCTGCTGCGGCCCATGGACACGCCGTGCGGACACACTTACTGCTTCCAGTGCCTCAGCAGCTTCCTGAAGGAGCAGGACTTCTGTCCCGTGGACCGCCAGCGGCTGCAGCTGCACCAGTGCCGGCCCTCCAGCCTGCTGGTCAGGAACCTGCTGGACAAGCTGACCGTGCTCTGCCCACACCACGTTGAGTGCCAGCAGCAGATGCAGCGCTGCGAGCTGCAGCCCCATCTGCACAACAGatgTCCTGTTTTCAGAAGGCTGAAGGAGGAggcggagaggaggaagagacccCACCGGAAAGCCCTTAAGGGGAACAGGGGCGAGGGGGAGTTGGATGCTGATGCTAAACACACCCCTACGATGACCCGCACCCCCACCCGGGGTGTCCTGCCAGAGCCTGGCCTCATCAACCCCGCCTTCGAAGAGAGCGAGGAGGAGACCCCCCTGCGGTCCAGCCTGGTGGCCGAGACCAACGTGGTGGAGATGTTTCGGGAGCAGCAGGAAGAGGAGTTGGGCCTGCGTATCGTGGGAGGAAAGGACACGCCCCTGGGGAACATAGTAATCCAGGAGATCATCCGTGACTCATTGGCAGGCCATGACGGCAGGCTGGCCCCAGGGGACCACATTCTGGAGGTGAATGGTGTCAGCCTAGCCTCTATCCCACACGGCCGGGCCATCTCCGTGCTGCGGCGGCCATGTCCTTTGCTCAGACTCATCGTCATGCAGGAGAAGGGCTTCAACCCCCGTCACCCACAACGTCCTGGCCTCGAGCAccacccacccccctcccccaacaTGGCCACTGCCTCCCCTTCCTCTCACAGTCCCCACGGCACCGCCCACAGCCAGGGCACGGTGATCCAGGTGACGCTGGTAAAGAGGGACCGCTCGGATCCGCTGGGTATCAAACTGATCCGCAAGTCGGACGAGACTGGGATCTTCATTCTGGACCTGCTGGCGGGGGGGCTGGCGGCCAAGGACGGGAAACTATGTAACAATGACAAGGTGCTGGCCATCAACGGGCAGGACCTGAGACACGGCACCCCAGAGAGCGCAGCACAGATCATACAGgccAGTGAGGTGCGGGTGAACTTTGTGGTGATGAGGCAGCCGGAGCCCCAGGAGGAGGGGGGCAGCGGTGGAGAGGGGCAGGGCCGAGTGGCCAGGAGGGCTCCAGAACCCCAGTACTTCAGACGGCCCTCCACCTACATGAAGGATCCTCCAGGGGGCTTCTCTAGCCAGGAGAAGACAGTGAGTCTGAAGAAGGAACCGAGGCTCTCCCTAGGCATCACCATTGCTGGGGGGAGGGACTGCCGCAGCCGCCTGCCCATCTACATCACCAGTGTCCAGCCTGTCGGCTGCCTGCACCGAGACGGCACTATCAAAACAGGGGATGTCCTGATGAGCATCAATGGCGTGGATCTGACCCAGCTGACCTACAATGAGGCGGTGTCAGTGCTGAAGGCCCAGACGGCCCACTCCCAGGTAGTCCTCAGAGTCATCCAGACCATCTCAGAGGAGcctgagggggagggggaggctggCAAAGAGGAAATGGAGTCTGTGGAGAACCTAAGGGAGGATGATGTCAACTGGGCCCCGCTGTGGACCCACTGGCTGGGTCTGCCAAGTCACATGCACTGGTGCCGTAACATCGTGTTGCTGAAGACCAATCAGGAGAGCTGGGGCTTCAGCATTGTGGGTGGCTACGAGGAGAGCCACGGACAGCAGCCCTTCTTCATCAAGACCATCGTGCCTGGTACACCTGCCCACTTCGACGGACGCCTCAAGTGTGGTGATGAGATTGTAGCTGTGAACGGAGCCACCACGGTGGGCATGAACAACTCGTCCCTCATCCCCATGCTCAAACTGCAGAAGAATAAAGTTACACTGACTGTGGTGTCCTGGCCGGGGAGCCTGGtgtagacgcacacacacacacagacacacacaccctgccctgCTCAGTTCATGTCTCCACTGAGTCTCTTGTCATCTCTGCACACAACACCCTAGAATCTCATTGGTGACATTCTTAGAAGGTTTGTTGTATTGTTATTTTCACGACATAATCTCTTCTGGATTGTAATATAAATTGTCAATTTGCACATTGCCCTAGCTGACTAGTGGGACTGAATTACACATGAGTTGATTCACTGCGTTGATTATTGTTGTTGTCGTTACTCAAAAGGGCAGTTGATGTGTGATTGTGAACAAATTGGGATAATCAGGGTGGAAGATGAATTGACAATCAATGAACTATGTTTCATGGTAAACTGGAAGGATCTTTATCGTTTGGAAGAATAGTTTTTACCCTGTGTCTTGGACGCTTTATGCATTTTTGTTTTCAGCAGATTTGACGTACTTGTTCAATACTCATTTATGTTTGTTTTCCCACATTAgttaatgatgatttgaaaaaatgcTACTGGCCTATTTGTATTAGCCAAAACTGGGATGTATATGTAGATCTCAAATTCCATGTGAAAAGGGCCTAATTTAGGCTAGGAAATATATGTATCCCTATAATTTCACAGTTAATGAAGAACATGGATTTAATGTAACACATGTATTAGGAAAGGGTGACCGTTGACAATGTAGAAAGATGCCAGTCACACATGTACCCATCCTCTCCAACACCTTTACCTTTTGTACTATTTAGAGTTGAACAGATACTGTGTTGTTTTATCCATATATAAGGACATTCTAGTGGCTGCAGATTTTTAATATTGATTTAGTTCCTAACTGTACCGTAGTCATCTCTTCAATTTCTGTGCAATGCATCATACCAAATGTCTCTGATTAATGTGGGTGCCTTGTACATGTTAAAGGACAAATCAAAGTTTGAACACTTGCCTTAATTGCCACAACCAAAAAACATGTTCTTTGTTCTTTAAGCTCCCACCTCTCATTTTCTTACCAATGAGAACGTGGAGGATCTGTTCATTATTATCCAGCATATTGTAGTTGTAATGTTCACAAGAGGAGGAGACCAGAGCTGCTGGCCTTAGTTGGAGCATGAGATTCACTTCAACTGTTCTTTTCAGGGTTAAATAAAAACACTAGAGGTCTCTCATTGAATCCTGAGAATGTTATGGGAGCCCTCTGTATAGTTTCATATTTCAGTTAAGGGAAATATAGGCATTATATATTGTGTAAATGGACCATCCCCTGTTTTGTAATGTTCTAAAACCTCAATAATATGTGTACTGT

Function

NR:

description
ligand of Numb protein X 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583885.2 False 4004 mRNA 0.52 10 30233067 30249870
XM_021583886.2 True 3859 mRNA 0.51 10 30233067 30256177

Neighbor

gene id symbol gene type direction distance location
LOC110504962 pdzd11 coding downstream 379632 29848942 ~ 29853435 (-)
LOC110504957 LOC106611739 coding downstream 438879 29762841 ~ 29794188 (-)
LOC110504956 LOC106611738 coding downstream 481580 29747442 ~ 29751487 (-)
LOC110504954 LOC106611736 coding downstream 517210 29714139 ~ 29715857 (-)
LOC110504953 LOC106611735 coding downstream 623844 29536330 ~ 29609223 (-)
LOC110504972 NA coding upstream 13812 30269989 ~ 30279397 (-)
LOC110504974 LOC106611751 coding upstream 84950 30341127 ~ 30347505 (-)
LOC110504977 LOC106611754 coding upstream 152945 30409122 ~ 30415313 (-)
LOC110504978 fbln4 coding upstream 188352 30444529 ~ 30458967 (-)
LOC110504979 LOC106611755 coding upstream 204722 30460899 ~ 30474809 (-)
G2270377 NA non-coding downstream 19918 30212870 ~ 30213149 (-)
G2270311 LOC106611743 non-coding downstream 94827 30136554 ~ 30138240 (-)
G2270308 NA non-coding downstream 117699 30115163 ~ 30115368 (-)
G2270264 NA non-coding downstream 118479 30114269 ~ 30114588 (-)
G2270257 NA non-coding downstream 125299 30107451 ~ 30107768 (-)
G2270681 NA non-coding upstream 27048 30283225 ~ 30283439 (-)
G2270673 LOC106611749 non-coding upstream 27556 30283733 ~ 30319917 (-)
G2270793 NA non-coding upstream 171329 30427506 ~ 30427708 (-)
G2270807 NA non-coding upstream 195377 30451554 ~ 30452154 (-)
G2270799 NA non-coding upstream 237838 30494015 ~ 30494576 (-)
G2270186 NA other downstream 160938 30070378 ~ 30072129 (-)
G2269291 NA other downstream 1597768 28634930 ~ 28635299 (-)
G2269277 NA other downstream 1626279 28606400 ~ 28606788 (-)
LOC110504930 LOC106611712 other downstream 1898114 28328943 ~ 28358459 (-)
G2269004 NA other downstream 2180380 28051204 ~ 28052687 (-)
LOC110504988 LOC106515624 other upstream 312192 30566629 ~ 30575299 (-)
LOC110505004 LOC102314576 other upstream 916071 31172148 ~ 31175109 (-)
G2272324 NA other upstream 1997206 32253383 ~ 32253938 (-)
LOC110505054 LOC106611652 other upstream 3055739 33308270 ~ 33313952 (-)

Expression


Co-expression Network