LOC110504977 (LOC106611754)


Basic Information

Item Value
gene id LOC110504977
gene name LOC106611754
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30409122 ~ 30415313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583893.2
TCTGGGCGAGAGACGGCTACTACAGCCGCCGAATCACTCACACTCTGAACCGGTGGAAAGCCATCCAGCGGCTAGCCAGCAACCTTACTGGACGCTGTGGCGGAACCGAAGAGGAAAAAAGAACGGATAGGAGAAGGTCTGAAGCCTTACTCTGGAACAAGCTGAGATGAAATTCCAATAGTAAAACGACAAGGTTATTACTACTAGCCTTTCTCTGACACCTCATCTTGGGAGAAAGAGACTCAGACCTCAATATTCAGTTGAGTTTCACCTTCAAATCCAGGGAATTTAGTCAACCACTATAACAGGCTACAATGTATCGATCAACGAAGGGCGCGTCGAAGGCTCGAAGGGACCAAATCAACGCGGAGATTCGGAACCTGAAGGACTTGCTTCCCATATCCGATGCGGAAAAGGCACGGCTCTCATACCTACATATCATGTCCCTTGCCAGCATGTACACCAGAAAATCGGTCTTCTTCTCTCAAGAATCGGGATCCGCTGGCAGTCTCGAGGAAAGCGCGAGGTTCCTGTCTTTCCACGAGCTGTCAGAGCTGGTGCAGGAGCTACCCGGgttcctgctcctgctgactGGGGAAGGCAAGCTGCTCTACCTGTCAGACAGCGTCTCCGAGCACCTCGGCCACTCCATGGTGGATCTGGTTGCCCAGGGTGACAGTGTGTATGATATCATTGACCCTACTGACCACTTCATCATGAGGACCAACCTAGCTCCTCCTACATCACCTGACACAGaTCGTCTATTCCGTTGTCGTTTCAACACTTCCAAGTCGGTGCGCAGGCAGAGTGCTGGGAACAAGCTGGTTCTGGTCCGGGcacgctgccctttcccacccTCCTCTTCTACCACCCCTAGCTCCTACTGGACATCCAATCCCGTCTGGATGTGCTTCTGTTCGCCTCTGGAGGCCGTCCCCACCCGCTCTGGTCCTGGGGGGGACCAAGTTCCAGCTCTGATCCCTCCTGCGGCTGAGAACAACTTCTTCCTAGCCTCGTTCCAGTCTCAACACAGCCGAGACATGAGGCTCCAGAATGCACAGGACAGTGTCAGTGTTTACCTTGGCCTTGATGTGTCAGCCCTGAGGTCTCGCTCCTGGTACAGCCTCCTCCACCCACAGGACCTGTCACACGCCTCCACTCAGCACTGCAGCCTGTtgagagagggaggagagggtagatCTGAGATGGTGGTACGGGTGGAGTCTGCAGACCACTCTTGGGTCTGGCTCTACATGGTACTGCAGCTGGAGGCAGGAGACAGCCCCATCAGCAGCAACAACTACATCATCAGtgaGGCGGAGGCGTGGTCAGTGAGACAGCAGCTGAGCACAGAGCAGACCCAGCTGACCCTGGTACTGAGTACCAGTACCTCCCGCCAGGACAGCCTGAGCCTGTCCAGCCCAGACCAAGTCTTCACCCCAGGCAGCAGTGGCCTCTCAGCCCAGTCCTTCGACTTCAGCATGACTGTGTCCAGCAGTGTGGGCTCCTCAGACGAGACAGGGGGCGCCACCACTGAGCCCATGCAGGTGGAGGGCGACCCTCGCTCTAGTATTTCCTCTATTGAGGAGGAGAGCTTCTTCCAGCAGCAGCAGATGCCTGCCCCTGTCCAAACCCGCTCTGCTGCCTCCTCCCCCACCCCAGTTACCGTTGCCACGGTAGCAGACCTGGACTTCCTCACTCAGAACATTCTCCTGCCCCCCTCCTTCCAGCTCGAGCCCCCGCTGCCCGCCCTCCCCCTTCCACTCCCCCCAGTGCCCACCTCCCAGGAGCAGCAGACCAAAGAGTTTGTGTGTACGCCCCCCTACACACCCCAGCTGGGCGGGGGCAGCTTCCTGTTCGGCGAGCCCCTCTTTAGCTTCGACCCCACAGGCACCACcacaccccctccctccaccaccacagctACAGCCACCACCTCCAtcgccccctccctctccccctctgccccaCCCACCACAGCCTCCAGCCCTgttcccccctcctccctgtgCCTCACTGGCCCCTCCACTGACCTGTTCTTCCCTGCCGATCCCTGCAGTGGCTCTATTTATGAGAAGCTACCCCCCACTCCTGACAGCCCTCGGGATGGGGACTGCACAGTGATGACCTTGCCTGAGGTTCGGGGACCCCTGTATGTAGATGTCCCTTTAGGGCCCTTTCACTACCCCCTCGAGGGCCTCCTCACCCCAGAGGCCTCCCCCGGTAAACAGCCtggtctctctttcttctccctggacagagagagggataaggagagagcagagatcTCCCTCTTAGCTCAGCACATCAGCTCCTTAGCAGAGGGATTCTACCTGGATCCTCTCTTATCCAAACTATCCCCTCCTTCcatgtccccctcctcctcccctccccccccggCCCTCTCACCATCCGTAGCCACTGCTGGTGTTGACTCTATCCACATGCTGGGAGAGTTTTACCCCGTGAAAGTGTGGAGAGGCCTGGACTTCCCCGTATTCCAAGATGATGATGACTCTCTGTTTGAAGAGAGCATCTTAGAAGCCCTGCTCCAGgacttctccacccctccacccctctccccttCCATCCCCCCGCCATCTCCCCCCAACCCAGTGTGCTGGCACTCACCCTCCCACTTTGAGGGGGTCAGCCACTTCTGTAGCGTCCAATCGGCGCACTGTTACCCCACGGCAAGGTGCGGGGCGACATTGGCCAGCGAGGCCGGGGCGATGGCAGAATGGGAGGGGCTGGGGGAGGAGCCTATGGAGATTGAGGTGGCGTCATCACCTCTGTCCTCCTGTTCCTCCATCCCAGCATCCCCTCCCCTGCGACTCACTGCCTCCCCCGCCTCCGCCCCCTCCACGCCCGTCGCCCCCAACACGCCCGCCGTGCCTTGCGCCCAGTCCCTCCTGGAGGAGCTGGCCGCCCTGGAACCCATGTTTGGGGCAGGTGCCTCGATCGCCCCCGGCTTGGGGCAGCAACCTGAGTTGTATCAACTCCAGTGTCACCAGCCGCCACAGTGCTTCCACAAAGATGGGAGTGGAAGTGTTCCCCCGTTCTAAATAAGTCTGTGACTTACTTCATTAAGTATGGCATATTGTCATATTTCGTGGAGCTATTTTACTGAAAAGTAAAGATGATTTAagtgtataaatatatacataatgTATACTACTAAAGGACTTTATTTCCTACATGTCTACTGAGAACAAATATTgccttcatatttttgttcatttatttatttattcatgtatttctattttttttttttttttttaatcaaacaaTTTCACATTTACTTTCAACATTGTTGACATAATGGTGCAACATTTACCAACTGAATGTACCCATGACTGACTGAGTTTTGGGTCCATTTGGTGCCACAGCTTTTCTGTAACATAAGCTTCAGAGTGGATCAGTCAGAGACGTAACAAAACCTCTGACCTTGTAAAGCGCCGTTTAACTTCCAGACTGCATTTGTATTCACTCATAGTGAAAAACCTGTTGCGAACAAAAAAAAATGAGAATACCTTCTTTGATATTTCAATAGAGAAATAACTTAGAGCATTATTGCTTGTAATGCAGCAACGCAAACCCAAATCACAAATGTGGTGAAAGTCTATGTTTACAGAAATCTCTACTGACCTGGTACAACCACTGACAGTAGCTGACAAAAGGGGACCAGATTCCCCCTCTCACATCCTCAATATTCCGTTTACAGAGAGACACATAGTTCTACTCGGACCTTATTGTATTCCTCTCTTGTCATAGCTTGAAAGGCCAAACATATGAATACTGTAGTCAAACTAACCTAATACTTTGAGCTTTGAGTTTGCGGCtgaacatttgaaaacatttgacTTCATGTTATTTCTCCATTACGAACTTGTGTATCAATGTGATGGCGTGCAAAAGAAAAACAACAATACAAAATGTGTGAAGACATAGGTCTTGGAATGTCCACACGCAAGAACGCATGACGGAGGTTTCTGGCCTTTACCAGAAGGTGTTGCCGAATGGAAATCGTCTGGAAGTTACTCAACAACTGTGTGTGGTTCTGTTGTGTACAGGACCAGCACATTGTACATTAGACTCTGAATGTGGGCTCTTTAGGTCACCGTTCTCTTGGGCTTGGCTTCAAGGGCAGCTCTGCTGGATTTTCTTGCAGCATCAATATTTGCAATGCTGGCAGTTTATAGCGGCTCCTGTGTGCCTGGCATGGCCATGTCCTGCTGAACTCTGAACTCTATCTGAACTCTTTCTCTATGTCCATGAACCAATGGGCTGACAGTCACATCGTAGCTCTACTTGAGTTATGGTGTTGTGGGGCACAATACAGGCTATGTGAATGACTATATGATTCTTCTTTTTTGAGAGGGGTTAGACAAAAATGGAAgttttgttttaaaaaatgacCTGAAAATAGTGTGATGGGTTACTATTTCTATTCAGTTCCTCCTAAGCGACACGGGTTGAGAATGGTACTATTCCCATGGTGTCGACATGCTAACGTAGAGTTGTCTACGGTCAAGTAAAGGATTGATTCCTACGTTCTAGCTATTAAATGCTACGTTTAACATATGTGTAAGTATTATATTGTATGTGTTGAATTGACAAAGAAGAAACTGTTGATGTTCAATGCATAATGCATTGTGTCTGTGGATGTAGGCACATGCAATTTTTTTGAAGGATTGTACACATTTGTACATTTGTATAAATACATCAGTCTGTACATATCAGAGACATTTCTATTGTTTAAGATGGACTGTATACATGATGATATATTGAAGAATGGACATTGTGGATCAGTGTTCTCTTGTGTTGCTGAAAAGTGTATTTGGTTGTCAAACAAATGCATTTATATTAAAGTGCACTTAAAGCGG

Function

NR:

description
neuronal PAS domain-containing protein 4A-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583893.2 True 4889 mRNA 0.51 8 30409122 30415313

Neighbor

gene id symbol gene type direction distance location
LOC110504974 LOC106611751 coding downstream 61617 30341127 ~ 30347505 (-)
LOC110504972 NA coding downstream 129725 30269989 ~ 30279397 (-)
LOC110504969 LOC106611747 coding downstream 152945 30233067 ~ 30256177 (-)
LOC110504962 pdzd11 coding downstream 555687 29848942 ~ 29853435 (-)
LOC110504957 LOC106611739 coding downstream 614934 29762841 ~ 29794188 (-)
LOC110504978 fbln4 coding upstream 29216 30444529 ~ 30458967 (-)
LOC110504979 LOC106611755 coding upstream 45586 30460899 ~ 30474809 (-)
LOC110504980 fosl1 coding upstream 65220 30480533 ~ 30485003 (-)
LOC110504987 LOC106611762 coding upstream 111127 30526440 ~ 30532235 (-)
LOC110504988 LOC106515624 coding upstream 151316 30566629 ~ 30575299 (-)
G2270673 LOC106611749 non-coding downstream 122655 30283733 ~ 30319917 (-)
G2270681 NA non-coding downstream 125683 30283225 ~ 30283439 (-)
G2270377 NA non-coding downstream 195973 30212870 ~ 30213149 (-)
G2270311 LOC106611743 non-coding downstream 270882 30136554 ~ 30138240 (-)
G2270308 NA non-coding downstream 293754 30115163 ~ 30115368 (-)
G2270793 NA non-coding upstream 12193 30427506 ~ 30427708 (-)
G2270807 NA non-coding upstream 36241 30451554 ~ 30452154 (-)
G2270799 NA non-coding upstream 78702 30494015 ~ 30494576 (-)
G2270769 LOC106611761 non-coding upstream 101738 30517051 ~ 30524441 (-)
G2270840 NA non-coding upstream 124430 30539743 ~ 30540090 (-)
G2270186 NA other downstream 336993 30070378 ~ 30072129 (-)
G2269291 NA other downstream 1773823 28634930 ~ 28635299 (-)
G2269277 NA other downstream 1802334 28606400 ~ 28606788 (-)
LOC110504930 LOC106611712 other downstream 2074169 28328943 ~ 28358459 (-)
LOC110505004 LOC102314576 other upstream 756935 31172148 ~ 31175109 (-)
G2272324 NA other upstream 1838070 32253383 ~ 32253938 (-)
LOC110505054 LOC106611652 other upstream 2896603 33308270 ~ 33313952 (-)
LOC110505064 LOC106611642 other upstream 3283272 33693783 ~ 33765421 (-)

Expression


Co-expression Network