LOC110504978 (fbln4)


Basic Information

Item Value
gene id LOC110504978
gene name fbln4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30444529 ~ 30458967 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583894.2
ctgtccctctttcctctctgcctctttccttctctctctttctcgccctcCCCTGCATGCATTCAGCTGCTCCAGCTGTCGATCTGCCCACTCACTCTCTCAGGGCCATAGAGGCAGGAGCAGGACAGATAGAGGGACCACTTCTGCTCTCCACACTCCCACCACATCAGGGACCACCACCGCCAGGGGACTAGAACAGCACTACACGGACTCAAACCAGGGACCAGAAGATAACAGGAAGAAGACGAATTCACACAAAGGAAGAAGACTTGCCTaTACCGCTGCGCTGCTCTGAGCACCACAACAACCCGGCAGTTTCTCTCGTCCTGACCGGAGGCACCGCTACCTGTGTGACCCGCTGGCTGTGCCAgggtgtgtgtttacgtgtgtgatCCGGTCCTATCTGCCAGTCAGTCCGTGAGCATGCAGGGCGTGTGTGCGGCgatcctgtgtgtgtctgtgttcctcCGCAGTGCTATTTCACAGCCACCTACAGAAAGTGACACCTACACGGAATGCACAGATGGGTATCAATGGGATCCTCAGACTCAGCACTGCAAAGACATAAACGAGTGTGAGACCATTCCGGAGGCCTGTAAGGGGGAGATGAAGTGCTTCAACCACTACGGGGGCTACCTGTGCCTCCCCCGCTCTGCCTCAGTCATCCCAGCTCCAGACCCCCCCAGCCAGCCTGGGACCAACCTGGAGAGCACCGCCAGAGAGCCCTTCAACCCCTGTCCTCTGGGCTATGAGCCCCAGGGAGACAGCTGTGTGGATGTGAatgagtgtgagagagatgaACACGACTGCCAGCCCAGCCAGCAGTGCATCAACACACCGGGAGCCTTTACCTGCCAGTGTCCTGAGGGTTACCGTAAGGTTGGCACCGAGTGCATCGACATTGACGAGTGCAGATACAGGTACTGTCAGCATCGCTGTGTCAACGTCCCCGGCTCCTTCTCCTGTCAGTGTGAACCAGGCTTCCAGCTGGCCGGCAACAACCGCTCCTGTATTGaTGTGAATGAGTGTGACATGGGCGCCCCCTGTCAGCAGCGGTGTTATAACACCTACGGTACCTTCCTCTGTCGCTGTGACCAGGGCTACGAGCTTGGGCCTGATGGCTTTGCCTGCAATGACATAGACGAGTGCAGCTACTCTAGTTACCTGTGTCAGTTCCAGTGTGTCAATGAGCCCGGGAAGTTCTCCTGTCAGTGCCCAGAAGGCTACCAGCTGCTGGGCACTCGACTATGCCAGGATATAAACGAGTGTGAGACCGGAGAGCACCAATGTACTGAAGGACAGACATGTGTGAATATCCACggtgccagtcagtgtgtggacACCAACCGTTGCCAGAGCCCTTACGTCCAAGTATCTGACAATCGCTGTGTTTGTCCTGTGACCAAGCCGGCCTGTCGAGACCTACCCTTCTCTATCGTCCAGCGCTACATGAGCATCACGTCAGAGCGCTCTGTCCCGTCAGACATCTTCCAGATACAGGCCACCAGCGTCTACCCCGGAGCCTACAACACCTTCCGTATCCGCTCTGGAGACCACGACGGAGACTTCTACATCAGAcaAATCAACAACATCAGCGCCATGCTGGTTTTAGCCCGGGCCGTGACGGGGCCCCAGGAGTACACACTGGACCTGGAGATGGTGTCAGTCAACCCCCTCCTGAGCTACCAGACCAGCTCGGCTCTGCGACTTTCAATCTACGTAGGGCCTTATGCATTctagagggaggacagagagtcagagacagagagggggagacacacaGTAGAGATACAAGAGAGGAGAAATAGGACACACAGAACAATCTAGAATTGAAAGGGGTCATAAACAGAACAGTCAGATACTGTGACATGATGTCAGACGTTTGTTAGCTTCTCCTATTTCATGACCTGCAAAGGAAACACACAACTCAAATCACAACCCTCTGGGAAAGCTGAGATAGAGTGAGGTAAAGAGACATTTCTAAAAATGAATACTTTATGGATAACGTGTGACTGACAAACATCAATACGACGAAGTGAATTTTCCCCCGGCCCACACACCGTCCATTTTTGTTCCCTGCCTCTTAGCTGAAGTCTCCTGAAGTATATTTTTCGACTGCTCCACGCTGCTCATTTGTCACGGTCCTTTGAGCCGAATAGGGACAATTACCCTAGTAACCTTTAGTACAAACCCCTGTCATGTTTCAGAAACACCCTGCAATTGAAGATAAAGAACAACACGTTATTTCATCATTCTCATCCCGTCTCTGTCATTCTCTTGCTTTGAGCAGGCCCATTCTCACGCCTGTGTTTTCATGCTACTCTCATTCCTCAGCCTTTCAATCCTTATCGTCCATGGACACGACTCAATAACCACTCAGATCCAACCTCCTCATTCCACCCTGTCTCTCCTGCATCCATCTCTCGCCTAAATCATAGCTAGTATTAGTGCTGaagctctcactcactcactcatcatTTGTAGTTTTGTCACATTAATGATTTTGTTGTAATTTTGGCCCAGGAAGCTGATACAAAATAAAACGATATACATTTTAA

Function

NR:

description
EGF-containing fibulin-like extracellular matrix protein 2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19866 EFEMP2; EGF-containing fibulin-like extracellular matrix protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583894.2 True 2558 mRNA 0.52 11 30444529 30458967

Neighbor

gene id symbol gene type direction distance location
LOC110504977 LOC106611754 coding downstream 29216 30409122 ~ 30415313 (-)
LOC110504974 LOC106611751 coding downstream 97024 30341127 ~ 30347505 (-)
LOC110504972 NA coding downstream 165132 30269989 ~ 30279397 (-)
LOC110504969 LOC106611747 coding downstream 188352 30233067 ~ 30256177 (-)
LOC110504962 pdzd11 coding downstream 591094 29848942 ~ 29853435 (-)
LOC110504979 LOC106611755 coding upstream 1932 30460899 ~ 30474809 (-)
LOC110504980 fosl1 coding upstream 21566 30480533 ~ 30485003 (-)
LOC110504987 LOC106611762 coding upstream 67473 30526440 ~ 30532235 (-)
LOC110504988 LOC106515624 coding upstream 107662 30566629 ~ 30575299 (-)
LOC110504989 LOC106611764 coding upstream 120037 30579004 ~ 30592073 (-)
G2270793 NA non-coding downstream 16821 30427506 ~ 30427708 (-)
G2270673 LOC106611749 non-coding downstream 158062 30283733 ~ 30319917 (-)
G2270681 NA non-coding downstream 161090 30283225 ~ 30283439 (-)
G2270377 NA non-coding downstream 231380 30212870 ~ 30213149 (-)
G2270311 LOC106611743 non-coding downstream 306289 30136554 ~ 30138240 (-)
G2270799 NA non-coding upstream 35048 30494015 ~ 30494576 (-)
G2270769 LOC106611761 non-coding upstream 58084 30517051 ~ 30524441 (-)
G2270840 NA non-coding upstream 80776 30539743 ~ 30540090 (-)
G2270850 NA non-coding upstream 93732 30552699 ~ 30552931 (-)
G2270858 NA non-coding upstream 100307 30559274 ~ 30559504 (-)
G2270186 NA other downstream 372400 30070378 ~ 30072129 (-)
G2269291 NA other downstream 1809230 28634930 ~ 28635299 (-)
G2269277 NA other downstream 1837741 28606400 ~ 28606788 (-)
LOC110504930 LOC106611712 other downstream 2109576 28328943 ~ 28358459 (-)
LOC110505004 LOC102314576 other upstream 713281 31172148 ~ 31175109 (-)
G2272324 NA other upstream 1794416 32253383 ~ 32253938 (-)
LOC110505054 LOC106611652 other upstream 2852949 33308270 ~ 33313952 (-)
LOC110505064 LOC106611642 other upstream 3239618 33693783 ~ 33765421 (-)

Expression


Co-expression Network