LOC110504980 (fosl1)


Basic Information

Item Value
gene id LOC110504980
gene name fosl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30480533 ~ 30485003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583898.2
AATAACTATAGAATCGGTTTGGGTGTTATAATTCCACGAGCACTCTTTACTGTTCAGTTCAACTGGAATGATCAATACGTAAGAAGTAATTCAAATGAATTTGGGAGAATTTAGTCATACATAGGAAAACAAGATTTGAATTCGCAGTTTTCTTATTCCCCTTTCTTTTTGGATCCTACCAACATCCCGCAATAAGGAGGGTTTGCCCCACGTTTGAATGAGTGAACCTGACACTTTCCCTGAACATTTAATCGCTTGCTCTTCATAAAACTCCTCAGGATTACTTTGCACTCATCGTGAATCGGGATAGTAGTTTACAATCAAGGATGTACCGAAACTTTGGGAACTTGGGCCGAGGAGGCAGCGACTCTGCGTCCACCAATACCGGATCGAGTGCTGTATCCCAGGGCACCAGCACCTCAACTACTCAACAAGATCAGAAGTTCACTGTGGCAGGTGGCAGCCAGTTTGTCCCCAGTCTCAATGCCATCACTTCCAACCAAGACCTCCAGTGGTTGGTCCAGCCCTCCTTCATTGGTCCAGCTGGCCCCTCGCGGCCTCCACGTCCTCTTTACTCACCTGCAGCAGGAATGAGGCCCTTCAACCCTTCACCTTCCCAACCACACCTCTACAGACCAGGGGTCATAAGGGCAGTGGCAAGATCCGGGAGCACAACCAGACGCAGGAACGATGAACATTTGTCCCCAGAGGAGTTGGAGAGACGCAGAATAAGGAGGGAGCGAAACAAACAGGCAGCTGCCAAGTGTCGTAACCGTCGACGGGAGCTGACAGACACGCTGCAAATCGAGACAGATGAGTTGGAAGGTAAAAAGTCCTGTCTGCAGAAAGAGATTGCCGAactagagaaggagaaagaaaagcTAGAGTTGGTTCTCGAGGCCCACCGCCCCATTTGCAAAATCCAAGACTCTGACTCAGATTCTGACCAGAGCTCAGAGCTTCCCTCATTGGGAGGTATCAAAATTGAGCCTGAGCTTCCTGACCTACCAGGGAGCTCAGCAAAGAGCCAATCAAGGATAGAGAAGCCCAAACCAAAAATTACTATCCCTGTCCGTCCTGTGACCTCCTCTGCCTCTGCTGTCCCCATGGAATCTGAGTCACTTCACACCCCAATTCTTATTTCTACTCCATCTCTTACTCCTTTCACGGCTAGTCTGGTCTTCAGTTATCCCTCTGGCTCTCTAGACTCCAGTTCCACTATTTCATCCCAGGCTCTACCGACTCTGTTATCTTCCTCTCAACATGGTGTGGCCCAGCAGTCTCGAAACCCCCAGCCCTGTAGTATTGCCCATCgccgtagcagcagcagtggggaCCAATCAGATCACTCCCTAAACTCCCCTACCATCATCACACTGTAATTTAACTGGCTTCCTCGGTGGGAAAGACTGAGTGACAACACTGACGGTTATGAAGATGAAGAAAATTATGACATAGGTGACTTTAATAACGACAGTAATTATACGCTAAATGCAGCTGGTCTACTTAATTTCCTCTGTGCCTACACTTTCCAAATAGCCCCTACACACTAAATGCACACAAAAGCTAAAATACTGATTCTCACAAAAAGCATTATGGTGATGCGAATGACTCCTATTTAAAGGGTTGCATTGTTACACTTTTTTTGTTTTCATCGATGCATATAACTTCTGACAACCTATATTTGTTATGTTCAAAACACAAGATGTAGAACTGTGCAAATGTGCAAACAAAAATGTATTAACTCGGTGTACTTTGGCAATAATGGTGATATATTTAAGGGGGtgaggtatatggccaatataccacggctaagggctgtggcATATTGGTAATATACCACAAAtacctgaggtgccttattgctattataaactggttaccaatttaattagagcagtaaaaataaatgtttgtcatacctgtggtatatggtctgatataccatggttTTCAGCAtacagggcttgaaccacccagtttgtaaTGTAGGAACCACATCATGGTAGTGCATGGTAATAAACACTGTGGGTTTGTTTAAGGGTAAATGTATGTGCATGCCAGGTAAACTTTCATGTGAGCTAGCTATCTTTTATATAAAAGATGCATTCATCTACTTCTCATATTGTACGTTTAGTACAatataatttatttaatttatgaAAAACTGCATTATTTGGGGAAAATTTGAAAGACAACTAAGGCAGGACCATGAGAGtaaatatagaatatatagacatGTATTTATTGAGTGtagtatatttttttataatgtgTCTCTTTTGACTGATGTGTGggtcagtgcagtgggcagtgcCTTCACTTAAATGTGTTCATAGACATCGgtacaataaataaaaaaatttaaagaCAACATTATGTGTATCTGGTGACGTTAAGTATGTTTGATTATGTTCATGTGATGATATTTGCATCAATATGTCAAAAAGTTCAATCAAATTCTACACTTTAAAATATCAGTATGAAAGGGGTAAAAAGAAGACTAAATGCATCCTTAGTGTTACACCCATTAGTTAGTTAGTCCATTTTGAATACGTCCCGTTTCCTGCTTGATGT
>XM_021583899.2
AATAACTATAGAATCGGTTTGGGTGTTATAATTCCACGAGCACTCTTTACTGTTCAGTTCAACTGGAATGATCAATACGTAAGAAGTAATTCAAATGAATTTGGGAGAATTTAGTCATACATAGGAAAACAAGATTTGAATTCGCAGTTTTCTTATTCCCCTTTCTTTTTGGATCCTACCAACATCCCGCAATAAGGAGGGTTTGCCCCACGTTTGAATGAGTGAACCTGACACTTTCCCTGAACATTTAATCGCTTGCTCTTCATAAAACTCCTCAGGATTACTTTGCACTCATCGTGAATCGGGATAGTAGTTTACAATCAAGGATGTACCGAAACTTTGGGAACTTGGGCCGAGGAGGCAGCGACTCTGCGTCCACCAATACCGGATCGAGTGCTGTATCCCAGGGCACCAGCACCTCAACTACTCAACAAGATCAGTTCACTGTGGCAGGTGGCAGCCAGTTTGTCCCCAGTCTCAATGCCATCACTTCCAACCAAGACCTCCAGTGGTTGGTCCAGCCCTCCTTCATTGGTCCAGCTGGCCCCTCGCGGCCTCCACGTCCTCTTTACTCACCTGCAGCAGGAATGAGGCCCTTCAACCCTTCACCTTCCCAACCACACCTCTACAGACCAGGGGTCATAAGGGCAGTGGCAAGATCCGGGAGCACAACCAGACGCAGGAACGATGAACATTTGTCCCCAGAGGAGTTGGAGAGACGCAGAATAAGGAGGGAGCGAAACAAACAGGCAGCTGCCAAGTGTCGTAACCGTCGACGGGAGCTGACAGACACGCTGCAAATCGAGACAGATGAGTTGGAAGGTAAAAAGTCCTGTCTGCAGAAAGAGATTGCCGAactagagaaggagaaagaaaagcTAGAGTTGGTTCTCGAGGCCCACCGCCCCATTTGCAAAATCCAAGACTCTGACTCAGATTCTGACCAGAGCTCAGAGCTTCCCTCATTGGGAGGTATCAAAATTGAGCCTGAGCTTCCTGACCTACCAGGGAGCTCAGCAAAGAGCCAATCAAGGATAGAGAAGCCCAAACCAAAAATTACTATCCCTGTCCGTCCTGTGACCTCCTCTGCCTCTGCTGTCCCCATGGAATCTGAGTCACTTCACACCCCAATTCTTATTTCTACTCCATCTCTTACTCCTTTCACGGCTAGTCTGGTCTTCAGTTATCCCTCTGGCTCTCTAGACTCCAGTTCCACTATTTCATCCCAGGCTCTACCGACTCTGTTATCTTCCTCTCAACATGGTGTGGCCCAGCAGTCTCGAAACCCCCAGCCCTGTAGTATTGCCCATCgccgtagcagcagcagtggggaCCAATCAGATCACTCCCTAAACTCCCCTACCATCATCACACTGTAATTTAACTGGCTTCCTCGGTGGGAAAGACTGAGTGACAACACTGACGGTTATGAAGATGAAGAAAATTATGACATAGGTGACTTTAATAACGACAGTAATTATACGCTAAATGCAGCTGGTCTACTTAATTTCCTCTGTGCCTACACTTTCCAAATAGCCCCTACACACTAAATGCACACAAAAGCTAAAATACTGATTCTCACAAAAAGCATTATGGTGATGCGAATGACTCCTATTTAAAGGGTTGCATTGTTACACTTTTTTTGTTTTCATCGATGCATATAACTTCTGACAACCTATATTTGTTATGTTCAAAACACAAGATGTAGAACTGTGCAAATGTGCAAACAAAAATGTATTAACTCGGTGTACTTTGGCAATAATGGTGATATATTTAAGGGGGtgaggtatatggccaatataccacggctaagggctgtggcATATTGGTAATATACCACAAAtacctgaggtgccttattgctattataaactggttaccaatttaattagagcagtaaaaataaatgtttgtcatacctgtggtatatggtctgatataccatggttTTCAGCAtacagggcttgaaccacccagtttgtaaTGTAGGAACCACATCATGGTAGTGCATGGTAATAAACACTGTGGGTTTGTTTAAGGGTAAATGTATGTGCATGCCAGGTAAACTTTCATGTGAGCTAGCTATCTTTTATATAAAAGATGCATTCATCTACTTCTCATATTGTACGTTTAGTACAatataatttatttaatttatgaAAAACTGCATTATTTGGGGAAAATTTGAAAGACAACTAAGGCAGGACCATGAGAGtaaatatagaatatatagacatGTATTTATTGAGTGtagtatatttttttataatgtgTCTCTTTTGACTGATGTGTGggtcagtgcagtgggcagtgcCTTCACTTAAATGTGTTCATAGACATCGgtacaataaataaaaaaatttaaagaCAACATTATGTGTATCTGGTGACGTTAAGTATGTTTGATTATGTTCATGTGATGATATTTGCATCAATATGTCAAAAAGTTCAATCAAATTCTACACTTTAAAATATCAGTATGAAAGGGGTAAAAAGAAGACTAAATGCATCCTTAGTGTTACACCCATTAGTTAGTTAGTCCATTTTGAATACGTCCCGTTTCCTGCTTGATGT

Function

symbol description
fosl1 Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of DNA-templated transcription, initiation and positive regulation of pri-miRNA transcription by RNA polymerase II. Located in nucleoplasm. Biomarker of cervical squamous cell carcinoma and ductal carcinoma in situ.

NR:

description
fos-related antigen 1 isoform X2

GO: NA

KEGG:

id description
K04502 FOSL1; fos-like antigen 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583898.2 False 2577 mRNA 0.42 4 30480533 30485003
XM_021583899.2 True 2574 mRNA 0.42 4 30480533 30485003

Neighbor

gene id symbol gene type direction distance location
LOC110504979 LOC106611755 coding downstream 5724 30460899 ~ 30474809 (-)
LOC110504978 fbln4 coding downstream 21566 30444529 ~ 30458967 (-)
LOC110504977 LOC106611754 coding downstream 65220 30409122 ~ 30415313 (-)
LOC110504974 LOC106611751 coding downstream 133028 30341127 ~ 30347505 (-)
LOC110504972 NA coding downstream 201136 30269989 ~ 30279397 (-)
LOC110504987 LOC106611762 coding upstream 41437 30526440 ~ 30532235 (-)
LOC110504988 LOC106515624 coding upstream 81626 30566629 ~ 30575299 (-)
LOC110504989 LOC106611764 coding upstream 94001 30579004 ~ 30592073 (-)
LOC110504993 LOC106611766 coding upstream 107215 30592218 ~ 30598862 (-)
LOC110504991 LOC106611768 coding upstream 127743 30612746 ~ 30623553 (-)
G2270807 NA non-coding downstream 28379 30451554 ~ 30452154 (-)
G2270793 NA non-coding downstream 52825 30427506 ~ 30427708 (-)
G2270673 LOC106611749 non-coding downstream 194066 30283733 ~ 30319917 (-)
G2270681 NA non-coding downstream 197094 30283225 ~ 30283439 (-)
G2270377 NA non-coding downstream 267384 30212870 ~ 30213149 (-)
G2270799 NA non-coding upstream 9012 30494015 ~ 30494576 (-)
G2270769 LOC106611761 non-coding upstream 32048 30517051 ~ 30524441 (-)
G2270840 NA non-coding upstream 54740 30539743 ~ 30540090 (-)
G2270850 NA non-coding upstream 67696 30552699 ~ 30552931 (-)
G2270858 NA non-coding upstream 74271 30559274 ~ 30559504 (-)
G2270186 NA other downstream 408404 30070378 ~ 30072129 (-)
G2269291 NA other downstream 1845234 28634930 ~ 28635299 (-)
G2269277 NA other downstream 1873745 28606400 ~ 28606788 (-)
LOC110504930 LOC106611712 other downstream 2145580 28328943 ~ 28358459 (-)
LOC110505004 LOC102314576 other upstream 687245 31172148 ~ 31175109 (-)
G2272324 NA other upstream 1768380 32253383 ~ 32253938 (-)
LOC110505054 LOC106611652 other upstream 2826913 33308270 ~ 33313952 (-)
LOC110505064 LOC106611642 other upstream 3213582 33693783 ~ 33765421 (-)

Expression

LOC110504980(fosl1) Expression in all Baseline Samples

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LOC110504980(fosl1) Expression in each Bioproject

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LOC110504980(fosl1) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network