LOC110504982 (yif1a)


Basic Information

Item Value
gene id LOC110504982
gene name yif1a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30488564 ~ 30496448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969839.1
TAGGTTGAAAGAGCTGATGAATATGTAATTCAGAGTTTCCTACTGTGCTCTCTTTGGTTTAATGAATAGCGAAGACTGATATCCCCGAAAACCAATCCGTGCACAGGCTGAATCTTTATTTTGGACCAATAGAAGTATTTTGCTTATCCACGCTGCCACGCAGGCACAGAAGACGACCATTAATAGCTAAGGTGTTTACAATGGACCTTCCACATCATGGCTACCGAGCAAGTGCAAAGCCAAGAGCCCGTGCAGCTCCCCCCGCCGGGGACCCTCTCCTCTTTGACGATACCAGTTCGGCAGCACCACCAATGAACAGTCAGGGTTTCTACACCCCTGGGTACAACATGGGAGGGGCTCCAGCTGGAGGGCCAGGAGGTGCTGGGGTTAACAACCTGTTTGCTGACCCAATGGCCAGTGCAGCCATGATATATGGCTCTTCCCTGGCCAACCAGGGAAAGGATATTGTCAACAAGGAGATCAGCAGGTACGTGTCTGTGAACAAGCTGAAGTATTTCTTTGCCGTCGACAGCAAATATGTAATGAAGAAACTTCTGCTCCTCATGTTCCCATACACACACCAGGACTGGGAAGTTCGTTACCACAGAGACACTCCTCTTACACCCAGGCATGACGTGAATGCACCCGACCTTTACATACCTTCAATGGCTTTCATCACCTACATTTTGCTTGCTGGGATGGCCCTTGGCATTCAGAACAGGTTCAGTCCAGAGGTCCTTGGTCTGTGTGCCAGCACTGCTTTGGTGTGGGTCGTTATAGAGGTCTTGGTCATGTTGTTGAGTCTCTACCTTCTCACGGTTCACTCTGACCTATCCACGTTTGACCTCATTGCCTACAGTGGATACAAATATGTGGGGATGATTTTCACAGTGCTGGGTGGTCTGCTGTTTGGCAGTGATGGTTACTTCGTGGCTCTCGCCTGGTCATCGTGTGCTCTTATGTTTTTCATTGTCCGTTCTCTCAAAATGAAGATTCTGTCGTCTCTCTCCCATGACTCCATGGGGGCTGGGGCGAGTGCCAAACCAAGACTCCGCCTGTACATCACCGTGGCCACCGCCGCCTTTCAGCCAATCATTATCTACTGGCTCACCTCACATCTGGTCAGGTGACCTGATATGGGGTCTGATGCGGAGGTCCTTTGGTATCgaactttaaaaataaaaataaaatttaaaaaaaaaacgtaaaaaaCACTGATGCTTTCTACAAATTTGGTTCTTCTGAGTGTCACTGTTACCTGCCTTTCAGCTCATCTGCCAGAGAAAAGGGGATACTAGATATCGAGCTGTATCTTGTGTTCAGCTTGTGGGTTAGTTTtaaatgaacatttatttttgaCTCCTCTACAGTGTGAGACTTTTGTATGCAAGATGCATCGCTTGTCAAAAtggaaggcttttatgttttctCACCATGAGTGTTTTACTGAGTCCTTTTTGGCCCTCTTATTTATAGAGAAAGAAGGGTTTTGTATTCATGAAATTGGAATATGATTATGAGAAACATTTCACACCACACTCCAGTTTTCCTCTAAAGTTTCCTGTGTATATTGTCCATTTGGGCTTACCAGAAATGTTGCAGTATGGTTAAATGTAAAATGATGGAGCTACTCTGAGGATGTGCTACCAGTGCACTCTTATCTTCCCCATTTGTCCTTCCCTGTTAAACCCTCCTTTATTATGTATCTAAACTTTATAGAGCATGAACAACAATCAGTGTTATGTTTTTTgtagaaaaataaacatatttagcTTTGAATTTTAA
>XM_021583901.2
ATTAATAGCTAAGGTAAAGTAAAAGAGGCGGGTTCTAGGAAGCACCATAGGACACGTAGGTGTTTACAATGGACCTTCCACATCATGGCTACCGAGCAAGTGCAAAGCCAAGAGCCCGTGCAGCTCCCCCCGCCGGGGACCCTCTCCTCTTTGACGATACCAGTTCGGCAGCACCACCAATGAACAGTCAGGGTTTCTACACCCCTGGGTACAACATGGGAGGGGCTCCAGCTGGAGGGCCAGGAGGTGCTGGGGTTAACAACCTGTTTGCTGACCCAATGGCCAGTGCAGCCATGATATATGGCTCTTCCCTGGCCAACCAGGGAAAGGATATTGTCAACAAGGAGATCAGCAGGTACGTGTCTGTGAACAAGCTGAAGTATTTCTTTGCCGTCGACAGCAAATATGTAATGAAGAAACTTCTGCTCCTCATGTTCCCATACACACACCAGGACTGGGAAGTTCGTTACCACAGAGACACTCCTCTTACACCCAGGCATGACGTGAATGCACCCGACCTTTACATACCTTCAATGGCTTTCATCACCTACATTTTGCTTGCTGGGATGGCCCTTGGCATTCAGAACAGGTTCAGTCCAGAGGTCCTTGGTCTGTGTGCCAGCACTGCTTTGGTGTGGGTCGTTATAGAGGTCTTGGTCATGTTGTTGAGTCTCTACCTTCTCACGGTTCACTCTGACCTATCCACGTTTGACCTCATTGCCTACAGTGGATACAAATATGTGGGGATGATTTTCACAGTGCTGGGTGGTCTGCTGTTTGGCAGTGATGGTTACTTCGTGGCTCTCGCCTGGTCATCGTGTGCTCTTATGTTTTTCATTGTCCGTTCTCTCAAAATGAAGATTCTGTCGTCTCTCTCCCATGACTCCATGGGGGCTGGGGCGAGTGCCAAACCAAGACTCCGCCTGTACATCACCGTGGCCACCGCCGCCTTTCAGCCAATCATTATCTACTGGCTCACCTCACATCTGGTCAGGTGACCTGATATGGGGTCTGATGCGGAGGTCCTTTGGTATCgaactttaaaaataaaaataaaatttaaaaaaaaaacgtaaaaaaCACTGATGCTTTCTACAAATTTGGTTCTTCTGAGTGTCACTGTTACCTGCCTTTCAGCTCATCTGCCAGAGAAAAGGGGATACTAGATATCGAGCTGTATCTTGTGTTCAGCTTGTGGGTTAGTTTtaaatgaacatttatttttgaCTCCTCTACAGTGTGAGACTTTTGTATGCAAGATGCATCGCTTGTCAAAAtggaaggcttttatgttttctCACCATGAGTGTTTTACTGAGTCCTTTTTGGCCCTCTTATTTATAGAGAAAGAAGGGTTTTGTATTCATGAAATTGGAATATGATTATGAGAAACATTTCACACCACACTCCAGTTTTCCTCTAAAGTTTCCTGTGTATATTGTCCATTTGGGCTTACCAGAAATGTTGCAGTATGGTTAAATGTAAAATGATGGAGCTACTCTGAGGATGTGCTACCAGTGCACTCTTATCTTCCCCATTTGTCCTTCCCTGTTAAACCCTCCTTTATTATGTATCTAAACTTTATAGAGCATGAACAACAATCAGTGTTATGTTTTTTgtagaaaaataaacatatttagcTTTGAATTTTAA
>XM_021583902.2
GCTAAGGTAAAGTAAAAGAGGCGGGTTCTAGGAAGCACCATAGGACACGTGTTTACAATGGACCTTCCACATCATGGCTACCGAGCAAGTGCAAAGCCAAGAGCCCGTGCAGCTCCCCCCGCCGGGGACCCTCTCCTCTTTGACGATACCAGTTCGGCAGCACCACCAATGAACAGTCAGGGTTTCTACACCCCTGGGTACAACATGGGAGGGGCTCCAGCTGGAGGGCCAGGAGGTGCTGGGGTTAACAACCTGTTTGCTGACCCAATGGCCAGTGCAGCCATGATATATGGCTCTTCCCTGGCCAACCAGGGAAAGGATATTGTCAACAAGGAGATCAGCAGGTACGTGTCTGTGAACAAGCTGAAGTATTTCTTTGCCGTCGACAGCAAATATGTAATGAAGAAACTTCTGCTCCTCATGTTCCCATACACACACCAGGACTGGGAAGTTCGTTACCACAGAGACACTCCTCTTACACCCAGGCATGACGTGAATGCACCCGACCTTTACATACCTTCAATGGCTTTCATCACCTACATTTTGCTTGCTGGGATGGCCCTTGGCATTCAGAACAGGTTCAGTCCAGAGGTCCTTGGTCTGTGTGCCAGCACTGCTTTGGTGTGGGTCGTTATAGAGGTCTTGGTCATGTTGTTGAGTCTCTACCTTCTCACGGTTCACTCTGACCTATCCACGTTTGACCTCATTGCCTACAGTGGATACAAATATGTGGGGATGATTTTCACAGTGCTGGGTGGTCTGCTGTTTGGCAGTGATGGTTACTTCGTGGCTCTCGCCTGGTCATCGTGTGCTCTTATGTTTTTCATTGTCCGTTCTCTCAAAATGAAGATTCTGTCGTCTCTCTCCCATGACTCCATGGGGGCTGGGGCGAGTGCCAAACCAAGACTCCGCCTGTACATCACCGTGGCCACCGCCGCCTTTCAGCCAATCATTATCTACTGGCTCACCTCACATCTGGTCAGGTGACCTGATATGGGGTCTGATGCGGAGGTCCTTTGGTATCgaactttaaaaataaaaataaaatttaaaaaaaaaacgtaaaaaaCACTGATGCTTTCTACAAATTTGGTTCTTCTGAGTGTCACTGTTACCTGCCTTTCAGCTCATCTGCCAGAGAAAAGGGGATACTAGATATCGAGCTGTATCTTGTGTTCAGCTTGTGGGTTAGTTTtaaatgaacatttatttttgaCTCCTCTACAGTGTGAGACTTTTGTATGCAAGATGCATCGCTTGTCAAAAtggaaggcttttatgttttctCACCATGAGTGTTTTACTGAGTCCTTTTTGGCCCTCTTATTTATAGAGAAAGAAGGGTTTTGTATTCATGAAATTGGAATATGATTATGAGAAACATTTCACACCACACTCCAGTTTTCCTCTAAAGTTTCCTGTGTATATTGTCCATTTGGGCTTACCAGAAATGTTGCAGTATGGTTAAATGTAAAATGATGGAGCTACTCTGAGGATGTGCTACCAGTGCACTCTTATCTTCCCCATTTGTCCTTCCCTGTTAAACCCTCCTTTATTATGTATCTAAACTTTATAGAGCATGAACAACAATCAGTGTTATGTTTTTTgtagaaaaataaacatatttagcTTTGAATTTTAA
>XM_021583903.2
AAATAGTGAATATTGTATTCCATGAGTGTTTACAATGGACCTTCCACATCATGGCTACCGAGCAAGTGCAAAGCCAAGAGCCCGTGCAGCTCCCCCCGCCGGGGACCCTCTCCTCTTTGACGATACCAGTTCGGCAGCACCACCAATGAACAGTCAGGGTTTCTACACCCCTGGGTACAACATGGGAGGGGCTCCAGCTGGAGGGCCAGGAGGTGCTGGGGTTAACAACCTGTTTGCTGACCCAATGGCCAGTGCAGCCATGATATATGGCTCTTCCCTGGCCAACCAGGGAAAGGATATTGTCAACAAGGAGATCAGCAGGTACGTGTCTGTGAACAAGCTGAAGTATTTCTTTGCCGTCGACAGCAAATATGTAATGAAGAAACTTCTGCTCCTCATGTTCCCATACACACACCAGGACTGGGAAGTTCGTTACCACAGAGACACTCCTCTTACACCCAGGCATGACGTGAATGCACCCGACCTTTACATACCTTCAATGGCTTTCATCACCTACATTTTGCTTGCTGGGATGGCCCTTGGCATTCAGAACAGGTTCAGTCCAGAGGTCCTTGGTCTGTGTGCCAGCACTGCTTTGGTGTGGGTCGTTATAGAGGTCTTGGTCATGTTGTTGAGTCTCTACCTTCTCACGGTTCACTCTGACCTATCCACGTTTGACCTCATTGCCTACAGTGGATACAAATATGTGGGGATGATTTTCACAGTGCTGGGTGGTCTGCTGTTTGGCAGTGATGGTTACTTCGTGGCTCTCGCCTGGTCATCGTGTGCTCTTATGTTTTTCATTGTCCGTTCTCTCAAAATGAAGATTCTGTCGTCTCTCTCCCATGACTCCATGGGGGCTGGGGCGAGTGCCAAACCAAGACTCCGCCTGTACATCACCGTGGCCACCGCCGCCTTTCAGCCAATCATTATCTACTGGCTCACCTCACATCTGGTCAGGTGACCTGATATGGGGTCTGATGCGGAGGTCCTTTGGTATCgaactttaaaaataaaaataaaatttaaaaaaaaaacgtaaaaaaCACTGATGCTTTCTACAAATTTGGTTCTTCTGAGTGTCACTGTTACCTGCCTTTCAGCTCATCTGCCAGAGAAAAGGGGATACTAGATATCGAGCTGTATCTTGTGTTCAGCTTGTGGGTTAGTTTtaaatgaacatttatttttgaCTCCTCTACAGTGTGAGACTTTTGTATGCAAGATGCATCGCTTGTCAAAAtggaaggcttttatgttttctCACCATGAGTGTTTTACTGAGTCCTTTTTGGCCCTCTTATTTATAGAGAAAGAAGGGTTTTGTATTCATGAAATTGGAATATGATTATGAGAAACATTTCACACCACACTCCAGTTTTCCTCTAAAGTTTCCTGTGTATATTGTCCATTTGGGCTTACCAGAAATGTTGCAGTATGGTTAAATGTAAAATGATGGAGCTACTCTGAGGATGTGCTACCAGTGCACTCTTATCTTCCCCATTTGTCCTTCCCTGTTAAACCCTCCTTTATTATGTATCTAAACTTTATAGAGCATGAACAACAATCAGTGTTATGTTTTTTgtagaaaaataaacatatttagcTTTGAATTTTAA

Function

symbol description
yif1a Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in COPII-coated ER to Golgi transport vesicle; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment. Predicted to be integral component of Golgi membrane. Is expressed in blood; liver; pectoral fin; and ventral mesoderm. Orthologous to human YIF1A (Yip1 interacting factor homolog A, membrane trafficking protein).

NR:

description
protein YIF1A

GO: NA

KEGG:

id description
K20362 YIF1; protein transport protein YIF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969839.1 False 1785 mRNA 0.45 9 30488564 30496448
XM_021583901.2 False 1653 mRNA 0.45 9 30488742 30496448
XM_021583902.2 False 1642 mRNA 0.45 9 30488749 30496448
XM_021583903.2 True 1619 mRNA 0.45 9 30488824 30496448

Neighbor

gene id symbol gene type direction distance location
LOC110504981 LOC106611758 coding upstream 8671 30476682 ~ 30479893 (+)
LOC110504976 mrpl11 coding upstream 105324 30321823 ~ 30383240 (+)
LOC110504973 LOC106611750 coding upstream 169525 30302588 ~ 30319039 (+)
LOC110504971 LOC106611749 coding upstream 202097 30283699 ~ 30286467 (+)
LOC110504970 LOC106611748 coding upstream 206117 30272277 ~ 30282447 (+)
LOC110504984 LOC106604710 coding downstream 184 30496632 ~ 30500159 (+)
LOC110504985 LOC106611760 coding downstream 5621 30502069 ~ 30516383 (+)
LOC110504986 LOC106611761 coding downstream 20883 30517331 ~ 30524440 (+)
LOC110504990 LOC106611765 coding downstream 103581 30600029 ~ 30611248 (+)
trnaa-agc-11 NA coding downstream 156231 30652167 ~ 30706266 (+)
G2270478 NA non-coding upstream 61157 30382613 ~ 30427407 (+)
G2270407 NA non-coding upstream 224668 30263545 ~ 30263896 (+)
G2270388 NA non-coding upstream 256580 30231773 ~ 30231984 (+)
G2270382 NA non-coding upstream 272360 30215906 ~ 30216204 (+)
G2270553 NA non-coding downstream 28220 30524668 ~ 30524958 (+)
G2270557 NA non-coding downstream 36453 30532901 ~ 30533121 (+)
G2270573 NA non-coding downstream 46332 30542780 ~ 30543017 (+)
G2270572 NA non-coding downstream 79060 30575508 ~ 30577126 (+)
G2268400 LOC106611722 other upstream 1590485 28896755 ~ 28898079 (+)
G2268340 NA other upstream 1720835 28766877 ~ 28767729 (+)
G2266826 NA other upstream 3552675 26934720 ~ 26935889 (+)
G2266668 LOC106611853 other upstream 3867616 26588592 ~ 26620948 (+)
LOC110504416 diaph1 other upstream 4116081 26298775 ~ 26483992 (+)
G2271027 NA other downstream 680442 31176890 ~ 31181107 (+)
G2272912 LOC106611792 other downstream 2366988 32863436 ~ 32866226 (+)
LOC110505056 LOC105028844 other downstream 2919642 33328263 ~ 33421963 (+)
LOC110505080 LOC106611630 other downstream 3705635 34202011 ~ 34207415 (+)
G2274048 NA other downstream 3735547 34231995 ~ 34232604 (+)

Expression


Co-expression Network