LOC110504985 (LOC106611760)


Basic Information

Item Value
gene id LOC110504985
gene name LOC106611760
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30502069 ~ 30516383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970010.1
TACAAAATGAAATTATAATGTGCTAAACCCATTCATGTCCGTTATGGACATAAATTGGTTTAGCACATACTGTAGATTCCGCATTAGTAGCACTCCATTAAAATCTACCTTAGCCATCAGCACAAGGGGAACGATGGGGAGTGAGCCAGGCCCAGTCCAGATTGTGACAGTTTGCAAGGAGGATCACTCCTTTGCCTTGGACACAGAGGCTCTGGGACGGGTTCTGCTGGCACCGGAGGTCCGGGACAAACATGTGGTGGTGCTCTCAGTGGCTGGGGCCTTCCGGAAAGGCAAGAGCTTCATTCTGGACTTCATGCTCCGCTACATGTACAGGAAGAAGCATGGTGAGGAATGGCTGGGCCAGGACGATGAGCCCCTGACTGGGTTCAAATGGAGGGGGGGCTCAGAGCCAGAGACCACCGGCATCCAGCTGTGGAGTGAGGTCTTCCTGGTGGAGAAGAGTGATGGAACAGAGGTGGCAGTATTACTGATGGACACCCAGGGTGCATTTGATAACCAGTCAACCGTGAAGGATTGTGCCACAATCTTTGCCCTCAGCACCATGACCAGCTCAATACAGATCTACAACCTCTCACAGAACATTCAGGAAGATGATCTGCAGCAGTTGCAGCTATTCACAGAGTATGGTCGCCTCGCCATGGATGAAATCTATCTGAAGCCCTTTCAGTCTCTGATGTTCCTAATCAGGGATTGGAGCTTTCCTTATGAGTATAAATATGGGCTCAACGGAGGCAGAGAGTTCCTGGATAAACGTCTACAGGTGAAGGAGACCCAGCATGAGGAACTACAGACAGTGAGGGAACACATTCATTCCTGCTTCACCTCCATCAACTGTTTCCTGCTACCACATCCTGGGTTGAAGGTGGCCACCAGCCCCGCTTTCAAAGGCCAGCTTAGTGATGTGGCTCCCGAGTTTAAAAAGGAGCTTCGCAACCTCATCGCCACACTGCTGCACCCTAACTGCCTGGCTGAGAAAGAGATCAACGGCAACAAAGTCACCTGCAGGGGCCTGCTGGAGTTCTTCAAGGCATACATCAAGATCTACCAAGGTGAAGACTTGCCACACCCGAAGTCTATGCTGCAGGCCACAGCAGAGGCCAACAACTTGGCAGCCGTGGCAGGAGCCAAAGACCAGTATTACAAGAACATGGAGAAGGTTTGTGGGGGAGACCTTCCCTATGTGGCTCCTGCCTCTCTGGAGGAGAAGCACCACTTCTTCCTCCAGGAGTCCCTCCATGTCTTCTCCTCCACAAAGAAGATGGGAGGGCAGGAGTTCTGCGACCGCTACCGAGACCAGCTTGAGGCCGAGCTGGTAGAACTGTGGCAGTCTTTCACCAAGCACAATGAGTCAAAGAATGTCTTCAGTGCTTTCCGGACGCCCGCAGTGCTTTTTGTCCTTGTGTGCTTCCTGTACGTGCTGTCAGGGCTGTTGCTCTTCATCGGGCTGGCTACAATTGCTTTGATATGTGACTGTGTCTTGGGCCTGGCCATGGTCGCCATGCTCACCTGGAGCTTCATACGCTATTCGGGAAAATACCGGGGGCTGGGGGGAGCCATCGACCAGACAGCAGATGTCATACTGCAGCAGGCCACTGTGGTATTGAACAAGTCGAGGCCAGCGGTGGCTGAGATGAGGAAATCCAGCTAGATGGCCTTGACCCTATTTATCTTAATGCAATACAACATGCACACAACACAAGCACACATCCCAGCACTAAAGCCTTACCATGCTACCCAATGGAACCAACATATGATTATAATGGCAGTGGGAGGTCAACATGATGCACATTCACCAGCATCTTTTCAATCGCACAATTTTACACTACATACAAAGGTTATATCAGTGTCTATCTAGATAAAGATTAGACTACAGTCTTACAGAGTATCTGGGGCAAGGTGCATTCTGAGACCCATGGGGTTGTTTATTCCCCTGGACCTGTTTTTAACATTGACTGACACTGCCATTCTCACACACTTCCCCTCATTTATATAGACAACCCAGTGATGTTTACGTAGAAACACTAGACCCAAGTATTGTATTATTGGACATGCCATGGATTTGAATGCATCATAATCTACGTATCCTTTCTGACCAATGCTTAGTAATAGGATGCTGGCCAGGGTGGTTTTAAGTCATGTTAGACTTAAGCAGTGTATCCTCCTGATGCAATTTACCTATGCTATGCTGTGCTGTAATGGGGTATACCAGTTATACATGTAGCCAGATCTTTTTGACTTAATGCTGGTCTCTTTATACCGCTCTGTGGCCTTGTGCACATTCCTTCCCATTCCCAGTTTTGCATTATGCACCTTATTTGCATCCCCTTTATCCATGTCAGAGATTCCTTGTactgctttctcttctttcttGATACCAAGATTGGTGACTCTAAAACACAAGCCCACTTTAGAGGCAGTGCAAGTGCTGATGCATTCCACTGTTATCTTTTAATTTTTAGACTGCTTCACTGCTTGTAACTTGACCAAAATGTTGTACGGTTCTGAACTTGGAAGGTTGGTTAAGAGATGTTAGTTGCACTTACTTGAGAAATAAATGCTCCAAAGATGTTATATGTAAGATTTTTCAATACAGATGATTGCTTGAAAGGAGATTGTGATCATTTCGAATTTATGGGAACCGTTTTCTTAACTGTTTTGTGTGTAAGCAGGTGATGGGTATTGTGAGGCGGTTCAGTGACCTGTCAGCCAAAGAACTACTTATAAACATAGGGGTACAATAAAAGGCAAGAGACCTCTTCCTCAGAATCCAGATAAATCAACATAGTTCTAGAAGTTCCATTGGCTCTGACATTCCTTTTGCACATTCCATATCTATGTTCCATTCCATTGTTGAGGAGGCTACTATTGGAGGGATTTTTCCGCAATTACTATTGCACTCGCCCTCCTCTCTGTACAATTTACATTTGAACTCATtccacaaataaaaaatatattacagTAGATGCATGAAATtcatgttttttaaaaaaaattaatttcttccttttTGTTTTAATCATCTTTTGCAATGGTATTTTGTTGGGTCTTGGTTACTGAAATGTTTAAATTTTTTAAGAAAGTCATGCTTAAGCCAAATAAAATGCATAAGACCTGTGTAA
>XM_021583907.2
TCATGGCATTGACAAAACCACAAGCCCTACAGGTCAATTCGACTGCGGACGCGGAAGTGAATGAATTCGTAGTTTGAAAAAGTTTTCATGACAGCAGTATTGTTAATTTTCTGACTCATTGCTTGTGCCTGTGAATTCCTCATTCGGGATACCAAAGGGAACGATGGGGAGTGAGCCAGGCCCAGTCCAGATTGTGACAGTTTGCAAGGAGGATCACTCCTTTGCCTTGGACACAGAGGCTCTGGGACGGGTTCTGCTGGCACCGGAGGTCCGGGACAAACATGTGGTGGTGCTCTCAGTGGCTGGGGCCTTCCGGAAAGGCAAGAGCTTCATTCTGGACTTCATGCTCCGCTACATGTACAGGAAGAAGCATGGTGAGGAATGGCTGGGCCAGGACGATGAGCCCCTGACTGGGTTCAAATGGAGGGGGGGCTCAGAGCCAGAGACCACCGGCATCCAGCTGTGGAGTGAGGTCTTCCTGGTGGAGAAGAGTGATGGAACAGAGGTGGCAGTATTACTGATGGACACCCAGGGTGCATTTGATAACCAGTCAACCGTGAAGGATTGTGCCACAATCTTTGCCCTCAGCACCATGACCAGCTCAATACAGATCTACAACCTCTCACAGAACATTCAGGAAGATGATCTGCAGCAGTTGCAGCTATTCACAGAGTATGGTCGCCTCGCCATGGATGAAATCTATCTGAAGCCCTTTCAGTCTCTGATGTTCCTAATCAGGGATTGGAGCTTTCCTTATGAGTATAAATATGGGCTCAACGGAGGCAGAGAGTTCCTGGATAAACGTCTACAGGTGAAGGAGACCCAGCATGAGGAACTACAGACAGTGAGGGAACACATTCATTCCTGCTTCACCTCCATCAACTGTTTCCTGCTACCACATCCTGGGTTGAAGGTGGCCACCAGCCCCGCTTTCAAAGGCCAGCTTAGTGATGTGGCTCCCGAGTTTAAAAAGGAGCTTCGCAACCTCATCGCCACACTGCTGCACCCTAACTGCCTGGCTGAGAAAGAGATCAACGGCAACAAAGTCACCTGCAGGGGCCTGCTGGAGTTCTTCAAGGCATACATCAAGATCTACCAAGGTGAAGACTTGCCACACCCGAAGTCTATGCTGCAGGCCACAGCAGAGGCCAACAACTTGGCAGCCGTGGCAGGAGCCAAAGACCAGTATTACAAGAACATGGAGAAGGTTTGTGGGGGAGACCTTCCCTATGTGGCTCCTGCCTCTCTGGAGGAGAAGCACCACTTCTTCCTCCAGGAGTCCCTCCATGTCTTCTCCTCCACAAAGAAGATGGGAGGGCAGGAGTTCTGCGACCGCTACCGAGACCAGCTTGAGGCCGAGCTGGTAGAACTGTGGCAGTCTTTCACCAAGCACAATGAGTCAAAGAATGTCTTCAGTGCTTTCCGGACGCCCGCAGTGCTTTTTGTCCTTGTGTGCTTCCTGTACGTGCTGTCAGGGCTGTTGCTCTTCATCGGGCTGGCTACAATTGCTTTGATATGTGACTGTGTCTTGGGCCTGGCCATGGTCGCCATGCTCACCTGGAGCTTCATACGCTATTCGGGAAAATACCGGGGGCTGGGGGGAGCCATCGACCAGACAGCAGATGTCATACTGCAGCAGGCCACTGTGGTATTGAACAAGTCGAGGCCAGCGGTGGCTGAGATGAGGAAATCCAGCTAGATGGCCTTGACCCTATTTATCTTAATGCAATACAACATGCACACAACACAAGCACACATCCCAGCACTAAAGCCTTACCATGCTACCCAATGGAACCAACATATGATTATAATGGCAGTGGGAGGTCAACATGATGCACATTCACCAGCATCTTTTCAATCGCACAATTTTACACTACATACAAAGGTTATATCAGTGTCTATCTAGATAAAGATTAGACTACAGTCTTACAGAGTATCTGGGGCAAGGTGCATTCTGAGACCCATGGGGTTGTTTATTCCCCTGGACCTGTTTTTAACATTGACTGACACTGCCATTCTCACACACTTCCCCTCATTTATATAGACAACCCAGTGATGTTTACGTAGAAACACTAGACCCAAGTATTGTATTATTGGACATGCCATGGATTTGAATGCATCATAATCTACGTATCCTTTCTGACCAATGCTTAGTAATAGGATGCTGGCCAGGGTGGTTTTAAGTCATGTTAGACTTAAGCAGTGTATCCTCCTGATGCAATTTACCTATGCTATGCTGTGCTGTAATGGGGTATACCAGTTATACATGTAGCCAGATCTTTTTGACTTAATGCTGGTCTCTTTATACCGCTCTGTGGCCTTGTGCACATTCCTTCCCATTCCCAGTTTTGCATTATGCACCTTATTTGCATCCCCTTTATCCATGTCAGAGATTCCTTGTactgctttctcttctttcttGATACCAAGATTGGTGACTCTAAAACACAAGCCCACTTTAGAGGCAGTGCAAGTGCTGATGCATTCCACTGTTATCTTTTAATTTTTAGACTGCTTCACTGCTTGTAACTTGACCAAAATGTTGTACGGTTCTGAACTTGGAAGGTTGGTTAAGAGATGTTAGTTGCACTTACTTGAGAAATAAATGCTCCAAAGATGTTATATGTAAGATTTTTCAATACAGATGATTGCTTGAAAGGAGATTGTGATCATTTCGAATTTATGGGAACCGTTTTCTTAACTGTTTTGTGTGTAAGCAGGTGATGGGTATTGTGAGGCGGTTCAGTGACCTGTCAGCCAAAGAACTACTTATAAACATAGGGGTACAATAAAAGGCAAGAGACCTCTTCCTCAGAATCCAGATAAATCAACATAGTTCTAGAAGTTCCATTGGCTCTGACATTCCTTTTGCACATTCCATATCTATGTTCCATTCCATTGTTGAGGAGGCTACTATTGGAGGGATTTTTCCGCAATTACTATTGCACTCGCCCTCCTCTCTGTACAATTTACATTTGAACTCATtccacaaataaaaaatatattacagTAGATGCATGAAATtcatgttttttaaaaaaaattaatttcttccttttTGTTTTAATCATCTTTTGCAATGGTATTTTGTTGGGTCTTGGTTACTGAAATGTTTAAATTTTTTAAGAAAGTCATGCTTAAGCCAAATAAAATGCATAAGACCTGTGTAA

Function

NR:

description
atlastin-3-like isoform X1

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K17339 ATL; atlastin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970010.1 False 3140 mRNA 0.46 14 30502069 30516383
XM_021583907.2 True 3170 mRNA 0.46 14 30502243 30516383

Neighbor

gene id symbol gene type direction distance location
LOC110504984 LOC106604710 coding upstream 1910 30496632 ~ 30500159 (+)
LOC110504982 yif1a coding upstream 5621 30488564 ~ 30496448 (+)
LOC110504981 LOC106611758 coding upstream 22176 30476682 ~ 30479893 (+)
LOC110504976 mrpl11 coding upstream 118829 30321823 ~ 30383240 (+)
LOC110504973 LOC106611750 coding upstream 183030 30302588 ~ 30319039 (+)
LOC110504986 LOC106611761 coding downstream 948 30517331 ~ 30524440 (+)
LOC110504990 LOC106611765 coding downstream 83646 30600029 ~ 30611248 (+)
trnaa-agc-11 NA coding downstream 136296 30652167 ~ 30706266 (+)
trnaa-agc-12 NA coding downstream 137588 30653971 ~ 30654043 (+)
trnaa-agc-13 NA coding downstream 137900 30654283 ~ 30654355 (+)
G2270478 NA non-coding upstream 74662 30382613 ~ 30427407 (+)
G2270407 NA non-coding upstream 238173 30263545 ~ 30263896 (+)
G2270388 NA non-coding upstream 270085 30231773 ~ 30231984 (+)
G2270382 NA non-coding upstream 285865 30215906 ~ 30216204 (+)
G2270553 NA non-coding downstream 8285 30524668 ~ 30524958 (+)
G2270557 NA non-coding downstream 16518 30532901 ~ 30533121 (+)
G2270573 NA non-coding downstream 26397 30542780 ~ 30543017 (+)
G2270572 NA non-coding downstream 59125 30575508 ~ 30577126 (+)
G2268400 LOC106611722 other upstream 1603990 28896755 ~ 28898079 (+)
G2268340 NA other upstream 1734340 28766877 ~ 28767729 (+)
G2266826 NA other upstream 3566180 26934720 ~ 26935889 (+)
G2266668 LOC106611853 other upstream 3881121 26588592 ~ 26620948 (+)
LOC110504416 diaph1 other upstream 4129586 26298775 ~ 26483992 (+)
G2271027 NA other downstream 660507 31176890 ~ 31181107 (+)
G2272912 LOC106611792 other downstream 2347053 32863436 ~ 32866226 (+)
LOC110505056 LOC105028844 other downstream 2899707 33328263 ~ 33421963 (+)
LOC110505080 LOC106611630 other downstream 3685700 34202011 ~ 34207415 (+)
G2274048 NA other downstream 3715612 34231995 ~ 34232604 (+)

Expression


Co-expression Network