LOC110505008 (LOC106611777)


Basic Information

Item Value
gene id LOC110505008
gene name LOC106611777
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 31183225 ~ 31186186 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583939.2
ATGTAATGCAGGGCGGGGAAGGAGTTAGAAGGATGCTTAAAGTAGCAACCTGAGAATGTTATTCCAAAACTAATGCATGGTCATATGTTTATATTTGGAGGTTACAGATTTGTCACGAATGTCCAATTCCATTTGGCGAGATTGCTTGTCTCATTTTGACAGCTCATCCAGCTAGCATTGGCGGAGACGCGGTTTTGCAAGCCGTAACAGCTCTgggttaacgttagctaggcagCTACTGTAGTTTGCTAGCATATCCTCGATAATCAATAACCAAACAATATGGAAAGTGTGGAGTCGTCGACGGAATTCACTAGTTCGCTGACTGTCTCGTCTCATCTTCCGCCACCACGGACGCGGATTTTCAAGATCATCGTGATTGGGGACTCCGGTGTGGGCAAGACATGCCTAACCTACCAATTCTGTGCGGGCAAGTTTCCAGAGAAAACCGAGGCCACGATCGGGGTGGACTTTCGGGAGAAACTTATCGAGATTGACGGCGAGAAAATCAAGGTTCAGCTATGGGACACGGCAGGCCAGGAGCGTTTCCGTAAGAGCATGGTGCAGCACTACTACCGCAACGTGCACGCTGTGGTGTTCGTGTACGACGTGACCAGTGCCGCCAGCTTCCGCAGCCTCCCGGCCTGGATCGAGGAGTGTAAGCAGCACGCTCTGGGCCAGGAAGTCCCGAGGATCCTGGTTGGAAACAAGTGTGACCTGCAGAACTCTGTCCAGGTGGGCACAGACTTGGCCCAGCAGTTTGCTGACGCCCACTCCATGCCCTTGTTCGAGACATCTGCCAAGAACCCCTGCAGCAATGGCCATGGTGACGGTAGCCCTGGTAACAGTGATCACGTGGAGGCCATTTTCATGACGGTAGCCCACAAGCTGAAGTCCCAGAAGCCACTGATACTGAGCCAGCCGCCAGGGGGGGACACGGTGACCCTGACGAGGGGAAGGGACGAGGGCGAGGAGAAGGCGAGCTGGGCCTGCATGTGCTGAGAGAGAGCATTGGGGGGAGCAAGAGAAGAAGGTTGTGGGGAGATATAGGAATCAGGGTAGATTCCTCTACTTCCAATATCAGGGTAGATCCCCCCCCTCTAACAGTTAAGCACCTTTTTATTATTTAAGTGGATGTGTGGCCACCTGAGAGATGGGGTGATGTCATCATATTACAAGAGTTTAGGTGCCCTCAGTCAACACATAATTTCACTCACCTCCTGTGCTCCACCTTGACTGTGTGTTACCACACACATGTTCTGTGTTAGGAGGTAGTCCTGACGGTGTTAGCACTGTCATCATATGGTAAACATCTCAGTGACCTGGGAAAGCTAAGGATAAAAAGGAACTTGTTTGAAGTGAATCTTGTTGACGGGTTCCACTGAACTGTGTTTGAGCTAGAAAACTGTTGGCCAGATTGATGTACAACATAttcaatttacacacacacacacacacacctcagagtATACAGCGGGCAATATCAATACACCTCACTCAGGCGTTTCTGTACCAGAATACCCATCCATCGGGTTTATAATTGTGCCCCTACGCAAGTCCCACAATATACAAAAGTTTTCTTAAGCTAAGTTATGATCTTCTGTAGCATGTCTTGCATAAGTAACTTCTATAAAACAACTATTACAATATACAAAAAAATACCAATGTATCTTAAATCTGTTCTAACTGTAACATGTTTTCTACCCTATGATGTCATCCCAAAGGCCTTCACTATCGTCACCATTGCTTTGTGCGTTTGGATCACAGCTGGTCCTGTGGTGCATCGTTTTACGTGTGTTTGTGAGAAGGATGTGTGGCACAACATTAGATCAGATCAGTTCGGTACTGTGAGTGCAGCACAGTGTGATGCTGCACAAACCACTCCGCCTGATGAGATCACTGTTGATGTGGGGCAAGACTCGTCATCATTCCCTCTTCATAATCTGCTTTGGCAAAGTCATGATGACAACTGCTATCAATGCATGGGTATCTTTATCTTTACAACAAGCCTGTAAAATGTGTCAAAAGTAGTAGTGGTGAGGAGATTGATTACCTGTATTGTTGCCGTTGAACCTTAGCTAAGAGACCTGCTTCTTTGAACATGGGACAGTTGCAAAGAAACCCCCCACCAGTGAAATGACCCTCTAATGAAGACGGTtggtgtttatgtactgtatgtcagatAACCTGGAAGTCTTGTCGTATAATTACCGTTTTTAGCCAGCAGAGAACAGATGCCACCCCACAGTATGTCCAACACAACAATTAGCTGCGCTAAAGTACTGTGGGCTTAGATAGCCTTTTCTCAGGATACAGTTCAATTAAAAGATAATCACTCTCCGACCTGTTGCCCTTAGATTGGTCTATAGAACTAGGCAAGGGGGGGAAATGGTAGGCTTTATCAATTGCCTTGCACTCTTGTTTTGCTTACATCTGCTTTAAATATTTGTGTTTCTGATGTGTTCTGTTAGTGCTCTGTGTCATTAATTTGTCATTTCAGGTTAATCAATCATTTTTTTTCTGTTCATTTTATTTCGGCTGTTTGATACAAAGGTATGTCTGTTTGAGAAAGACACTGTTTATTTTAACGAGACTGACCAC

Function

NR:

description
ras-related protein Rab-33B-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07920 RAB33B; Ras-related protein Rab-33B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583939.2 True 2601 mRNA 0.46 2 31183225 31186186
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110505004 LOC102314576 coding downstream 8116 31172148 ~ 31175109 (-)
hars LOC106611772 coding downstream 60394 31118101 ~ 31122831 (-)
LOC110504996 LOC106611770 coding downstream 90811 31073942 ~ 31092414 (-)
rap2c rap2c coding downstream 531798 30647146 ~ 30651427 (-)
zgc:92907 alg13 coding downstream 536234 30643575 ~ 30646991 (-)
LOC110505005 naa15 coding upstream 7516 31193702 ~ 31206251 (-)
LOC118946086 NA coding upstream 9058 31195244 ~ 31195378 (-)
LOC110505012 NA coding upstream 63243 31249429 ~ 31251347 (-)
LOC110505016 pcdh10 coding upstream 940110 32126296 ~ 32138798 (-)
LOC110505017 LOC106611785 coding upstream 1320827 32507013 ~ 32509252 (-)
G2271160 NA non-coding downstream 31700 31151301 ~ 31151525 (-)
G2271158 LOC106611802 non-coding downstream 35133 31146374 ~ 31148092 (-)
G2271148 NA non-coding downstream 58158 31124825 ~ 31125067 (-)
G2271146 NA non-coding downstream 67743 31115139 ~ 31115482 (-)
G2271144 NA non-coding downstream 70396 31112531 ~ 31112829 (-)
G2271182 NA non-coding upstream 2245 31188431 ~ 31189337 (-)
G2271175 ndufc1 non-coding upstream 20326 31206512 ~ 31208139 (-)
G2271189 NA non-coding upstream 22737 31208923 ~ 31209125 (-)
G2271190 NA non-coding upstream 23619 31209805 ~ 31210618 (-)
G2271161 NA non-coding upstream 50940 31237126 ~ 31237576 (-)
LOC110504988 LOC106515624 other downstream 607955 30566629 ~ 30575299 (-)
G2270673 LOC106611749 other downstream 863308 30283733 ~ 30319917 (-)
G2270186 NA other downstream 1111096 30070378 ~ 30072129 (-)
G2269291 NA other downstream 2547926 28634930 ~ 28635299 (-)
G2272324 NA other upstream 1067197 32253383 ~ 32253938 (-)
LOC110505054 LOC106611652 other upstream 2125730 33308270 ~ 33313952 (-)
LOC110505064 LOC106611642 other upstream 2512399 33693783 ~ 33765421 (-)
LOC110505071 LOC106611637 other upstream 2880509 34008192 ~ 34106811 (-)
G2275717 NA other upstream 3965732 35151918 ~ 35152583 (-)

Expression

LOC110505008(LOC106611777) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 100.
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LOC110505008(LOC106611777) Expression in each Bioproject

Bar chart with 21 bars.
LOC110505008(LOC106611777) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network