LOC110505017 (LOC106611785)


Basic Information

Item Value
gene id LOC110505017
gene name LOC106611785
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 32507013 ~ 32509252 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583954.2
CTAGTATTCGATTCCGGAAACAACGTCAGCCTTCTGTTTACATCGTAGGACGTATTCAGATAAATGTCGATGTATTGAATCTTATTTTTAGACACGTTTATACAAATAGAAACATACCTCACAATTTGTTTGATCGCAATGGGCGGTCATGGTGTGATGGCAAACGAGGAATCGTTGGATTACTCGGTGCACGAGGCGTGGAATGAGGCCACCAATGTCTATTTGCTCGTCATTCTGGTTAGCTTCGGACTGCTAATGTATGCTAGAAAAAATAAGAGGAAGATCATGAGGATATTCGCTCTGCCCCCCACAGCTGGAGCCACGACCGAACCGAACTTCTATGACAGCCTGCAGAAAGTGAGACTCCGCCAGCAGCTGGAGATGTACTCTCTTGCGAGGAAGTTTGACCAGCATCAACACCAAGGCCAGAGTGAGAGTGTTCAGCTCTCTATGGAATGAGACTACAACAACAAGGTAGCATGGCCCATCATCGtgcctgtctctccatccctaaGCCTCTTTGTCTTTGCTAAGTCTCATCATTACTACACTCCTGAAGTCGGCATGGGTACCAAGGAGGAAGAAGTCGAGGGTCAAGGAAGGTTTCTGTAATTATGACGTGTCAAATCGTTTGTGTTTGCACAAGTTGTTGCTGTACGATTTGAAACAAGGACTATAATGGATTTGGGTATGAAGAATTACTGGATGTTCCCCCTGCaacatctgttttttttgttgtttttttttcatttcttTTGTCTTTTGTATGTATTTTATTAgtaatttttgtattttattcaatTCCTTATTGGATTATGTGTGGATTTGTCGCCCCATAGTGGTTTTAGGAGAACCTCCATCCAGTGTTCAATATACATCCTGTACAGTGACAATTCAAATAAGTCTTaaacttgtaaaaaaaaatataaatatatatatattacaacaaTAACCATTTCATTTAGCATATCTATTTAAATGTTTGGTTGTCAAGAACTGTTTCATTTCCCAGTTTCTGATCCTCCTATAGATTCCTTATTATGGCATTACTGCTGGGAAAGCTTAAAAGTGTTGAGAGTTGACTTTTACCCAATCCACTTGCTTTTTCTAAAAAGGAAATGAATTGCTATTATTACTCTGGttcaaaataaatttaaaaaacaagggaCCAATGAAGGACCAAGGAA

Function

NR:

description
small integral membrane protein 19

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583954.2 True 1187 mRNA 0.39 3 32507013 32509252
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110505016 pcdh10 coding downstream 368215 32126296 ~ 32138798 (-)
LOC110505012 NA coding downstream 1255666 31249429 ~ 31251347 (-)
LOC110505005 naa15 coding downstream 1300762 31193702 ~ 31206251 (-)
LOC118946086 NA coding downstream 1311635 31195244 ~ 31195378 (-)
LOC110505008 LOC106611777 coding downstream 1320827 31183225 ~ 31186186 (-)
LOC110505019 LOC106611786 coding upstream 28496 32537748 ~ 32614415 (-)
chrnb3a LOC106611787 coding upstream 109367 32618619 ~ 32629538 (-)
LOC110505020 LOC106611788 coding upstream 139018 32648270 ~ 32671869 (-)
LOC110505023 LOC106611789 coding upstream 178025 32687277 ~ 32711042 (-)
LOC110504155 LOC106611790 coding upstream 310312 32819564 ~ 32840207 (-)
G2272633 NA non-coding downstream 13117 32405133 ~ 32493896 (-)
G2272601 NA non-coding downstream 83027 32367965 ~ 32423986 (-)
G2272441 NA non-coding downstream 157674 32349120 ~ 32349339 (-)
G2272435 NA non-coding downstream 159813 32346955 ~ 32347200 (-)
G2272434 NA non-coding downstream 160270 32346527 ~ 32346743 (-)
G2272681 NA non-coding upstream 24046 32533298 ~ 32533867 (-)
G2272768 NA non-coding upstream 112495 32621747 ~ 32621978 (-)
G2272816 NA non-coding upstream 165138 32674390 ~ 32674605 (-)
G2272324 NA other downstream 253075 32253383 ~ 32253938 (-)
LOC110505004 LOC102314576 other downstream 1331962 31172148 ~ 31175109 (-)
LOC110504988 LOC106515624 other downstream 1931743 30566629 ~ 30575299 (-)
G2270673 LOC106611749 other downstream 2187096 30283733 ~ 30319917 (-)
G2270186 NA other downstream 2434884 30070378 ~ 30072129 (-)
LOC110505054 LOC106611652 other upstream 802664 33308270 ~ 33313952 (-)
LOC110505064 LOC106611642 other upstream 1189333 33693783 ~ 33765421 (-)
LOC110505071 LOC106611637 other upstream 1557443 34008192 ~ 34106811 (-)
G2275717 NA other upstream 2642666 35151918 ~ 35152583 (-)
LOC110505098 LOC106611615 other upstream 3084173 35593425 ~ 35600758 (-)

Expression

LOC110505017(LOC106611785) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110505017(LOC106611785) Expression in each Bioproject

Bar chart with 21 bars.
LOC110505017(LOC106611785) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
End of interactive chart.

Co-expression Network