Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110505023 |
| gene name | LOC106611789 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050571.1 |
| NCBI id | CM025858.1 |
| chromosome length | 44108611 |
| location | 32687277 ~ 32711042 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| id | name | namespace |
|---|---|---|
| GO:0034220 | ion transmembrane transport | biological_process |
| GO:0006812 | cation transport | biological_process |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021583958.2 | False | 3827 | mRNA | 0.51 | 5 | 32687277 | 32711042 |
| TU2599728 | False | 1344 | lncRNA | 0.45 | 1 | 32687277 | 32688620 |
| TU2599729 | True | 427 | lncRNA | 0.45 | 1 | 32688243 | 32688669 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110505020 | LOC106611788 | coding | downstream | 15408 | 32648270 ~ 32671869 (-) |
| chrnb3a | LOC106611787 | coding | downstream | 57739 | 32618619 ~ 32629538 (-) |
| LOC110505019 | LOC106611786 | coding | downstream | 72862 | 32537748 ~ 32614415 (-) |
| LOC110505017 | LOC106611785 | coding | downstream | 178025 | 32507013 ~ 32509252 (-) |
| LOC110505016 | pcdh10 | coding | downstream | 548479 | 32126296 ~ 32138798 (-) |
| LOC110504155 | LOC106611790 | coding | upstream | 108522 | 32819564 ~ 32840207 (-) |
| LOC110505024 | LOC106611791 | coding | upstream | 129480 | 32840522 ~ 32846663 (-) |
| LOC110505026 | LOC106611792 | coding | upstream | 144791 | 32855833 ~ 32867907 (-) |
| LOC110505025 | LOC106611679 | coding | upstream | 156998 | 32868040 ~ 32884937 (-) |
| LOC110505028 | stx3 | coding | upstream | 178396 | 32889438 ~ 32912507 (-) |
| G2272828 | NA | non-coding | downstream | 2694 | 32684004 ~ 32684583 (-) |
| G2272824 | NA | non-coding | downstream | 4481 | 32682581 ~ 32682796 (-) |
| G2272822 | NA | non-coding | downstream | 5641 | 32681434 ~ 32681636 (-) |
| G2272816 | NA | non-coding | downstream | 12672 | 32674390 ~ 32674605 (-) |
| G2272965 | NA | non-coding | upstream | 6854 | 32717896 ~ 32732680 (-) |
| G2272966 | NA | non-coding | upstream | 14434 | 32725476 ~ 32752603 (-) |
| G2273028 | NA | non-coding | upstream | 219876 | 32930918 ~ 32931218 (-) |
| G2273030 | NA | non-coding | upstream | 220349 | 32931391 ~ 32933965 (-) |
| G2273029 | NA | non-coding | upstream | 223012 | 32934054 ~ 32935228 (-) |
| G2272324 | NA | other | downstream | 433339 | 32253383 ~ 32253938 (-) |
| LOC110505004 | LOC102314576 | other | downstream | 1512226 | 31172148 ~ 31175109 (-) |
| LOC110504988 | LOC106515624 | other | downstream | 2112007 | 30566629 ~ 30575299 (-) |
| G2270673 | LOC106611749 | other | downstream | 2367360 | 30283733 ~ 30319917 (-) |
| G2270186 | NA | other | downstream | 2615148 | 30070378 ~ 30072129 (-) |
| LOC110505054 | LOC106611652 | other | upstream | 600874 | 33308270 ~ 33313952 (-) |
| LOC110505064 | LOC106611642 | other | upstream | 987543 | 33693783 ~ 33765421 (-) |
| LOC110505071 | LOC106611637 | other | upstream | 1355653 | 34008192 ~ 34106811 (-) |
| G2275717 | NA | other | upstream | 2440876 | 35151918 ~ 35152583 (-) |
| LOC110505098 | LOC106611615 | other | upstream | 2882383 | 35593425 ~ 35600758 (-) |
| G2272841 | NA | non-coding | upstream | 5209 | 32693878 ~ 32707272 (-) |
