LOC110505027 (LOC106611793)


Basic Information

Item Value
gene id LOC110505027
gene name LOC106611793
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 32851302 ~ 32855758 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583964.2
ACCTAGTGGTGGTACATTTGCCTCAGTAAGCCACTACACTGCTTCATCATTCTCTAAGTCCCTATACTGCCcgaggactgagggagagaggagacgatAAGCTAAATCAATGAATCACACAAAATGATTCTGCAGGAGTAAATGTTCTGAGTGAATCGTTCCAGTGGTGGACTGGGTCACAGAGGGCTATCTCAGGGACCCAATTGGTCTGGGTTATAGTGAACTGAACTAGAACGAACCGACCTGACTTGAACCCGGGAATAAGTAGGATCATGGCAGAATCTCCTGTAGGGGTGTACAAGAGGAGGGACACCATCACAGCTCTACCTCTGTACTATTCAGGACACCTGCTGAAGAAATACACTGGAGAGAAAGACTTCAAGAATTGTTATGGAGAGCTCCGTGGATCTACAATCTTTCTGTACACAGACCAGATGCACGACACATACTCAGAGAAACTGGACCTTCAGATGTTGAAGTCGATGGTGATGGATGCTCCCTATCAAAAGAACAGGTCGACCATCTACACTCTCACCCTGTCCAATGAGGAAGTGCAGCTTAAGGTGGATAACCCCAacacaggagaggagtggagaggtttCATCATGACTGTGGCCACTAGGGAGATCCCCAGTAAGCTGCAGCTGCTCCCAGGTCAGATACTGAGGCTGGAAGAGGTTCTGTCTGAGGAGCAGAAGAGACAGGCCGCCTGTTCTCCTCTGCTTACCACCACCTATcctatccatccctcctcctccccaggcaACACATATGACAACACCCTCAATGGAATCCCCCTctgTTTCTTCCCCGTGTCTCGTCAGAAGGCAGAGAAGATGTTGAAAGAGAACACAGAGTACGGCAACATCATCCTCCGTCCCTCGACCGACAACACTAACTACGCCATCACCTTGAGACAGGACAACCCCAGTGGCCCGGTGATGAAGAGCTACAAAGTGCTTTCCATAGACACAGGCTTCGTCATAGAACTAAATTCCCCGGTGACTGTCCCTTCCCTGGCGGCGGTGCTAGACCACTTCCTGATGGAGACAGAGTTCCGTCTGCAACCATACCTGGTTCCGCAGACCTACGACACCTGCATTGAGCTGCCACCCGAAAAGCCCACTTTGCCATCCAAAACAGTCCCGAGGGCAAGAGTGGCACCGATGATCCACACACAGTCCCCGGCGGGGGACATCCCTCCCTCCTATCCCATACCCCTAATTCCAACCAAAGCCACGGAGGCAGGGAATGAATATCAGGACGCAGATGACATATCagGCCCCGAACCTAAAGATCTGCATCAGGAGCTTCGCATAGCAGTACAGAGGAGGAAGGAGCAGATCTACACTGGGTCACCGTTTTTACGCCCTATACAAAAATAACACGCCCCAACAGCAGTACGGTCAAAATGTCACAGAGGAAAACGCCCTCCAGTGTAATCTTGTCTAAATCCCCACGTAGCTACGTCATCTACTGTATCTAGCATGGTTTCATGTCTGACATAAATTGGTTGAGGCACTATACAAGCACGGGACTTTGTACCATCAAGTCCCAATGGCAAGGCAACATCCTGAAAATCCTCCGTGTGCCAACGCGTGAAGAACGGGCTTCAGTGAATGACATCTAATTCAAACGACTTTTTCAAATAAGCCCCACAAAAAGAGAAACTAATCAAGTTTAAACTGTAGTGATATGTAAATATCGTCTTGTTTGTATTGTTTGAATCATGCTGCCTTTTTAAAATTTAATTTTTTACAGCTCATGCTTCTCTCGAGTTGAAAATAACACAATGTTATATAGATTCTGTGTAATATCATTTTGCATAAAAA
>XM_021583965.2
TGGGAATAAGGAATCgtagagagagaacgacagactGTAAGcacgagggagagaggagagaatgaaaaGGATAGTGAACTTATCAAAGTTAGATTTATAATTAGGACTTCAAGAATTGTTATGGAGAGCTCCGTGGATCTACAATCTTTCTGTACACAGACCAGATGCACGACACATACTCAGAGAAACTGGACCTTCAGATGTTGAAGTCGATGGTGATGGATGCTCCCTATCAAAAGAACAGGTCGACCATCTACACTCTCACCCTGTCCAATGAGGAAGTGCAGCTTAAGGTGGATAACCCCAacacaggagaggagtggagaggtttCATCATGACTGTGGCCACTAGGGAGATCCCCAGTAAGCTGCAGCTGCTCCCAGGTCAGATACTGAGGCTGGAAGAGGTTCTGTCTGAGGAGCAGAAGAGACAGGCCGCCTGTTCTCCTCTGCTTACCACCACCTATcctatccatccctcctcctccccaggcaACACATATGACAACACCCTCAATGGAATCCCCCTctgTTTCTTCCCCGTGTCTCGTCAGAAGGCAGAGAAGATGTTGAAAGAGAACACAGAGTACGGCAACATCATCCTCCGTCCCTCGACCGACAACACTAACTACGCCATCACCTTGAGACAGGACAACCCCAGTGGCCCGGTGATGAAGAGCTACAAAGTGCTTTCCATAGACACAGGCTTCGTCATAGAACTAAATTCCCCGGTGACTGTCCCTTCCCTGGCGGCGGTGCTAGACCACTTCCTGATGGAGACAGAGTTCCGTCTGCAACCATACCTGGTTCCGCAGACCTACGACACCTGCATTGAGCTGCCACCCGAAAAGCCCACTTTGCCATCCAAAACAGTCCCGAGGGCAAGAGTGGCACCGATGATCCACACACAGTCCCCGGCGGGGGACATCCCTCCCTCCTATCCCATACCCCTAATTCCAACCAAAGCCACGGAGGCAGGGAATGAATATCAGGACGCAGATGACATATCagGCCCCGAACCTAAAGATCTGCATCAGGAGCTTCGCATAGCAGTACAGAGGAGGAAGGAGCAGATCTACACTGGGTCACCGTTTTTACGCCCTATACAAAAATAACACGCCCCAACAGCAGTACGGTCAAAATGTCACAGAGGAAAACGCCCTCCAGTGTAATCTTGTCTAAATCCCCACGTAGCTACGTCATCTACTGTATCTAGCATGGTTTCATGTCTGACATAAATTGGTTGAGGCACTATACAAGCACGGGACTTTGTACCATCAAGTCCCAATGGCAAGGCAACATCCTGAAAATCCTCCGTGTGCCAACGCGTGAAGAACGGGCTTCAGTGAATGACATCTAATTCAAACGACTTTTTCAAATAAGCCCCACAAAAAGAGAAACTAATCAAGTTTAAACTGTAGTGATATGTAAATATCGTCTTGTTTGTATTGTTTGAATCATGCTGCCTTTTTAAAATTTAATTTTTTACAGCTCATGCTTCTCTCGAGTTGAAAATAACACAATGTTATATAGATTCTGTGTAATATCATTTTGCATAAAAA

Function

NR:

description
signal-transducing adaptor protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583964.2 False 1832 mRNA 0.48 10 32851302 32855758
XM_021583965.2 True 1562 mRNA 0.48 10 32851700 32855758
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110505015 pcdh18 coding upstream 1239909 31604683 ~ 31611393 (+)
LOC110505014 LOC106611782 coding upstream 1435776 31404753 ~ 31415526 (+)
LOC110505011 LOC106611780 coding upstream 1605117 31238912 ~ 31246185 (+)
LOC110505010 LOC106611779 coding upstream 1616662 31217229 ~ 31234640 (+)
ndufc1 ndufc1 coding upstream 1643155 31206566 ~ 31208147 (+)
LOC110505032 LOC106611681 coding downstream 75083 32930841 ~ 32941664 (+)
LOC110504156 LOC106611678 coding downstream 129448 32985206 ~ 33000002 (+)
LOC110505037 LOC106611663 coding downstream 179900 33035658 ~ 33079748 (+)
LOC110505039 LOC106611665 coding downstream 230157 33085915 ~ 33089436 (+)
LOC110505043 LOC106611661 coding downstream 287322 33143080 ~ 33153275 (+)
G2272893 NA non-coding upstream 18295 32829837 ~ 32833007 (+)
G2272885 LOC106611790 non-coding upstream 27949 32822163 ~ 32823353 (+)
G2272858 NA non-coding upstream 51705 32718113 ~ 32799597 (+)
G2272873 NA non-coding upstream 60529 32782249 ~ 32790773 (+)
G2272866 NA non-coding upstream 82914 32751716 ~ 32768388 (+)
G2272905 NA non-coding downstream 1225 32856983 ~ 32857484 (+)
G2272910 NA non-coding downstream 5117 32860875 ~ 32862227 (+)
G2272912 LOC106611792 non-coding downstream 7678 32863436 ~ 32866226 (+)
G2272942 NA non-coding downstream 61820 32917578 ~ 32918418 (+)
G2272943 NA non-coding downstream 66365 32922123 ~ 32922768 (+)
G2271027 NA other upstream 1670195 31176890 ~ 31181107 (+)
G2268400 LOC106611722 other upstream 3953223 28896755 ~ 28898079 (+)
G2268340 NA other upstream 4083573 28766877 ~ 28767729 (+)
G2266826 NA other upstream 5915413 26934720 ~ 26935889 (+)
G2266668 LOC106611853 other upstream 6230354 26588592 ~ 26620948 (+)
LOC110505056 LOC105028844 other downstream 560332 33328263 ~ 33421963 (+)
LOC110505080 LOC106611630 other downstream 1346325 34202011 ~ 34207415 (+)
G2274048 NA other downstream 1376237 34231995 ~ 34232604 (+)
nudt6 nudt6 other downstream 2068200 34923553 ~ 34939399 (+)

Expression

LOC110505027(LOC106611793) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC110505027(LOC106611793) Expression in each Bioproject

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LOC110505027(LOC106611793) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 2500.
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Co-expression Network