LOC110505025 (LOC106611679)


Basic Information

Item Value
gene id LOC110505025
gene name LOC106611679
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 32868040 ~ 32884937 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583962.2
tgtgtgtgtgtgtgtgtgtgtgtgtgtgttttatgctcAGCTGAAAATGGCGGATCGAAGCAGATCGCTTTAACTTTATCGCACAATAACCAGGATAACAAACTACAAAGCTAAAAATATATACAAAGTTCAGCGATAACTTCTAGACGCCGCGCTACGGCATAACATACAGACCACAACAACCCAATGAGTTATTTCAGTGGGAAACTTATCTAAAAAATAATACGTTAGCCATTTTCCGAttaggaagctaacgttagcgcaatgatggctaactagctaacgttccGTGAATGAAGACGCTAACgtcatggAAGACCAAAACCCCCGTTACAGCAAGCGCTTGCGTACGGGGACGCGGCGGCGCTACCTCGATGACGGGATCTCGGACGATGAGATTGAGGGGAAGAGGACCTTTGACCTGGATGAGAAGCTGCAGAGTGACCGGTTCAACTCCAACCTGGTTAAACACATGGAGGGAAAAGACTTCACGTTCGAGTACATccagagagaggggctgagagacCCTCTGATCTTTGAGAAAAAAGACGGCCTCGGCTTAGAGATGCCAGACTCTGATTTCAGTGTGAGTGACGTCAAGCTGTTTGTAGGCAGTCGGAGGATGGTCGACGTTATGGATGTGACCACTCAGAAGGGCATCGAGATGTCCATGGCCCAATGGCGGCGGTACTACGAGACCCCGCCTTCGGAGCGAGATAAGCTCTATAACGTCATCAGCCTGGAGTTCAGTCACACCAAGCTGGAGAACCTGGTGAAACGACCCGCCTCGgtGGATTTGATCgactgggtggacaacatgtGGCCAAGGCACCTGAAGGAGCGACAGAGAGACTCAACCAACTCCATCATAGACATGCAGTATCCCAAAGTGCAGAAGTACTGTCTGATGAGTGTCCAGGGCTGCTTCACAGACTTCCACGTTGACTTTGGTGGTACGTCGGTCTGGTACCACATCCTGCGGGGGGGCAAGGTGTTCTGGCTGATCCCACCCACACCCCAGAACCTGGAGCTGTATGAGGACTGGGTGTTGTCAGGGAAACAAGGGGACATCTTCCTGGGAGACAAGGCTCGGGACTGTCAGAGGATTGAGCTGAAGCAGGGCTATACCTTCATGATCCCCTCTGGTTGGATCCATGCTGTGTACACCCCTGAGGACACGCTGGTGTTTGGGGGAAACTTCCTCCACAGCTTCAACATCCCCATGCAGCTCAACATCTACAACATCGAGGACCGCACACGAGTCCCGGCCAAGTTCCGATACCCCTTCTACTATGAGATGTGCTGGTACGTGCTGGAGAGATACCTCTACTGTCTGACTAACACCTCTCACCTCACCCCTGAGTTCCAGAAGCACTCGCTTGGTGTTGGTCTGACTCGAGACTCCTCGGAGAACAAACTCAACGGCCACGTGAAAAACGGCACGTCGGAGGAGAATAAAGACAGAGACGATgatgaggaaggaaaggaggaggaaagggagagcaaGGTCAAAATGGAAGAGAGCGACGAGGATGTCTCCCCCGCTCTGGGTGCCACTAAGCTGGGGGTGAGGGTAAACCTGACCCCCCTGGAGCTGGAGGGGCTGTGGAACCTGCTGGGGAAGCTGGAGGAGCTGCCAGCCCACAAGAAGTGTGTCCCCGCAGGCATCCGCAACGCCCCCGCCCTGCTCCACGACATACGGGCTCTTCTGGAAGACCACCGCAACGACGACCCCAAGCTGTCTTACACTGGGAAGCCCATCGTCAAGTGGCCCAAGAGGCCGTCGTGGTACCGGCCCCCTTCCCCCTCGCCGGTGGACCGCCCGCGCCTGGCCACGCCCCACAAGCCCGCGGTCCCGCGCCCGGCTCGGGCCGCCACCTCACTCTCGGCCCTGAGGCGGCGGCGCGTGCGCTGCAAACGCTGTGCGGCCTGCCAGAGGGAGGAGTGCGGCGAATGCAACTTCTGCAGAGACATGAGGAGGTTCGGAGGACCCGGGCGCATGAAGAAGGGCTGCATGATGCGGCAGTGTCTGGCTCCTGGCCTGCCCAACTCGgcggtgtgtgttctctgtggaGAGGGCCAGGGGAAGCAGGAGCTGGCGGACGCTAGCCCATCCTCCACAACCCTGATGGAATGCTCTAACTGTGCTCAGATCGCCCACCCCGACTGCATCAAGGTGCCAGGGGAGGGCAGGATCAACAAGGACCTGCCCAGCTGCTGGGAGTGTCCCAAATGTTACCAGGACAAAGATGGCTCCTCATCAGAGTCGTCCAGCAGTGATGAGGACAGCATGGCGTCTACAGGTTCTCTCACTACGTCAAAGCATGCCCACTGGGAAGGGATAGGAGTAGAGGAGGCAGGAGGTGGGGTGAGGAAGGGGCGACGTGGCAGACCCCCCCTGACGTCCTCTCTGTCCCAGCGGAGGGCGCCCCCTCCCTCTCAGCGGCTGCTACTGCAGCAACAACAGAACAGGAAGAGAGCCGGTGCACTGGAGCTACGACTCCggaagagtATCAAACTGGAGCGCAGCAAAATCTTACAGTCGAAGCAGACGTCATCTCTGGAGCGTTCTCACAAGCTCCTGGGCTCCCAGCGTCTGGCCCACCTCCAGAGAGAGGTGTCCTCTCGCCTTCACTCCCCCGTCGGCAGACTGTCCCGGGGCCGTGGGTCCTTCAGAGGCTCCCCTACAGGGGCACGACTCCAGCCCCCCCAACCCTCCCTCAGCCTGGACCCCGCAGGCAGGGGAGATGGGCGCAGGGGGCAAGGGCGAGGAGTAAGGCTCAGAGGAGGAGCAGcaggaagaggacagagacacggtggagcagaggaagagagtgatagcagtaccagcagcagcagcagcagtagttgtagtagtgatgaggaggagaacagggagaacagCGTGCGGAGTGGCAGAGGGGACAAAGAAAACCGTCCGCAGAGACGAGTAACAgccaaagaagatgaggggagtGGGGAGTCCAACCAAAACGAAGAAGAAGCAGAGGAGGCGGCGATGGATGAAGactggagagaaggaggacaggCACAGGCGGAGCCACCGGTCCTCGTAGTTTCTGACATTAGCGACGACCTCATGAAGGGCTCGTATCTCACTGTGACCCTTCAGCCGTCGAGGGCCAAACATGATCCAGGGGCCATCGTCCCCAAACTGGAGGCTGCAGTCACCCCCCGCCCTGCCCCTCCCGGACAGATTTACACACAACGCAAGAATCTTGCCCGACCACCCCTCAGGAACCACACCCCAGACCCTGCACGctcagatagacacacacacatccgggAAAGCAACATACACACTGGCGGCTCCCATGAAGACGAGAGGAGAACGAGGCCGGGCAGACCAGAGAGGACAAACAACAGTGCTTCCTCCTCCCGGGTTCCTCCTCTACACCTCCCTCTGTCGGCTTTACACaatggggagagggaggtggcGAATGGAGGGAGTGAACCGGGCTGTGAGAGGGAGGTGTGGGTATCAGTCTTCCGTTACCTGACTCGTGCTGAGCTCTGTGTCTGCATGGCCGTCTGCAAGAACTGGTACAAATGGAGCCTGGATAAGAGGCTGTGGATGAGGATCAATCTGACCGTGTCTAAAGCAATCAGTCCTCAGGCCCTGTCGGGCATCATCAAACGCCAGCCAGTCGCTCTGGACCTCTCCTGGACCTCCATCTCCAAGAAACAACTCACGTGGCTCGTCAACCGCCTGCCagGGCTGAAGGATCTCATGTTGTCTGGGTGCTCCTGGTCTTCTATTTCGGCTCTGAGCTCGACCAGTTGCCCCCTCCTGCGCACGCTGGACCTGCGCTGGGCCGACGGGGTGAAAGATGGACAGATCCGAGACCTGCTCAACCCCCCAGggtGTGATAACCGCAGTCAGCTGAGGAACATGCAGTCTTTCCGTCTGGCAGGGCTGGAGATCAGTGACTCCACTCTGAGGCTGGTGATCAGACACATGCCCCTGTTGACCCGTCTGGACCTGTCCCACTGCGGAGGCCTCACGGACCAGTCCATCAACCTGCTCACTGCCGTGGGCTCCTCCACACGCAACACACTCACTGAGCTCAACCTGGGGGGCTGCAGTAAGCTGACGGATGCGTGTCTGCGGTACCTCCGCCGGctctcctgcctctccctgcTGGACCTGCGGGAATGCAAGGGTGTCTCCCGCAAAGCCTGCGAGGCTTTCATCTCGGAGCTGTCCGTCAACACCCTCTACTGCCTATCAGAGGACAAGCTGATCCAGAGGATATCCTAGAGGCCCGCCGCCTCTGTCTGGGACAGGGGGGTTACAGGGAGAGGTCGGGTACAGAGAAAAGACTGTAGAAGAAGGACAAGGGAGGCCTAATAATCCCCCACACTCTCAAAGGGAGCAGGAGGGTGATTAGTTACTACACACTTAGTGGGAGAAGGGTTTCTTTCCatgttgtatatatttttttgactaAACCAGACATGAGACTCAGGTGTTTGCGTTCAGGCGCCGACGCTACGTGATTAAAGTGGGGAGGTCGGGGGTTCCCGTGAAGGTGGCAGGGGGTGCTAGGTGTCATGCCCGACAGGGTTCCCTCCTTACCCTAGTGGTTCTAAGTGCTTTATGACAGGCCGTCTCTAACCCAAAAGGTGTTGGTTGTGGACTAACTCTTCCAGGAGTACTTTGGTCAGGTCGCCCCAtcctgagacagaggggtgcgcCTATGAAGGATTCAGGGACGGCGCGAGAGGGCAATCGACGTGATGACGAGACCAAAACAAGGGCGGGGTATGAAtgaaagggagaaagggggggggTGACAGGGTAAATGGTGCGCTCTCAAACAACAGTTAGAATTCAGGTGCTATCACTCCCAAAACTCTCCCTGTTTTGTACAAATATAAATCTAGGACAACTGTCTCTATTTTAGGAAATGCCCCTCACCCCACTTTGATGCATTTTCTGTTTCCCATGGATAAAATGTGAGTTCCTTTCCGTTTCACCTGATAAGATTCAGTGTAAAAATGTATGATTTGCGGTCATTATTCTGCCCTGTTACCATTCAGCCTAGTGCTTCTAATGGATACTTATTTCTTACCCACCTCACTGCCAAATCTAAAAAGAATATAAATATGTACTTTTGTTTAAATGTTTCCCTATTTTAGAAGATGAAGAGAAAATCCTGTAGCATTGTAATTATTTTCAGAAATCTTTTTCActtatgttattattattattttttagaaAATTAAAAATTTAAGATCAACTGTG

Function

NR:

description
lysine-specific demethylase 2A-like

GO: NA

KEGG:

id description
K10276 FBXL10_11, KDM2; F-box and leucine-rich repeat protein 10/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583962.2 True 5269 mRNA 0.55 23 32868040 32884937

Neighbor

gene id symbol gene type direction distance location
LOC110505026 LOC106611792 coding downstream 133 32855833 ~ 32867907 (-)
LOC110505024 LOC106611791 coding downstream 21377 32840522 ~ 32846663 (-)
LOC110504155 LOC106611790 coding downstream 27833 32819564 ~ 32840207 (-)
LOC110505023 LOC106611789 coding downstream 156998 32687277 ~ 32711042 (-)
LOC110505020 LOC106611788 coding downstream 196171 32648270 ~ 32671869 (-)
LOC110505028 stx3 coding upstream 4501 32889438 ~ 32912507 (-)
LOC110505029 ran1 coding upstream 32636 32917573 ~ 32921779 (-)
LOC110505031 LOC106611680 coding upstream 37186 32922123 ~ 32930503 (-)
LOC110505033 NA coding upstream 56759 32941696 ~ 32947758 (-)
LOC110505034 LOC106611683 coding upstream 67868 32952805 ~ 32964288 (-)
G2272966 NA non-coding downstream 115437 32725476 ~ 32752603 (-)
G2272965 NA non-coding downstream 135360 32717896 ~ 32732680 (-)
G2272841 NA non-coding downstream 160768 32693878 ~ 32707272 (-)
G2272828 NA non-coding downstream 183457 32684004 ~ 32684583 (-)
G2273028 NA non-coding upstream 45981 32930918 ~ 32931218 (-)
G2273030 NA non-coding upstream 46454 32931391 ~ 32933965 (-)
G2273029 NA non-coding upstream 49117 32934054 ~ 32935228 (-)
G2273032 NA non-coding upstream 52360 32937297 ~ 32958581 (-)
G2273045 NA non-coding upstream 81635 32966572 ~ 32966778 (-)
G2272324 NA other downstream 614102 32253383 ~ 32253938 (-)
LOC110505004 LOC102314576 other downstream 1692989 31172148 ~ 31175109 (-)
LOC110504988 LOC106515624 other downstream 2292770 30566629 ~ 30575299 (-)
G2270673 LOC106611749 other downstream 2548123 30283733 ~ 30319917 (-)
G2270186 NA other downstream 2795911 30070378 ~ 30072129 (-)
LOC110505054 LOC106611652 other upstream 426979 33308270 ~ 33313952 (-)
LOC110505064 LOC106611642 other upstream 813648 33693783 ~ 33765421 (-)
LOC110505071 LOC106611637 other upstream 1181758 34008192 ~ 34106811 (-)
G2275717 NA other upstream 2266981 35151918 ~ 35152583 (-)
LOC110505098 LOC106611615 other upstream 2708488 35593425 ~ 35600758 (-)

Expression


Co-expression Network