LOC110505035 (LOC100286423)


Basic Information

Item Value
gene id LOC110505035
gene name LOC100286423
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 32971709 ~ 32983276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969620.1
CATCAAGTTTGTTCGTTTTTATTCAGGGACGAATGTAGCGGATTCTAAGTAGCTGGGTAGACAACCAAACAGATGAGACCAGTAACATTGACCTAGCTACTATTGACCCATTGGAGTCAAATAGTTAGCGAAGAAACGCCACATAATCACTAGCCGGCTAACGTTAACATGCTAGCCACACTGGCATCCAGTTACTAGCCACATCGCTACGAATGGCCAGCCAACTATGTTGAACACCACTTCTCGTGGAGGCAGAGATGGGAGACACGCTTGAGTTCAACGAGATCTACCAGGAATCCAAGGGGTCCTGGAACGACGGTCGTCTGAGGTTCAGTAAGCAGAATGTGGTGTATAAGAGCAGTAAGACGGGGAAGGTGGACAACATCCCGGCAGCAGAGCTGTCCCAGGCCACGTGGAGGCGTGTGTGCCTGGGACACGGCATCAAGCTGGCCACCAGCACCGGACATGTCTACAAATATGACGGCTTCAGAGACACGGATTATGAGAGGATCTCGGAGTTCTTCAAGGCCAACTACAAGGTGGAGCTGACAGAGAAGGACATGTGTGTGAAGGGCTGGAACTGGGGCACTGCTAAATTCTCTGGTCCATTGTTGTCATTTGACGTGAATGACAGCTCCGTGTTTGAGATCCCCCTGGCCAGCGTGTCCCAGTGTGCCACCGGGAAGAACGAGGTGACGCTGGAGTTCCACCAGAACGATGACGCTGAGGTCTCTCTCATGGAGGTCCGTTTCTACGTCCCCCCCGGCCCCGCAGACGAGGGGGCAGACCCCGTGGAGGCGTTTGCCGCGAATGTGCTGTCTAAGGCCGATGTGATCCAGGCTACAGGAGATGCTGTGTGTGTCTTCAAAGAGCTGCAGTGCCTCACACCCAGGGGCAGgtATGATATCCTCATCTACCCCGccttcctccacctccatggTAAGACGTTTGACTACAAGATCCCCTACACCACCGTGCTGCGTCTCTTCCTGCTTCCACACAAGGATCAGAGACAGATGTTCTTTGTGATCAGTCTGGACCCGCCCATCAAGCAGGGGCAGACCCGTTACCACTTCCTCATCCTGCTCTTCTCTAAGGAGGAGGAGCTCCGCCTCACCCTCAACATGAGCGAggaggaggtggagaagcgTTATGAAGGGAAGCTCAGTAAGAACATGTCAGGTTCTCTCTATGAGATGGTCAGCAGGGTGATGAAGGCTCTGGTCAACAGGAAGATCACCGTGCCCGGAAACTTCCAGGGGAACACCCCAGGGGCCCAGTGTATAACGTGTTCCTACAAGGCACAGTCCGGCCTGCTCTACCCACTGGAGAGGGGTTTCATCTACGTGCATAAGCCGCCCGTCCACCTGCGCTTCGAGGAGATCTCCTGTGTCAACTTCGCCAGAGGCACCACCACCACGCGCTCCTTCGACTTCGAGGTGGAGACCAAGCAGGGGAACCAGTTCACCTTCAGCAGCATCGAGAGGGAGGAGTACGGGAAGCTGTTTGACTTTGTCAACGCCAAGAAACTCAACATCAAGAATAGAGGATTCAAGGAGAAGAAGggcATGAAGAGTAAGAACAACGAGTACAGTGACTCCGATGAAGACCAGCACGATGCCTATCTGGAGAGGATGAAGGCTGAGGGCAAgatcagagaggagggagacggcAGCAACGACTCCGATGAAGACACCGATGAGTCTTTCAACCCTGGGGAGGAGAGTGATGTTGCTGAGGAgtaTGACAGTAACGCCTCAGAGAGTGAAAGCGGCAGCGGAGGTGATGGCAGCGATGACGAGGGAAAGAAGAAGACTGCAAAGAAGGCCAAAGTAGTGAAGGAGAGGAAGCCACGCaaagagaAGAAGCAGAAGGACACCAACGCCCCCAAGAGGCCGATGAGTTCCTACATGCTGTGGCTCAACTCCAGCCGCGAGCACATCAAGTCGGAAAACCCCGGAATCTCAATCACAGAGATCTCCAAGAAGGCCGGAGAGATGTGGAAACAGATAGGGAAGGACGAcaaagagGGGTGGGACAGGAAAGCAGAGGAGGCTAAGAAGAACTATGAGAAAGCCATGAAGGAATACAGAGAGAACGGTGGAGGCTCCTCTACACCCTCCAAGAAGGAGAGCAAGAAGGCAGGAGGCAAGAAGGAGGACAAGGCAGGAGGCAAGAAGAGGAAGTccgacagaggagaggaagaaaaggaGCAAGGAGGGAACGACAGTTTTAAGAGCCGAGAGTTTATCTCCAGCGAGGAGAGTTCGTCTGAGGGCGAACGGAAGAAGGCCAAGAAAGCCAAAGGCAAACCCAAGGGCAAGgaatctgaggaagaggaggaagtggtGACCACGCCCCCCAGCTCTGAGGAGGACTCTgactaaggagagggagaggggcctCGCTGGAGCTTCTGATGACATCAGAACGAACAGGGAACATTTGGACAAGTTTACACAGTGACAGGTGCTCAAAGACATGCAGATTGATacaacgctctcacacacacacacacacacactaagcgtTACATGGACCAATAACTTGTACTCTGTCTGTATGTCCAACACATTCTTAGAAAGTGAATTATTATGTACTACATTACCCATGATTCTACTGGGTTCTATTCTATTCGCCCCATGGGGATGGTTGTAGTTTAAAAGCACTGAGACATGCAGGGGTCTTCAGTCTTGAGTTTTTTTCTTGTTGCTTGTCCTTTTGACCTGTTTAGAGAAATGACGAACAGCAATTCTGTACTTTTCTTACATTTTCATTTCCATGTCatgtttgtttctttgttttcAGACAGAATGAATAAATCTTTTGTAATAAAA
>XM_036969621.1
ACCTTTGAAAAGTGTTACTTTCTGGAAAGTAGAACGAAACGGAAGTAAATTCTAAGGTAGTAGGGATTATTTCCGGTGACGTCGGCTCTTGGGCTGATGCTTCACGCGGGAAACAGCGAGGTCTCCTCATCACGTTGACATTGAACACCACTTCTCGTGGAGGCAGAGATGGGAGACACGCTTGAGTTCAACGAGATCTACCAGGAATCCAAGGGGTCCTGGAACGACGGTCGTCTGAGGTTCAGTAAGCAGAATGTGGTGTATAAGAGCAGTAAGACGGGGAAGGTGGACAACATCCCGGCAGCAGAGCTGTCCCAGGCCACGTGGAGGCGTGTGTGCCTGGGACACGGCATCAAGCTGGCCACCAGCACCGGACATGTCTACAAATATGACGGCTTCAGAGACACGGATTATGAGAGGATCTCGGAGTTCTTCAAGGCCAACTACAAGGTGGAGCTGACAGAGAAGGACATGTGTGTGAAGGGCTGGAACTGGGGCACTGCTAAATTCTCTGGTCCATTGTTGTCATTTGACGTGAATGACAGCTCCGTGTTTGAGATCCCCCTGGCCAGCGTGTCCCAGTGTGCCACCGGGAAGAACGAGGTGACGCTGGAGTTCCACCAGAACGATGACGCTGAGGTCTCTCTCATGGAGGTCCGTTTCTACGTCCCCCCCGGCCCCGCAGACGAGGGGGCAGACCCCGTGGAGGCGTTTGCCGCGAATGTGCTGTCTAAGGCCGATGTGATCCAGGCTACAGGAGATGCTGTGTGTGTCTTCAAAGAGCTGCAGTGCCTCACACCCAGGGGCAGgtATGATATCCTCATCTACCCCGccttcctccacctccatggTAAGACGTTTGACTACAAGATCCCCTACACCACCGTGCTGCGTCTCTTCCTGCTTCCACACAAGGATCAGAGACAGATGTTCTTTGTGATCAGTCTGGACCCGCCCATCAAGCAGGGGCAGACCCGTTACCACTTCCTCATCCTGCTCTTCTCTAAGGAGGAGGAGCTCCGCCTCACCCTCAACATGAGCGAggaggaggtggagaagcgTTATGAAGGGAAGCTCAGTAAGAACATGTCAGGTTCTCTCTATGAGATGGTCAGCAGGGTGATGAAGGCTCTGGTCAACAGGAAGATCACCGTGCCCGGAAACTTCCAGGGGAACACCCCAGGGGCCCAGTGTATAACGTGTTCCTACAAGGCACAGTCCGGCCTGCTCTACCCACTGGAGAGGGGTTTCATCTACGTGCATAAGCCGCCCGTCCACCTGCGCTTCGAGGAGATCTCCTGTGTCAACTTCGCCAGAGGCACCACCACCACGCGCTCCTTCGACTTCGAGGTGGAGACCAAGCAGGGGAACCAGTTCACCTTCAGCAGCATCGAGAGGGAGGAGTACGGGAAGCTGTTTGACTTTGTCAACGCCAAGAAACTCAACATCAAGAATAGAGGATTCAAGGAGggcATGAAGAGTAAGAACAACGAGTACAGTGACTCCGATGAAGACCAGCACGATGCCTATCTGGAGAGGATGAAGGCTGAGGGCAAgatcagagaggagggagacggcAGCAACGACTCCGATGAAGACACCGATGAGTCTTTCAACCCTGGGGAGGAGAGTGATGTTGCTGAGGAgtaTGACAGTAACGCCTCAGAGAGTGAAAGCGGCAGCGGAGGTGATGGCAGCGATGACGAGGGAAAGAAGAAGACTGCAAAGAAGGCCAAAGTAGTGAAGGAGAGGAAGCCACGCaaagagaAGAAGCAGAAGGACACCAACGCCCCCAAGAGGCCGATGAGTTCCTACATGCTGTGGCTCAACTCCAGCCGCGAGCACATCAAGTCGGAAAACCCCGGAATCTCAATCACAGAGATCTCCAAGAAGGCCGGAGAGATGTGGAAACAGATAGGGAAGGACGAcaaagagGGGTGGGACAGGAAAGCAGAGGAGGCTAAGAAGAACTATGAGAAAGCCATGAAGGAATACAGAGAGAACGGTGGAGGCTCCTCTACACCCTCCAAGAAGGAGAGCAAGAAGGCAGGAGGCAAGAAGGAGGACAAGGCAGGAGGCAAGAAGAGGAAGTccgacagaggagaggaagaaaaggaGCAAGGAGGGAACGACAGTTTTAAGAGCCGAGAGTTTATCTCCAGCGAGGAGAGTTCGTCTGAGGGCGAACGGAAGAAGGCCAAGAAAGCCAAAGGCAAACCCAAGGGCAAGgaatctgaggaagaggaggaagtggtGACCACGCCCCCCAGCTCTGAGGAGGACTCTgactaaggagagggagaggggcctCGCTGGAGCTTCTGATGACATCAGAACGAACAGGGAACATTTGGACAAGTTTACACAGTGACAGGTGCTCAAAGACATGCAGATTGATacaacgctctcacacacacacacacacacactaagcgtTACATGGACCAATAACTTGTACTCTGTCTGTATGTCCAACACATTCTTAGAAAGTGAATTATTATGTACTACATTACCCATGATTCTACTGGGTTCTATTCTATTCGCCCCATGGGGATGGTTGTAGTTTAAAAGCACTGAGACATGCAGGGGTCTTCAGTCTTGAGTTTTTTTCTTGTTGCTTGTCCTTTTGACCTGTTTAGAGAAATGACGAACAGCAATTCTGTACTTTTCTTACATTTTCATTTCCATGTCatgtttgtttctttgttttcAGACAGAATGAATAAATCTTTTGTAATAAAA
>XM_036969619.1
CACCTTTGAAAAGTGTTACTTTCTGGAAAGTAGAACGAAACGGAAGTAAATTCTAAGGTAGTAGGGATTATTTCCGGTGACGTCGGCTCTTGGGCTGATGCTTCACGCGGGAAACAGCGAGGTCTCCTCATCACGTTGACATTGAACACCACTTCTCGTGGAGGCAGAGATGGGAGACACGCTTGAGTTCAACGAGATCTACCAGGAATCCAAGGGGTCCTGGAACGACGGTCGTCTGAGGTTCAGTAAGCAGAATGTGGTGTATAAGAGCAGTAAGACGGGGAAGGTGGACAACATCCCGGCAGCAGAGCTGTCCCAGGCCACGTGGAGGCGTGTGTGCCTGGGACACGGCATCAAGCTGGCCACCAGCACCGGACATGTCTACAAATATGACGGCTTCAGAGACACGGATTATGAGAGGATCTCGGAGTTCTTCAAGGCCAACTACAAGGTGGAGCTGACAGAGAAGGACATGTGTGTGAAGGGCTGGAACTGGGGCACTGCTAAATTCTCTGGTCCATTGTTGTCATTTGACGTGAATGACAGCTCCGTGTTTGAGATCCCCCTGGCCAGCGTGTCCCAGTGTGCCACCGGGAAGAACGAGGTGACGCTGGAGTTCCACCAGAACGATGACGCTGAGGTCTCTCTCATGGAGGTCCGTTTCTACGTCCCCCCCGGCCCCGCAGACGAGGGGGCAGACCCCGTGGAGGCGTTTGCCGCGAATGTGCTGTCTAAGGCCGATGTGATCCAGGCTACAGGAGATGCTGTGTGTGTCTTCAAAGAGCTGCAGTGCCTCACACCCAGGGGCAGgtATGATATCCTCATCTACCCCGccttcctccacctccatggTAAGACGTTTGACTACAAGATCCCCTACACCACCGTGCTGCGTCTCTTCCTGCTTCCACACAAGGATCAGAGACAGATGTTCTTTGTGATCAGTCTGGACCCGCCCATCAAGCAGGGGCAGACCCGTTACCACTTCCTCATCCTGCTCTTCTCTAAGGAGGAGGAGCTCCGCCTCACCCTCAACATGAGCGAggaggaggtggagaagcgTTATGAAGGGAAGCTCAGTAAGAACATGTCAGGTTCTCTCTATGAGATGGTCAGCAGGGTGATGAAGGCTCTGGTCAACAGGAAGATCACCGTGCCCGGAAACTTCCAGGGGAACACCCCAGGGGCCCAGTGTATAACGTGTTCCTACAAGGCACAGTCCGGCCTGCTCTACCCACTGGAGAGGGGTTTCATCTACGTGCATAAGCCGCCCGTCCACCTGCGCTTCGAGGAGATCTCCTGTGTCAACTTCGCCAGAGGCACCACCACCACGCGCTCCTTCGACTTCGAGGTGGAGACCAAGCAGGGGAACCAGTTCACCTTCAGCAGCATCGAGAGGGAGGAGTACGGGAAGCTGTTTGACTTTGTCAACGCCAAGAAACTCAACATCAAGAATAGAGGATTCAAGGAGAAGAAGggcATGAAGAGTAAGAACAACGAGTACAGTGACTCCGATGAAGACCAGCACGATGCCTATCTGGAGAGGATGAAGGCTGAGGGCAAgatcagagaggagggagacggcAGCAACGACTCCGATGAAGACACCGATGAGTCTTTCAACCCTGGGGAGGAGAGTGATGTTGCTGAGGAgtaTGACAGTAACGCCTCAGAGAGTGAAAGCGGCAGCGGAGGTGATGGCAGCGATGACGAGGGAAAGAAGAAGACTGCAAAGAAGGCCAAAGTAGTGAAGGAGAGGAAGCCACGCaaagagaAGAAGCAGAAGGACACCAACGCCCCCAAGAGGCCGATGAGTTCCTACATGCTGTGGCTCAACTCCAGCCGCGAGCACATCAAGTCGGAAAACCCCGGAATCTCAATCACAGAGATCTCCAAGAAGGCCGGAGAGATGTGGAAACAGATAGGGAAGGACGAcaaagagGGGTGGGACAGGAAAGCAGAGGAGGCTAAGAAGAACTATGAGAAAGCCATGAAGGAATACAGAGAGAACGGTGGAGGCTCCTCTACACCCTCCAAGAAGGAGAGCAAGAAGGCAGGAGGCAAGAAGGAGGACAAGGCAGGAGGCAAGAAGAGGAAGTccgacagaggagaggaagaaaaggaGCAAGGAGGGAACGACAGTTTTAAGAGCCGAGAGTTTATCTCCAGCGAGGAGAGTTCGTCTGAGGGCGAACGGAAGAAGGCCAAGAAAGCCAAAGGCAAACCCAAGGGCAAGgaatctgaggaagaggaggaagtggtGACCACGCCCCCCAGCTCTGAGGAGGACTCTgactaaggagagggagaggggcctCGCTGGAGCTTCTGATGACATCAGAACGAACAGGGAACATTTGGACAAGTTTACACAGTGACAGGTGCTCAAAGACATGCAGATTGATacaacgctctcacacacacacacacacacactaagcgtTACATGGACCAATAACTTGTACTCTGTCTGTATGTCCAACACATTCTTAGAAAGTGAATTATTATGTACTACATTACCCATGATTCTACTGGGTTCTATTCTATTCGCCCCATGGGGATGGTTGTAGTTTAAAAGCACTGAGACATGCAGGGGTCTTCAGTCTTGAGTTTTTTTCTTGTTGCTTGTCCTTTTGACCTGTTTAGAGAAATGACGAACAGCAATTCTGTACTTTTCTTACATTTTCATTTCCATGTCatgtttgtttctttgttttcAGACAGAATGAATAAATCTTTTGTAATAAAA

Function

NR:

description
FACT complex subunit SSRP1-like

GO: NA

KEGG:

id description
K09272 SSRP1; structure-specific recognition protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969620.1 False 2837 mRNA 0.52 19 32971709 32983129
XM_036969621.1 False 2742 mRNA 0.52 18 32971709 32983275
XM_036969619.1 True 2749 mRNA 0.52 19 32971709 32983276

Neighbor

gene id symbol gene type direction distance location
LOC110505034 LOC106611683 coding downstream 7421 32952805 ~ 32964288 (-)
LOC110505033 NA coding downstream 23951 32941696 ~ 32947758 (-)
LOC110505031 LOC106611680 coding downstream 41206 32922123 ~ 32930503 (-)
LOC110505029 ran1 coding downstream 49930 32917573 ~ 32921779 (-)
LOC110505028 stx3 coding downstream 59202 32889438 ~ 32912507 (-)
LOC110505040 md19b coding upstream 92645 33075921 ~ 33084678 (-)
LOC110505036 LOC106611662 coding upstream 106212 33089488 ~ 33099866 (-)
LOC110505041 LOC106611664 coding upstream 117074 33100350 ~ 33104850 (-)
selenoh LOC106611674 coding upstream 125116 33108392 ~ 33110382 (-)
LOC110511522 LOC106604660 coding upstream 136670 33119946 ~ 33123535 (-)
G2273261 NA non-coding downstream 502 32970751 ~ 32971207 (-)
G2273048 NA non-coding downstream 1836 32969560 ~ 32969873 (-)
G2273046 NA non-coding downstream 4596 32966901 ~ 32967113 (-)
G2273045 NA non-coding downstream 4931 32966572 ~ 32966778 (-)
G2273032 NA non-coding downstream 13128 32937297 ~ 32958581 (-)
G2273289 NA non-coding upstream 49798 33033074 ~ 33033293 (-)
G2273291 NA non-coding upstream 52402 33035678 ~ 33036426 (-)
G2273323 NA non-coding upstream 94486 33077762 ~ 33079729 (-)
G2272324 NA other downstream 717771 32253383 ~ 32253938 (-)
LOC110505004 LOC102314576 other downstream 1796658 31172148 ~ 31175109 (-)
LOC110504988 LOC106515624 other downstream 2396439 30566629 ~ 30575299 (-)
G2270673 LOC106611749 other downstream 2651792 30283733 ~ 30319917 (-)
G2270186 NA other downstream 2899580 30070378 ~ 30072129 (-)
LOC110505054 LOC106611652 other upstream 328640 33308270 ~ 33313952 (-)
LOC110505064 LOC106611642 other upstream 715309 33693783 ~ 33765421 (-)
LOC110505071 LOC106611637 other upstream 1083419 34008192 ~ 34106811 (-)
G2275717 NA other upstream 2168642 35151918 ~ 35152583 (-)
LOC110505098 LOC106611615 other upstream 2610149 35593425 ~ 35600758 (-)

Expression


Co-expression Network