LOC110505040 (md19b)


Basic Information

Item Value
gene id LOC110505040
gene name md19b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 33075921 ~ 33084678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969624.1
GTAGTGGGGAGTAAGGCCATCGTCATTACACATTTTGTCGGCCAATATATTCCTGGTATTACGGTACTTCTCCAATGGAAAATATGCAATGACAGTATACAACTATACCACAAAGGAGTAGAGACTAGTCAAGCGATGTTGTCAGATTGTCGTCTGTAGTCACATGTGTACAAAACTAACCGTATTGCTTTAGGAAGACATCGATGTATTAGTTATTTAAATGTATTACTCGCAATAGATATGACGGAAATGTTTTCAACTCTGTATGGGCAAAATGATGCTCAGGGACCTCCCCGATCATCGTCTCTGGGATTTGGACCGGGAAATCCACCACCCCCTCTACCGCCTAACCAAGTCCCGATGGCGGCCCAGATGCCACCTCAGCTCGGGGATGAGGGGCCTGCTCTACGGAAACCGGGAGCCATGAACGAACCTTTTTATTTACTGCGAGAACTACCAGTGGGCAATGAGCTTACGGGCAACACCAACCTCATCACCCATTACAACCTGGAACACGCTTACAACAAGTTCTGTGGCAAGAAAGTCAAGGAAAAGCTCAGCAACTTCCTGCCAGAGTTACCAGGTATGATAGACTGGCCTGGTACCCAGGATGGCAGTTCGTTGCGCTCTCTGATAGAGAAGCCTCCAGTGTGTGGCAACTCCTTCAGCCCTCTGACCGGAGCCAGCCTCACCGGCTTCAGACTGCACACCGGaccgcTACCGGAGCAGTACCGACTGATGCACATCCAGCCTCCAAAGAAGAAGAGCAAGCATAAGCACAAACACAACCGACCACAGGATCCCATACCTCAAGAGACACCCTCAGACTCTGAccccaagaagaagaagaagaaaagagaTGACGACCCTGACCGCAAGAAGAAAAAGAAAGACAAGAAAAAGAAGAAGGTGCGTGCGGGTACTGGTGTTCTCCCTGGCCAGAAGAGGTAGACCATTTTAATTAGCTTCATTATTTTCTAGAAATATTTGTATTATATTGAATGTGTAGGCTACCTGTTCAGAGGAATGCACTTGATGTTTATCATTTTGTGTATTTCTCATGTGCTTGCCATTGATTGTTGTGTCACTAATTCCCTATTAAGTCGCTGTTACTACtttgtatgtttttttaaatattttttttacatcacaCTGCTCTTTGTGCCGAGTTGTGGTAGCTAGCCGTGATCCTGAATCACTATTTTCTTGTGCGGTGTTTTGAAAGGAGtatcatgactgtcctgtgacgatctgaaggatcaggttacagtgggtccgCTCTACAGCGTGCTCTCGCTCTCATAGAAGGGGAGAGCGGGAAGTCTGCCGTTTTATGGCGGTCATAAAATACGCTGCCCCAATGCTCTGTAGTGTTGGAGGTTGGAATGTAAACTgtgagaacacagagacacccttggacatcaaaagtatgaataattaaacaatatttatatTGTTGAGAATGTGGgagtggtccgtggacacttatgaagagtgtgtttcatttggtgatctcatgaaggacaggaaacacacaacgGTTTCCCTTAAAGTGTACTTTTCCCAGCTGTCAGGTTCACATCTAAA
>XM_021583983.2
GTAGTGGGGAGTAAGGCCATCGTCATTACACATTTTGTCGGCCAATATATTCCTGGTATTACGGTACTTCTCCAATGGAAAATATGCAATGACAGTATACAACTATACCACAAAGGAGTAGAGACTAGTCAAGCGATGTTGTCAGATTGTCGTCTGTAGTCACATGTGTACAAAACTAACCGTATTGCTTTAGGAAGACATCGATGTATTAGTTATTTAAATGTATTACTCGCAATAGATATGACGGAAATGTTTTCAACTCTGTATGGGCAAAATGATGCTCAGGGACCTCCCCGATCATCGTCTCTGGGATTTGGACCGGGAAATCCACCACCCCCTCTACCGCCTAACCAAGTCCCGATGGCGGCCCAGATGCCACCTCAGCTCGGGGATGAGGGGCCTGCTCTACGGAAACCGGGAGCCATGAACGAACCTTTTTATTTACTGCGAGAACTACCAGTGGGCAATGAGCTTACGGGCAACACCAACCTCATCACCCATTACAACCTGGAACACGCTTACAACAAGTTCTGTGGCAAGAAAGTCAAGGAAAAGCTCAGCAACTTCCTGCCAGAGTTACCAGGTATGATAGACTGGCCTGGTACCCAGGATGGCAGTTCGTTGCGCTCTCTGATAGAGAAGCCTCCAGTGTGTGGCAACTCCTTCAGCCCTCTGACCGGAGCCAGCCTCACCGGCTTCAGACTGCACACCGGaccgcTACCGGAGCAGTACCGACTGATGCACATCCAGCCTCCAAAGAAGAAGAGCAAGCATAAGCACAAACACAACCGACCACAGGATCCCATACCTCAAGAGACACCCTCAGACTCTGAccccaagaagaagaagaagaaaagagaTGACGACCCTGACCGCAAGAAGAAAAAGAAAGACAAGAAAAAGAAGAAGAACCGCCACAGTCCGGACCACCCTGGCCTGGCTGGCTCTCAGCCCAACAGCCTCcgatagaccagacagagacaacaagtgtgtgtgtgtgtgtgtgtgtgtttgagaagcTGGTACGAGTGTGTTTAGAAGAATATGTATTTAGATAACGAGAGATTATGCTTGTGTGACAGGGAGGGGAAAGACAGTCTTATGTGTGTGTGGTAGATTGGATGTCAGCAGTGTAATATTGTTCGAGGATGAGAGACGGAAGGCCACTGATATTCTGAATGAGTGTATGTTATGTTCCCCTTTTTCATTTGGTTGTGATATTCTCTGACCACATATTCCAATAAACTGTTTTTGTCCATGCTGCCTTGA
>TU2600319
CGGGAAGTCTGCCGTTTTATGGCGGTCATAAAATACGCTGCCCCAATGCTCTGTAGTGTTGGAGGTTGGAATGTAAACTgtgagaacacagagacacccttggacatcaaaagtatgaataattaaacaatatttatatTGTTGAGAATGTGGgagtggtccgtggacacttatgaagagtgtgtttcatttggtgatctcatgaaggacaggaaacacacaacgGTTTCCCTTAAAGTGTACTTTTCCCAGCTGTCAGGTTCACA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969624.1 False 1587 mRNA 0.46 6 33075921 33084678
XM_021583983.2 False 1269 mRNA 0.48 6 33079981 33084678
TU2600319 True 266 lncRNA 0.42 1 33075927 33076192

Neighbor

gene id symbol gene type direction distance location
LOC110505035 LOC100286423 coding downstream 92645 32971709 ~ 32983276 (-)
LOC110505034 LOC106611683 coding downstream 111633 32952805 ~ 32964288 (-)
LOC110505033 NA coding downstream 128163 32941696 ~ 32947758 (-)
LOC110505031 LOC106611680 coding downstream 145418 32922123 ~ 32930503 (-)
LOC110505029 ran1 coding downstream 154142 32917573 ~ 32921779 (-)
LOC110505036 LOC106611662 coding upstream 4810 33089488 ~ 33099866 (-)
LOC110505041 LOC106611664 coding upstream 15672 33100350 ~ 33104850 (-)
selenoh LOC106611674 coding upstream 23714 33108392 ~ 33110382 (-)
LOC110511522 LOC106604660 coding upstream 35268 33119946 ~ 33123535 (-)
LOC110505044 LOC106611660 coding upstream 72263 33156941 ~ 33167435 (-)
G2273291 NA non-coding downstream 39495 33035678 ~ 33036426 (-)
G2273289 NA non-coding downstream 42628 33033074 ~ 33033293 (-)
G2273261 NA non-coding downstream 104714 32970751 ~ 32971207 (-)
G2273048 NA non-coding downstream 106048 32969560 ~ 32969873 (-)
G2273046 NA non-coding downstream 108808 32966901 ~ 32967113 (-)
G2273352 NA non-coding upstream 68144 33152822 ~ 33173509 (-)
G2273335 NA non-coding upstream 130217 33214895 ~ 33216902 (-)
G2273408 NA non-coding upstream 149891 33234569 ~ 33243889 (-)
G2272324 NA other downstream 821983 32253383 ~ 32253938 (-)
LOC110505004 LOC102314576 other downstream 1900870 31172148 ~ 31175109 (-)
LOC110504988 LOC106515624 other downstream 2500651 30566629 ~ 30575299 (-)
G2270673 LOC106611749 other downstream 2756004 30283733 ~ 30319917 (-)
G2270186 NA other downstream 3003792 30070378 ~ 30072129 (-)
LOC110505054 LOC106611652 other upstream 227238 33308270 ~ 33313952 (-)
LOC110505064 LOC106611642 other upstream 613907 33693783 ~ 33765421 (-)
LOC110505071 LOC106611637 other upstream 982017 34008192 ~ 34106811 (-)
G2275717 NA other upstream 2067240 35151918 ~ 35152583 (-)
LOC110505098 LOC106611615 other upstream 2508747 35593425 ~ 35600758 (-)
G2273323 NA non-coding upstream 1570 33077762 ~ 33079729 (-)

Expression


Co-expression Network