LOC110505056 (LOC105028844)


Basic Information

Item Value
gene id LOC110505056
gene name LOC105028844
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 33328263 ~ 33421963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969766.1
GTCTCCCTCGAGAGCACTAGAGCCTCCGAACCCGAGAGAAGGTGCGCTCCGCTGGGACAGAGGAAGCATaaagagacggggagggagggaatgagattTCTTGCTACCCAATCCCCCTTTTCCCCTGGGAGAGCAAGCCTTCCATGGTCCGTCCCTCCCTCTTGTTTGGTAATCATTTCATTTTACTCCTTTTTGAAGCAGTCGCTTGTTTTATCCCACTTTTCATTTCACAATCCCGTGCGCGTATGTTCGCCTTCTTCTGATCAACTTCGGCATCTCCCCTCTCTTTACTCACAACGAAAAGGTATCCTAGATCCCGGCTGATTCTTCTCCTTCGAGATGCTTAACTGTTCTAGCgctcaccctctctccaccctcttttAACTTGAGACCGGTTAAGCTTGAGCGAACTGAACTGGGGTTGGAATTAAAAATAAAGCGGAAAAACCCAAAGGGATACGACGCTCGTCTTTGGATAAGGACCGCTATCGCTTTCCCCCTTGTTGCACTTTGGGGAAGATTCTTCCCTTTTCAGTTGCTCGTCGTTAATCCAGGTGGCCTTGTGAGTTGGTTAAGAGAGAGTTCCCAGAAGGTTACTTTCATGTTCTCCATCCAGGACAGCCTCCCGCGGGGAGCCTTGACCATGAAAGAGGAACCGCTCACGAGTGGCATGACACCGGTCCGCTCTTGGATGCAGAGCGCGGGGATATTGGACGCGAACACAGCAGCACAAAGCGGTGTAGGTCTGGCCCGGGCtcactatgaaaaacagccccccTCGAACCTACGCAAATCCAACTTCTTCCACTTCGTGTTGGCGCTGTACGACCGACAGGGCCAGCCCGTGGAGATCGAGAGAACCTCTTACATAGACTTTGTGGAGAAAGACAAAGAGTACAATGGAGAGAAGACCAACAACGGCATCCATTACAGGCTACAGCTCCTGTACAGTAACGGCATCAGGACAGAACAAGATCTGTTTGTACGGCTAATAGACTCCATGACCAAACAGGCAATCCTCTACGAGGGCCAGGACAAAAACCCAGAGATGTGCCGTGTCCTTCTCACCCACGAGATCATGTGCAGTCGTTGTTGTGACAAGAAGAGCTGTGGAAACCGCAACGAGACGCCCTCCGACCCAGTCATCATTGACAGATTCTTCCTGAAGTTCTTCCTCAAGTGCAATCAgaattgtttgaaaaatgcagGGAACCCACGAGACATGAGAAGGTTTCAGGTGGTGGTCTCCACTACGGTGAACGTGGACGGCCATGTCCTTGCTGTCTCCGACAACATGTTTGTCCACAACAACTCCAAACATGGCAGGAGGGCCCGACGCCTGGACCCCTCTGAAGCAGCTACGCCCTGCATCAAAGCCATCAGCCCGAGTGAGGGGTGGACGACCGGGGGAGCCACTGTCATCATCATCGGAGACAACTTCTTTGACGGACTGCAGGTGGTCTTCGGTACTATGCTGGTCTGGAGTGAGCTAATCACGCCCCACGCCATCCGGGTCCAGACGCCCCCTCGCCACATCCCAGGGGTCGTGGAGGTCACGCTCTCTTACAAATCCAAGCAGTTCTGCAAAGGGGCGCCAGGACGCTTTGTCTACACCGccTTGAATGAGCCCACCATCGACTACGGCTTCCAGAGGCTACAGAAGGTCATCCCCAGACACCCAGGGGATCCCGAGAGGTTACCTAAGGAAGTGCTGTTAAAGCGATCAGCAGACTTAGTAGAAGCCCTGTACGGAATGCCCCACAATAACCAGGAGATCATTCTGAAGCGGGCAGCTGACCTGACCGAGGCCCTGTACAGTGTCCCCCGCAGCCACAACCAGCTGCCTTCGCTTAGCGGCTCGGCCGCTCACTCCGGCATGATGGGAGTCAACTCCTTCAGCAGCCAGCTGGCCGTCAACATCTCCGAGGCCTCGCAGGGGGACCAGGGTTACTCCCGTAACTCCAACAGCGTATCGCCCCGTGGCTACGTCCCCAGCTCCACGCCCCAGCAGTCCAACTATAACACCATCACGTCCACCATGAACGGCTACGGAGCGGGCATGACCAACCTCGGGGTGCCAGGCTCACCCAGCTTCCTCAACGGCTCCGCTGCCAACTCCCCCTACGCAAGATctaccacctccccctcctcctcctactcctcctcctcttcctccatccctctgttctCCGGTGGACCCATAGGCCCTTATTCATTCTCTCCTGTCCATATGATCTCTGCAGTCAAACAGAAGAGCGCCTTCGCCCCTGTCGTGCGGCCACAGACCTCCCCGCCCCCCACCTGCACCACCACCAATGGCAGCAGCCTCCAGGCCATGGCAGGTCTAATAGTCCCACCTATGTGAAGAGGGCCCACTGCCAGATTgaccacatctccactagctcacaGAATCTCTACAGCATCAGCTTAAATCTCATCAACCTCCAAAACAGGACCATCAAGCCTCTTCACTCCTGGGAACAGAACAACAAAGAAAATCCAAGTAACCAGAAAACCCCTAAAATGACGCTAGATTATCTTTGTGTTGGTTCAGTAGTTGACTTCATCGTCACTTTCTGTGTTTTGCATTTTGGGACTTGTAAGCCATTCCTTGCCCAACAGGTAGCATTTCCACATAGATATGTATGAAGGGTTAACTAATCTGAAAATATAGCAATGTGAATAACAAACTGTGGTTTTGAAAGGCAGGTAGTTACTCCTTGTCGTGTAAGCATTGTCCGGCGTCCTACAAGGTTCATTTGCATGTCGGGACAACTATTTTGACTGGATCTTCTAATGAACCTAGTTCGTTGTCAGTCATATAACCACTGTGAGCAGGTAGAGTCTAAAGGCCTACAGTTCAAAACGGTCAACTATGGAAAAAGTGCAGAAGCCATGAATATCCAACACTCTGTCAATTGTCCGACTCAAAATCGGCGGGAGTTTCAATGAGAATTCCCCACAATGTCTATAAAAAAATCGGCTTCAAAAAGACAACTGATATCTAATGTCGTAGTCTTTTAGCATTTTAATTTGTGTACCATAGCTTTTAATAATGTGCGTTTATCATATCTGAAGGAAAATGCAGTAATTTTCTAATCTAACGAAAGGGTTGGCAAACATTCTGGCTAGGAGCAAATAGCAAATGTTGTACTAAACCGCCCGAGGTTTTGAGGTTAAAGGGTTTTAGATGTCTACCATTTTTAAAACATAGTACAATAGATATATTTCCGGGTGTGTTGATTGGTAGATTTTAACCAGAAATGCTTGCAGCAGTTTTAATCACATTTAGGTACCAGATTTCTTGTTATTCTTCTGATTGTGCTTATTTTGTATGTATTTATAAAGTATGTTTTGGGATTCCTTTTGTGATTTAGGCCTGAATGATAGTCTTAAATATATATGTAAACACATTTGATGTCTTAATACCTTTTAGATATTGTAAAAAGATTGAAAAAGGAGAGGAACAACCCTTTTGTAAAAACGAAAAAAGTCAAACATGACATGGTCACCCTGTCTTTTAAAGCAGGATATACGCCCCACCACTTTTGTATAAAAATGGTTTTCCGATACtatatttaactttttttttgtaTACAGCATTTGTGTTTTCGCCAGTTCTCCTTGTCTTTTGTGTATTATTGTGAAATGTGTATTATCATGGTTATTTCTTAATGCACTATTTTAGTTGGGGCACTTACAAGAGCAATGCATCTTAGCAAGcaagaaaaaaatagaaaaaaggaAAACAATTACAGAAaatggagataaaaaaaaatacaaaagacaAAGGCTAGTACAAATATGCACCAagatgattttttttgttgtagcCATTCTTCGATTCACATTTTTGTCAGTGTGGCTAAAATGGCAAGGTTGTTTTCATGTGAATTTCTCTTTTTCAAAAACACTTCCATCCTAATCCTCCATACTCCTTACTTCAAATTTTAGGCGTATCCATTTTTTTTCGTTCATTGGTTACAATTCAACTCCTTTCCCATCTTAACTACGGACCCAAGCCTATTCCTTGTGTTTTGGTGATAATGAATGTAATACACATGCCTGAATCAGCAGCGAGGTTGAAACTCAAGTACACCCTCCAATAACTGCTGTGGAGGGACCACTCAAGTGTAGGGTTCACCGATCTCAAGGAACCTTCCATTGATGTCAGTGTTGTCGGTGGTGTTATTGTCGTTGCACACAATCTGTATCATGTACTTATGCAATGTGTATTTCCTGTAAAGCAAGCTATCGCTCCACATTTCAGTGGAAATGGTTTTGAAACGTAAAAGAACACAAGACATAATTGATGCCTTACAATAGAACACGCTCCAATACAATGCATTTTCATTATTTTGATACTCTTAATTGAAGTGTGGTCTTAgaatacaacttttttttttttttaaatagagttATGCTGTTGCAGATTTATTTATTCCTTATTTTTACCAGGTGAGTTGACTGAGAatacgttctcatttacagcaacgccCTGGGGGAAAGTTACAAAACATAGCAGAAATAAATAGATGTCTAAGAATTAGTTACAGTTGTCCTTCATTTGATGGTTTTGAATGATCATTTGAGCTGCAGTGGATGTAGTTTAAACTAGGATATGTTGAACGATACATCCTCCAAATTTCCACATAGCCCGTGTCACATAATGATAGTGGGACAATAGGTCACAAAAATCAATGATGCGTCTGATTAAACCTTTGATTTTATGCTAATTCTGTGCAGTGATTGACATAAATCGGCTATCATCGGGTGGCATCAACATGTAGTGTGGGCTTGTGAAGAAAAGAAAAAAAGTGAAGGGAAAATCTGTTGCACCACTTTGAGAGAGCCATTTTTCAATTACGCGAGTCAAGGCCAGCTCATAGAATGTCATCTGAATTCAATATTATGGACTTCTAAACCCATTTTCAATGAAAACACACGTTTTCTCTTCGAGTTAAATCTTGGCTGACTTCTCACAatcctccccctcacccccatGTGTCCATTCCATCCCTATACTGAGTTTTCAAATAGcttgcaaaatattttttgtttgtttgttatagTTGTAGAAAGCTTGCTTTTTGCTGCCCTGGTTTTCTGCAGAGGTTTTTTTCAATTGCAAAGTGTACTTTCTCAATGTTTTATTCAATATGAAAAGGGGAGAGGTACTGCATCTTTGTCAAATATGAAATGTACCATCAAAGTATACTCTATCAAAGCACAATGTTTAATTAATGTCTCTAAAATACAAAAGGGGGGTATCCCCCCCGCTTTTCCTTTTCTGTCTTTGACCATGCTGTAAATagatgcatgttttttttctgtgaTCCAGTGCTTTTTTGTACAGAAACAGACTAATAAAGAATACATTTGGCTTGAAAA
>TU2600208
GCAGGGACAATCTCTTTCAAAAGCCACACTGTGTCCGATTCAACTCTTCAATTCATTGGGGAAACATGGAAACTTCACACTATGGTTCCATTTTGAAAGGCTCTACTCTTACCAAATTGAATGATCACTTTTGACATCATATTTATTAACCCTTGTTCTGATTTGAAGTGTAAAGGGAATTGTGCTCAAACAGGTTACTCCCGTAACTCCAACAGCGTATCGCCCCGTGGCTACGTCCCCAGCTCCACGCCCCAGCAGTCCAACTATAACACCATCACGTCCACCATGAACGGCTACGGAGCGGGCATGACCAACCTCGGGGTGCCAGGCTCACCCAGCTTCCTCAACGGCTCCGCTGCCAACTCCCCCTACTCAAACAGAAGAGCGCCTTCGCCCCTGTCGTGCGGCCACAGACCTCCCCGCCCCCCCACCTGCACCACCACCAATGGCAGCAGCCTCCAGGCCATGGCAGGTCTAATAGTCCCACCTATGTGAAGAGGGCCCACTGCCAGATTgaccacatctccactagctcacaGAATCTCTACAGCATCAGCTTAAATCTCATCAACCTCCAAAACAGGACCATCAAGCCTCTTCACTCCTGGGAACAGAACAACAAAGAAAATCCAAGTAACCAGAAAACCCCTAAAATGACGCTAGATTATCTTTGTGTTGGTTCAGTAGTTGACTTCATCGTCACTTTCTGTGTTTTGCATTTTGGGACTTGTAAGCCATTCCTTGCCCAACAGGTAGCATTTCCACATAGATATGTATGAAGGGTTAACTAATCTGAAAATATAGCAATGTGAATAACAAACTGTGGTTTTGAAAGGCAGGTAGTTACTCCTTGTCGTGTAAGCATTGTCCGGCGTCCTACAAGGTTCATTTGCATGTCGGGACAACTATTTTGACTGGATCTTCTAATGAACCTAGTTCGTTGTCAGTCATATAACCACTGTGAGCAGGTAGAGTCTAAAGGCCTACAGTTCAAAACGGTCAACTATGGAAAAAGTGCAGAAGCCATGAATATCCAACACTCTGTCAATTGTCCGACTCAAAATCGGCGGGAGTTTCAATGAGAATTCCCCACAATGTCTATAAAAAAATCGGCTTCAAAAAGACAACTGATATCTAATGTCGTAGTCTTTTAGCATTTTAATTTGTGTACCATAGCTTTTAATAATGTGCGTTTATCATATCTGAAGGAAAATGCAGTAATTTTCTAATCTAACGAAAGGGTTGGCAAACATTCTGGCTAGGAGCAAATAGCAAATGTTGTACTAAACCGCCCGAGGTTTTGAGGTTAAAGGGTTTTAGATGTCTACCATTTTTAAAACATAGTACAATAGATATATTTCCGGGTGTGTTGATTGGTAGATTTTAACCAGAAATGCTTGCAGCAGTTTTAATCACATTTAGGTACCAGATTTCTTGTTATTCTTCTGATTGTGCTTATTTTGTATGTATTTATAAAGTATGTTTTGGGATTCCTTTTGTGATTTAGGCCTGAATGATAGTCTTAAATATATATGTAAACACATTTGATGTCTTAATACCTTTTAGATATTGTAAAAAGATTGAAAAAGGAGAGGAACAACCCTTTTGTAAAAACGAAAAAAGTCAAACATGACATGGTCACCCTGTCTTTTAAAGCAGGATATACGCCCCACCactttttttttgtaTACAGCATTTGTGTTTTCGCCAGTTCTCCTTGTCTTTTGTGTATTATTGTGAAATGTGTATTATCATGGTTATTTCTTAATGCACTATTTTAGTTGGGGCACTTACAAGAGCAATGCATCTTAGCAAGcaagaaaaaaatagaaaaaaggaAAACAATTACAGAAaatggagataaaaaaaaatacaaaagacaAAGGCTAGTACAAATATGCACCAagatgattttttttgttgtagcCATTCTTCGATTCACATTTTTGTCAGTGTGGCTAAAATGGCAAGGTTGTTTTCATGTGAATTTCTCTTTTTCAAAAACACTTCCATCCTAATCCTCCATACTCCTTACTTCAAATTTTAGGCGTATCCATTTTTTTTCGTTCATTGGTTACAATTCAACTCCTTTCCCATCTTAACTACGGACCCAAGCCTATTCCTTGTGTTTTGGTGATAATGAATGTAATACACATGCCTGAATCAGCAGCGAGGTTGAAACTCAAGTACACCCTCCAATAACTGCTGTGGAGGGACCACTCAAGTGTAGGGTTCACCGATCTCAAGGAACCTTCCATTGATGTCAGTGTTGTCGGTGGTGTTATTGTCGTTGCACACAATCTGTATCATGTACTTATGCAATGTGTATTTCCTGTAAAGCAAGCTATCGCTCCACATTTCAGTGGAAATGGTTTTGAAACGTAAAAGAACACAAGACATAATTGATGCCTTACAATAGAACACGCTCCAATACAATGCATTTTCATTATTTTGATACTCTTAATTGAAGTGTGGTCTTAgaatacaacttttttttttttttaaatagagttATGCTGTTGCAGATTTATTTATTCCTTATTTTTACCAGGTGAGTTGACTGAGAatacgttctcatttacagcaacgccCTGGGGGAAAGTTACAAAACATAGCAGAAATAAATAGATGTCTAAGAATTAGTTACAGTTGTCCTTCATTTGATGGTTTTGAATGATCATTTGAGCTGCAGTGGATGTAGTTTAAACTAGGATATGTTGAACGATACATCCTCCAAATTTCCACATAGCCCGTGTCACATAATGATAGTGGGACAATAGGTCACAAAAATCAATGATGCGTCTGATTAAACCTTTGATTTTATGCTAATTCTGTGCAGTGATTGACATAAATCGGCTATCATCGGGTGGCATCAACATGTAGTGTGGGCTTGTGAAGAAAAGAAAAAAAGTGAAGGGAAAATCTGTTGCACCACTTTGAGAGAGCCATTTTTCAATTACGCGAGTCAAGGCCAGCTCATAGAATGTCATCTGAATTCAATATTATGGACTTCTAAACCCATTTTCAATGAAAACACACGTTTTCTCTTCGAGTTAAATCTTGGCTGACTTCTCACAatcctccccctcacccccatGTGTCCATTCCATCCCTATACTGAGTTTTCAAATAGcttgcaaaatattttttgtttgtttgttatagTTGTAGAAAGCTTGCTTTTTGCTGCCCTGGTTTTCTGCAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969766.1 False 5391 mRNA 0.45 17 33328263 33421963
TU2600208 True 3206 TUCP 0.39 5 33416090 33421685

Neighbor

gene id symbol gene type direction distance location
LOC110504157 LOC106611656 coding upstream 90152 33233099 ~ 33238111 (+)
LOC110505049 LOC106611655 coding upstream 111359 33187186 ~ 33216904 (+)
LOC110505047 LOC106611658 coding upstream 141789 33184143 ~ 33186474 (+)
LOC110505045 LOC106611611 coding upstream 146135 33180497 ~ 33182128 (+)
LOC110505043 LOC106611661 coding upstream 174988 33143080 ~ 33153275 (+)
LOC110504159 LOC106611648 coding downstream 144028 33565991 ~ 33580238 (+)
LOC110505058 LOC106611649 coding downstream 161326 33583289 ~ 33593641 (+)
igfbp7 igfbp-rp1 coding downstream 171833 33593796 ~ 33611915 (+)
noa1 LOC106611647 coding downstream 207644 33629607 ~ 33636966 (+)
LOC110505061 LOC106611645 coding downstream 231065 33653028 ~ 33673207 (+)
G2273203 NA non-coding upstream 30137 33297927 ~ 33298126 (+)
G2273198 NA non-coding upstream 53342 33274482 ~ 33274921 (+)
G2273130 NA non-coding upstream 202889 33124561 ~ 33125374 (+)
G2273114 NA non-coding upstream 230425 33096513 ~ 33097838 (+)
G2273069 NA non-coding upstream 245197 33079991 ~ 33083066 (+)
G2273598 NA non-coding downstream 90163 33512126 ~ 33512504 (+)
G2273635 NA non-coding downstream 140180 33562143 ~ 33620377 (+)
G2273654 LOC106611646 non-coding downstream 217241 33639204 ~ 33639522 (+)
G2273681 NA non-coding downstream 220331 33642294 ~ 33642504 (+)
G2272912 LOC106611792 other upstream 464484 32863436 ~ 32866226 (+)
G2271027 NA other upstream 2147156 31176890 ~ 31181107 (+)
G2268400 LOC106611722 other upstream 4430184 28896755 ~ 28898079 (+)
G2268340 NA other upstream 4560534 28766877 ~ 28767729 (+)
G2266826 NA other upstream 6392374 26934720 ~ 26935889 (+)
LOC110505080 LOC106611630 other downstream 780120 34202011 ~ 34207415 (+)
G2274048 NA other downstream 810032 34231995 ~ 34232604 (+)
nudt6 nudt6 other downstream 1501995 34923553 ~ 34939399 (+)
G2282300 NA other downstream 6821458 40243421 ~ 40243722 (+)
G2286532 NA other downstream 10130268 43552231 ~ 43552920 (+)

Expression


Co-expression Network