G2245011


Basic Information

Item Value
gene id G2245011
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 4397181 ~ 4398253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2567205
ctagtggttagagtgtagaggtggcaggtagcctagtggttagagtgtagaggtggcagggtggcctagtggttagagtgtagaggtggcagggtggcctagtggttagagtgtagaggtggcaggtagcctagtggttagagtgtagagacggcaggtagcctagtggttagagtgtagagacggcaggtagcctagtggttagagtgtagatgtggcaggtagcctagtggttagagtgtaggggcgacaggtagcctagtggttagagtgtagagacgg
>TU2567207
agagtgtagaggtggcaggtagcctagtggttagagtgtagagacggcaggtagcctagtggttagagtgtagggacggcaggtagtctagtggttagagtgtagaggtggcaggtagcctagtggttagagtgtagaggtggcaggtagcctagtggttagagtgtagaggtggcagggtggcctagtggttagagtgtagaggtggcagggtggcctagtggttagagtgtagaggtggcaggtagcctagtggttagagtgtagagacggcaggtagcctagtggttagagtgtagagacggcaggtagcctagtggttagagtgtagatgtggcaggtagcctagtggttagagtgtaggggcgacaggtagcctagtggttagagtgtagagacgg
>TU2567206
agagtgtagaggtggcaggtagcctagtggttagagtgtagagacggcaggtagcctagtggttagagtgtagggacggcaggtagtctagtggttagagtgtagaggtggcaggtagcctagtggttagagtgtagaggtggcaggtagcctagtggttagagtgtagagacggcaggtagcctagtggttagagtgtagagacggcaggtagcctagtggttagagtgtagagacggcaggtagcctagtggttagagcataggggaggcaggtaacctagtggttagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2567205 False 282 lncRNA 0.54 2 4397181 4397654
TU2567207 False 401 lncRNA 0.54 4 4397181 4398253
TU2567206 True 292 lncRNA 0.53 2 4397674 4398253

Neighbor

gene id symbol gene type direction distance location
LOC110513918 syub coding downstream 106690 4236169 ~ 4290491 (-)
LOC110504518 LOC106612310 coding downstream 197238 4130654 ~ 4199943 (-)
higd2a LOC106612309 coding downstream 296465 4098767 ~ 4100716 (-)
LOC110489654 LOC104930052 coding downstream 339015 3968916 ~ 4058166 (-)
LOC118946073 NA coding downstream 428375 3967634 ~ 3968806 (-)
LOC110504469 LOC106612313 coding upstream 191180 4589433 ~ 4594305 (-)
LOC118945992 NA coding upstream 389186 4787439 ~ 4788320 (-)
LOC110504358 LOC106604155 coding upstream 1090476 5488729 ~ 5526792 (-)
LOC110504491 LOC106604157 coding upstream 1134606 5532859 ~ 5604780 (-)
LOC110504359 LOC106612272 coding upstream 1309165 5707418 ~ 5731006 (-)
G2245008 NA non-coding downstream 1399 4395533 ~ 4395782 (-)
G2245000 NA non-coding downstream 6235 4390011 ~ 4390946 (-)
G2244996 NA non-coding downstream 12209 4384576 ~ 4384972 (-)
G2244987 NA non-coding downstream 19360 4377539 ~ 4377821 (-)
G2244954 NA non-coding downstream 61401 4333633 ~ 4335780 (-)
G2245014 NA non-coding upstream 10497 4408750 ~ 4409013 (-)
G2245019 NA non-coding upstream 23628 4421881 ~ 4422181 (-)
G2245128 NA non-coding upstream 59396 4457649 ~ 4458007 (-)
G2245129 NA non-coding upstream 68037 4466290 ~ 4466502 (-)
G2245166 NA non-coding upstream 145032 4543285 ~ 4543871 (-)
G2244811 NA other downstream 284180 4111702 ~ 4113001 (-)
G2243801 NA other downstream 1459639 2936604 ~ 2937542 (-)
G2243777 NA other downstream 1509722 2885291 ~ 2887459 (-)
si:ch211-274f20.2 LOC106612323 other downstream 1811995 2575623 ~ 2585197 (-)
G2245152 ctnna1 other upstream 137588 4535841 ~ 4621990 (-)
G2246314 NA other upstream 1449866 5848119 ~ 5852599 (-)
G2247416 NA other upstream 2472334 6870587 ~ 6871100 (-)
G2247565 NA other upstream 2540370 6938623 ~ 7024539 (-)
G2247813 NA other upstream 2857091 7255344 ~ 7255940 (-)

Expression


Co-expression Network