Gene
RNA
| Item | Value |
|---|---|
| gene id | G2245265 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050571.1 |
| NCBI id | CM025858.1 |
| chromosome length | 44108611 |
| location | 4729352 ~ 4729707 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: pre-rRNA-processing protein TSR1 homolog |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2567518 | True | 356 | lncRNA | 0.43 | 1 | 4729352 | 4729707 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110504469 | LOC106612313 | coding | downstream | 135047 | 4589433 ~ 4594305 (-) |
| LOC110513918 | syub | coding | downstream | 438861 | 4236169 ~ 4290491 (-) |
| LOC110504518 | LOC106612310 | coding | downstream | 529409 | 4130654 ~ 4199943 (-) |
| higd2a | LOC106612309 | coding | downstream | 628636 | 4098767 ~ 4100716 (-) |
| LOC110489654 | LOC104930052 | coding | downstream | 671186 | 3968916 ~ 4058166 (-) |
| LOC118945992 | NA | coding | upstream | 57732 | 4787439 ~ 4788320 (-) |
| LOC110504358 | LOC106604155 | coding | upstream | 759022 | 5488729 ~ 5526792 (-) |
| LOC110504491 | LOC106604157 | coding | upstream | 803152 | 5532859 ~ 5604780 (-) |
| LOC110504359 | LOC106612272 | coding | upstream | 977711 | 5707418 ~ 5731006 (-) |
| LOC118946011 | NA | coding | upstream | 1009587 | 5739294 ~ 5740052 (-) |
| G2245260 | NA | non-coding | downstream | 4619 | 4724417 ~ 4724733 (-) |
| G2245238 | NA | non-coding | downstream | 20968 | 4708181 ~ 4708384 (-) |
| G2245219 | NA | non-coding | downstream | 32830 | 4658687 ~ 4696522 (-) |
| G2245211 | ctnna1 | non-coding | downstream | 66421 | 4631980 ~ 4662931 (-) |
| G2245270 | NA | non-coding | upstream | 3359 | 4733066 ~ 4733338 (-) |
| G2245352 | NA | non-coding | upstream | 111035 | 4840742 ~ 4841111 (-) |
| G2245358 | NA | non-coding | upstream | 114482 | 4844189 ~ 4846096 (-) |
| G2245376 | NA | non-coding | upstream | 134013 | 4863720 ~ 4863974 (-) |
| G2245487 | NA | non-coding | upstream | 227270 | 4956977 ~ 4960423 (-) |
| G2245152 | ctnna1 | other | downstream | 107362 | 4535841 ~ 4621990 (-) |
| G2244811 | NA | other | downstream | 616351 | 4111702 ~ 4113001 (-) |
| G2243801 | NA | other | downstream | 1791810 | 2936604 ~ 2937542 (-) |
| G2243777 | NA | other | downstream | 1841893 | 2885291 ~ 2887459 (-) |
| G2246314 | NA | other | upstream | 1118412 | 5848119 ~ 5852599 (-) |
| G2247416 | NA | other | upstream | 2140880 | 6870587 ~ 6871100 (-) |
| G2247565 | NA | other | upstream | 2208916 | 6938623 ~ 7024539 (-) |
| G2247813 | NA | other | upstream | 2525637 | 7255344 ~ 7255940 (-) |
| G2248522 | NA | other | upstream | 3311169 | 8040876 ~ 8041480 (-) |
