G2249734 (LOC106591829)


Basic Information

Item Value
gene id G2249734
gene name LOC106591829
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 9406063 ~ 9486066 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2572952
ctctctctctctctctctctctctctctctctctctctctctctgtgtgtctctctctttctctctctctctctctctctctctctctctctctctgtctctctgtctctctgtctctgtctctctttctctctctctctctctctctctctctctctctcgctctctctctctctctctctctctctctcatcaatgatatccctccatccatctctccttagTGAGCGTAGTAGAGCCAGTAGATCACGTTAAAGAAGGAGAACACGGTAGGGAAGATCATCCTGGACCACTTGTCGATAGAGTTCACATCAGCCAGGTCAGGGATGTTGACCTTGAGCTGCGAGGCCCGTCTCCGTAGGCGGGACTTCTTCTGGGTGGCGTGGCGCTCCAGGGCGCTGTGAGGTCCGCCCCCGTAGTTCTGTCGGGCCATGGCGGCCCTGCGGTACTGCAGCGTGGAGCTGTCGTAGGCCAGCATGGTGTTGCGCGGGTCACCCAGACCCCCAGGGCCCAGGGACCTGGACAGCTCAGGAGGAACACCCCCCATCTCGTTCTTCATCTCCAGGGAACCAAACAGGATGTTGTCATCAGTCAGGGAGGTGGTCA
>TU2572955
tctctctctctctctctctctctctcgctctctctctctctctctctctctctctctctctctctcatcaatgatatccctccatccatctctccttagTGAGCGTAGTAGAGCCAGTAGATCACGTTAAAGAAGGAGAACACGGTAGGGAAGATCATCCTGGACCACTTGTCGATAGAGTTCACATCAGCCAGGTCAGGGATGTTGACCTTGAGCTGCGAGGCCCGTCTCCGTAGGCGGGACTTCTTCTGGGTGGCGTGGCGCTCCAGGGCGCTGTGAGGTCCGCCCCCGTAGTTCTGTCGGGCCATGGCGGCCCTGCGGTACTGCAGCGTGGAGCTGTCGTAGGCCAGCATGGTGTTGCGCGGGTCACCCAGACCCCCAGGGCCCAGGGACCTGGACAGCTCAGGAGGAACACCCCCCATCTCGTTCTTCATCTCCAGGGAACCAAACAGGATGTTGTCATCAGTCAGGGAGGTGGTCA
>TU2572959
tctctctctctctctctctctctctcgctctctctctctctctctctctctctctctctctcatcaatgatatccctccatccatctctccttagTGAGCGTAGTAGAGCCAGTAGATCACGTTAAAGAAGGAGAACACGGTAGGGAAGATCATCCTGGACCACTTGTCGATAGAGTTCACATCAGCCAGGTCAGGGATGTTGACCTTGAGCTGCGAGGCCCGTCTCCGTAGGCGGGACTTCTTCTGGGTGGCGTGGCGCTCCAGGGCGCTGTGAGGTCCGCCCCCGTAGTTCTGTCGGGCCATGGCGGCCCTGCGGTACTGCAGCGTGGAGCTGTCGTAGGCCAGCATGGTGTTGCGCGGGTCACCCAGACCCCCAGGGCCCAGGGACCTGGACAGCTCAGGAGGAACACCCCCCATCTCGTTCTTCATCTCCAGGGAACCAAACAGGATGTTGTCATCAGTCAGGGAGGTGGTCA
>TU2572960
tctctctctctctctctctctctctcgctctctctctctgtctctctctcgctctctctctcatcaatgatatccctccatccatctctccttagTGAGCGTAGTAGAGCCAGTAGATCACGTTAAAGAAGGAGAACACGGTAGGGAAGATCATCCTGGACCACTTGTCGATAGAGTTCACATCAGCCAGGTCAGGGATGTTGACCTTGAGCTGCGAGGCCCGTCTCCGTAGGCGGGACTTCTTCTGGGTGGCGTGGCGCTCCAGGGCGCTGTGAGGTCCGCCCCCGTAGTTCTGTCGGGCCATGGCGGCCCTGCGGTACTGCAGCGTGGAGCTGTCGTAGGCCAGCATGGTGTTGCGCGGGTCACCCAGACCCCCAGGGCCCAGGGACCTGGACAGCTCAGGAGGAACACCCCCCATCTCGTTCTTCATCTCCAGGGAACCAAACAGGATGTTGTCATCAGTCAGGGAGGTGGTCA
>TU2572951
CATGCATTCGGTAAATGAACTAATATATAGGCTGAATTGAGTTTTAATTGAATTTAGGTACATCTTCATAATGGCTGACAATCAATACACAAGTTATTTACATTAGTCATTATTATGAAATATTACAATTGGAATTTACAGGAACTTTGTAGAAAATATGATGATGATACGTCATGGCAACGTGGTTGATTCATCTCGGGTCCTGTCACAGTCATTTCTGGAGAGAAACAAATGGTTTTGAGCCATGCATAAAAAGACAGATGTTTTATTAGAGTCTGataggtggtagtggtagagctTCAGTTTCCTCGCTGCCAAGTAGCTGCTTTTAAAAGTAGAAAgaaatggggaaaaaaataagaaatataaACAAAGAAAAAACTCCAAGAACAAAGTACAGTGTCAGGAAAAATTATATGTATATTATTTCCTTCAACGAATTTAAGATTTTTTCTTTTTATAATCTGGCCACGGTACATTTCACCTGTTAGTTAGactgcaaaaaaacaacaacagacccaTTTAAATATATAATTCATTCATAATATTTATACATCTGGCTTTTCATGAATATTTAGTTTATAAAAATGGACCATGTCCTTTACAACATGATTTTTAAAACCTTATATCTACAATTCACCAAAACATAAAACCTAATCACAATGGAACGTGTCAAAGTTCTAGAACCAATAAACTCTATTGATATGATTGTGGATTACTAGATTTATGCAGGAACTTTCATTGCAATGAAAGATGGGCTTAGCTCTCTTGACGTCCATCAGCAATGTAAATAAGCACCCCCCTgggtaataaataaataaagccaTTCTCACCCCTTAATGCCGCCCACATTGGCAATGCAGAGGCAAGGGTTACAcagtactgtctctctcttttaaaCCAGGGCAGTTTGATGTGATGGACTACTAGATTCTGTCAGTACAACAAAGTCAGGTCAAAAACACTTGGCAGGTCAGAGCTTCAAGATCCATGGTCGTACCATACCTTTTACACATGAAACCTTCATGGGAACTTCAATGGCCAGAATGGATGATGGGTCGTGATCTCTAGGTTAAAGGTCACGAACCCACAAATTGGCAGGACAGAAACGGCAACACTGAAGACCCATTGGAATGTCCATAGAGAAGAGTGCCCCCTGTTGACCATCTGCGGTACTATCACTTACAGTAGCCCATTGTTGTTGGTCCCCAATTGAACCCCAAAAGCTCAGCCTAAGCTACAGTATGGGGGTGAAAAGAGTTCTGCAGACACTCTTTGCTACACAGAAGAAAAAAGCTCAACTAGTTAAAAACTCAAATGCTTTGTGCCCCATCGATTAGGATGGAGACGCAGCAGAAATGAAATAGAAGCATGCTTTTTAAAGAATGTTTTTGTATTAGAATAACTACAGGAAAATAGTTTAATCAAGGATGAACCCCTTTAGAAACCCTCGGGAGAAAAGGTTTCCTGGATGCGGATAGCTCGGCTATGAACAAAATACATAGACTAAAACTAAACAAATCCTTAAAGTATATGCAAACACAAGCATAAATATTTGATCCACAGAGAGTTAAGCTACAAATGACAAATATTAGAGTGATATATTGACATTTCTTCAGGATTAGGCACCATGTATGTCTGTCTTGTCTTTTTaaaatctctcctctcctctgttgacTTGTCAGTCAGTCATTGGAGGGTATTCCCAGATCAGAAGAGTGTCACGGCAGATAGATGCTGTAGAAGAAGTGTTCGGGTGTAGAGCTCCTTCCTTCCAAAACAATTTTTCTCACATTTCTTTGAAAATGAATCAGCAAAATAATaggtgcgctctctctctctctctccccctctctctctctctgtctctctgtctctgtctctctttctctctctctctctctctctctctctctctctcgctctctctctctctctctctctctctctcatcaatgatatccctccatccatctctccttagTGAGCGTAGTAGAGCCAGTAGATCACGTTAAAGAAGGAGAACACGGTAGGGAAGATCATCCTGGACCACTTGTCGATAGAGTTCACATCAGCCAGGTCAGGGATGTTGACCTTGAGCTGCGAGGCCCGTCTCCGTAGGCGGGACTTCTTCTGGGTGGCGTGGCGCTCCAGGGCGCTGTGAGGTCCGCCCCCGTAGTTCTGTCGGGCCATGGCGGCCCTGCGGTACTGCAGCGTGGAGCTGTCGTAGGCCAGCATGGTGTTGCGCGGGTCACCCAGACCCCCAGGGCCCAGGGACCTGGACAGCTCAGGAGGAACACCCCCCATCTCGTTCTTCATCTCCAGGGAACCAAACAGGATGTTGTCATCAGTCAGGGAGGTGGTCA
>TU2572957
CATGCATTCGGTAAATGAACTAATATATAGGCTGAATTGAGTTTTAATTGAATTTAGGTACATCTTCATAATGGCTGACAATCAATACACAAGTTATTTACATTAGTCATTATTATGAAATATTACAATTGGAATTTACAGGAACTTTGTAGAAAATATGATGATGATACGTCATGGCAACGTGGTTGATTCATCTCGGGTCCTGTCACAGTCATTTCTGGAGAGAAACAAATGGTTTTGAGCCATGCATAAAAAGACAGATGTTTTATTAGAGTCTGataggtggtagtggtagagctTCAGTTTCCTCGCTGCCAAGTAGCTGCTTTTAAAAGTAGAAAgaaatggggaaaaaaataagaaatataaACAAAGAAAAAACTCCAAGAACAAAGTACAGTGTCAGGAAAAATTATATGTATATTATTTCCTTCAACGAATTTAAGATTTTTTCTTTTTATAATCTGGCCACGGTACATTTCACCTGTTAGTTAGactgcaaaaaaacaacaacagacccaTTTAAATATATAATTCATTCATAATATTTATACATCTGGCTTTTCATGAATATTTAGTTTATAAAAATGGACCATGTCCTTTACAACATGATTTTTAAAACCTTATATCTACAATTCACCAAAACATAAAACCTAATCACAATGGAACGTGTCAAAGTTCTAGAACCAATAAACTCTATTGATATGATTGTGGATTACTAGATTTATGCAGGAACTTTCATTGCAATGAAAGATGGGCTTAGCTCTCTTGACGTCCATCAGCAATGTAAATAAGCACCCCCCTgggtaataaataaataaagccaTTCTCACCCCTTAATGCCGCCCACATTGGCAATGCAGAGGCAAGGGTTACAcagtactgtctctctcttttaaaCCAGGGCAGTTTGATGTGATGGACTACTAGATTCTGTCAGTACAACAAAGTCAGGTCAAAAACACTTGGCAGGTCAGAGCTTCAAGATCCATGGTCGTACCATACCTTTTACACATGAAACCTTCATGGGAACTTCAATGGCCAGAATGGATGATGGGTCGTGATCTCTAGGTTAAAGGTCACGAACCCACAAATTGGCAGGACAGAAACGGCAACACTGAAGACCCATTGGAATGTCCATAGAGAAGAGTGCCCCCTGTTGACCATCTGCGGTACTATCACTTACAGTAGCCCATTGTTGTTGGTCCCCAATTGAACCCCAAAAGCTCAGCCTAAGCTACAGTATGGGGGTGAAAAGAGTTCTGCAGACACTCTTTGCTACACAGAAGAAAAAAGCTCAACTAGTTAAAAACTCAAATGCTTTGTGCCCCATCGATTAGGATGGAGACGCAGCAGAAATGAAATAGAAGCATGCTTTTTAAAGAATGTTTTTGTATTAGAATAACTACAGGAAAATAGTTTAATCAAGGATGAACCCCTTTAGAAACCCTCGGGAGAAAAGGTTTCCTGGATGCGGATAGCTCGGCTATGAACAAAATACATAGACTAAAACTAAACAAATCCTTAAAGTATATGCAAACACAAGCATAAATATTTGATCCACAGAGAGTTAAGCTACAAATGACAAATATTAGAGTGATATATTGACATTTCTTCAGGATTAGGCACCATGTATGTCTGTCTTGTCTTTTTaaaatctctcctctcctctgttgacTTGTCAGTCAGTCATTGGAGGGTATTCCCAGATCAGAAGAGTGTCACGGCAGATAGATGCTGTAGAAGAAGTGTTCGGGTGTAGAGCTCCTTCCTTCCAAAACAATTTTTCTCACATTTCTTTGAAAATGAATCAGCAAAATAATaggtgcgctctctcCCTCACCCTCAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2572952 False 606 lncRNA 0.56 2 9406063 9431343
TU2572955 False 481 lncRNA 0.58 2 9406472 9431343
TU2572959 False 477 lncRNA 0.58 2 9406472 9431343
TU2572960 False 477 lncRNA 0.58 3 9406472 9431343
TU2572951 False 2366 lncRNA 0.42 2 9428956 9431343
TU2572957 True 1851 lncRNA 0.37 2 9428956 9486066

Neighbor

gene id symbol gene type direction distance location
LOC110504533 sfxn1 coding upstream 157097 9224032 ~ 9248966 (+)
LOC110504529 pp2aa coding upstream 184837 9211817 ~ 9221226 (+)
LOC118946015 NA coding upstream 485836 8918493 ~ 8920227 (+)
LOC118946014 NA coding upstream 488616 8912720 ~ 8917447 (+)
LOC118946016 NA coding upstream 499104 8903750 ~ 8906959 (+)
nudcd2 nudcd2 coding downstream 62321 9548387 ~ 9552601 (+)
gdf9 LOC106612229 coding downstream 98180 9584246 ~ 9590828 (+)
LOC110504554 LOC106604229 coding downstream 114012 9600078 ~ 9602977 (+)
LOC110504537 LOC100380717 coding downstream 117753 9603819 ~ 9617333 (+)
LOC110504547 LOC106612224 coding downstream 131366 9617432 ~ 9622394 (+)
G2249725 NA non-coding upstream 22820 9382947 ~ 9383243 (+)
G2249698 NA non-coding upstream 56112 9349529 ~ 9349951 (+)
G2249688 NA non-coding upstream 63116 9342719 ~ 9342947 (+)
G2249590 NA non-coding upstream 86426 9319326 ~ 9319637 (+)
G2249566 NA non-coding upstream 143258 9258177 ~ 9262805 (+)
G2249794 NA non-coding downstream 15808 9501874 ~ 9502491 (+)
G2249812 NA non-coding downstream 54082 9540148 ~ 9541981 (+)
G2249813 NA non-coding downstream 56400 9542466 ~ 9544172 (+)
G2249776 LOC106612227 non-coding downstream 74049 9560115 ~ 9570892 (+)
G2249823 NA non-coding downstream 98256 9584322 ~ 9584581 (+)
G2249418 LOC106612241 other upstream 294741 9106708 ~ 9111322 (+)
G2249058 NA other upstream 571688 8831981 ~ 8834375 (+)
G2247754 NA other upstream 2169134 7236526 ~ 7236929 (+)
G2247747 NA other upstream 2181217 7224214 ~ 7224846 (+)
G2247687 NA other upstream 2270805 7132731 ~ 7135258 (+)
G2249785 LOC106604237 other downstream 179 9486245 ~ 9486922 (+)
G2250462 NA other downstream 742854 10228920 ~ 10229999 (+)
G2251174 NA other downstream 1710534 11196600 ~ 11199436 (+)
G2251181 NA other downstream 1727260 11213326 ~ 11213968 (+)

Expression

G2249734(LOC106591829) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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G2249734(LOC106591829) Expression in each Bioproject

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G2249734(LOC106591829) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network