XLOC_000414


Basic Information

Item Value
gene id XLOC_000414
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34857368 ~ 34861057 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002852
CCGGTTTTGTTCAGCACCACAAGAACATGAGGACGCGGCGAAAAGTTGGACAATTATCACAAATCTCCTACCGTGTAAGTACAGTTTGTATTCGTTTATAACATTATTGAGTTTTACACAAAGGAACTGAAATAAATGATGCACATTGTCAGTAGCGATGTGGAGTTGCCTTGATTAGGCTAAAATTAGCTGTTATGCTAAAAGTAAGTCGAGTTTGAGCAATATGTCATGTTAATACAGGAATCTGGCGCAGTTTATCAGGGTCATCCTACACTGGTCATCAAAGACAGCTGGTCAACATGTTTTCCAGCATCTCTGCCCATCATCCACCTGCTGTGTGTTCAGTCAGAGCTGAAAATGACCATTTCAGCAGGTCTACATGTTCGGTTAAGAGACTGGATTCTGAGAGCGAAA
>TCONS_00002853
CCGGTTTTGTTCAGCACCACAAGAACATGAGGACGCGGCGAAAAGTTGGACAATTATCACAAATCTCCTACCGTGTAAGTACAGTTTGTATTCGTTTATAACATTATTGAGTTTTACACAAAGGAACTGAAATAAATGATGCACATTGTCAGTAGCGATGTGGAGTTGCCTTGATTAGGCTAAAATTAGCTGTTATGCTAAAAGTAAGTCGAGTTTGAGCAATATGTCATGTTAATACAGGAATCTGGCGCAGTTTATCAGGGTCATCCTACACTGGTCATCAAAGACAGCTGGTCAACATGTTTTCCAGCATCTCTGCCCATCATCCACCTGCTGTGTGTTCAGTCAGAGCTGAAAATGACCATTTCAGGGTCAATAACAGTCAGTCATCTGTCAGACAGAATTCAAGACTCTTTCTCCAGGCCAGCTGTAAGAATCATATAAggctttgcatttatttattttctgttcattaaataattttattattacctttctcactgttgttttgtttgtctgtAGAATTGTCTCCAGTGCAAATGATCCTTTGTCATTCCACTCCCTGAGGACACTCCAGAGTAGGTGAGAAACTTGTTGAATGCTTAAAAGTGTATTTAGGTGTATAATGTGTATGAGTTCAC
>TCONS_00002854
GTAAAGTCTAACCACTTTTCTTTTAACTGCTcctgtaaaatagtttttgtacTCTAATTAATTAAACCGGTTCAAATTTGTCTTGCAGGGTCAATAACAATCAGTCATCTGTCAGACATAAGTCTGTAAGAATAATATAAggctttgcatttatttatttgttgttccttaaataattgaattattacTTTTCtcactgttgttttgtttgtctgtAGAATTGTCTCCAGTGCAAATGATCCTCTGTCATCACACTCCCTGAGGACACTCCAGAGTAGCAGGTCTACATGTTCGGTTAAGAGACTGGATTCTGAGAGCGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002852 False 414 lncRNA 0.42 2 34857368 34859323
TCONS_00002853 False 641 lncRNA 0.39 2 34857368 34861057
TCONS_00002854 True 322 lncRNA 0.35 2 34858806 34859323

Neighbor

gene id symbol gene type direction distance location
XLOC_000413 zgc:172122 coding upstream 50309 34763539 ~ 34807059 (+)
XLOC_000412 CR339054.7 coding upstream 129851 34696503 ~ 34727517 (+)
XLOC_000411 gtf2f2a coding upstream 150465 34695373 ~ 34706903 (+)
XLOC_000410 gpalpp1 coding upstream 163003 34685405 ~ 34694365 (+)
XLOC_000409 klf12a coding upstream 298564 34496855 ~ 34558804 (+)
XLOC_000415 NA coding downstream 173237 35034294 ~ 35093512 (+)
XLOC_000416 sc:d189 coding downstream 333397 35194454 ~ 35234700 (+)
XLOC_000417 usp38 coding downstream 612162 35473219 ~ 35491005 (+)
XLOC_000418 gab1 coding downstream 633780 35494837 ~ 35609659 (+)
XLOC_000419 hhip coding downstream 929025 35790082 ~ 35835863 (+)
XLOC_000408 NA non-coding upstream 402921 34450659 ~ 34454447 (+)
XLOC_000407 CR848003.1 non-coding upstream 457014 34400240 ~ 34400354 (+)
XLOC_000403 dre-mir-734 non-coding upstream 734396 34122880 ~ 34122972 (+)
XLOC_000401 CT573012.1 non-coding upstream 890095 33967157 ~ 33967273 (+)
XLOC_000400 CU915566.1 non-coding upstream 1122234 33735018 ~ 33735134 (+)
XLOC_000421 NA non-coding downstream 1035335 35896392 ~ 35898437 (+)
XLOC_000425 BX324156.1 non-coding downstream 1293204 36154261 ~ 36154377 (+)
XLOC_000431 NA non-coding downstream 2104943 36966000 ~ 36966282 (+)
XLOC_000432 FO704615.1 non-coding downstream 2262585 37123642 ~ 37123772 (+)

Expression


Co-expression Network