XLOC_004145 (snai1a)


Basic Information

Item Value
gene id XLOC_004145
gene name snai1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25251495 ~ 25257595 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007918
GCGGGTCCAAATGGACGTAAACCCACTTACTAGACTGTCAggctattttaaataagtacaggCTCACTAATTGTAGTGCATTTCACATCAGCGTTCACGTTACGAGAAGCACGGATTGGATCGTCGTTGCATTTCTGGGACTATCTGAGAGTGGAGGATTTAGTTTTTCCATCACTGAAAGTAACTGGAGTGGACTGATCAACTTCAGAGTTCAGCATGCCTCGGTCTTTCCTGGTAAAGAAGTATTTCACCAGCAAGAGGCCAAACTACAGCGAGCTGGAATGTCAGAACGACACTTCACCAGACAGATACCCGCTAGCAGAGCTTCCAGCAGTCAGCAATGACTTCCCAGTGACGTGTTTGACCACCGGACTGGTCTGGGACGTCAGCTTGCTACCTTCCCTTCACAATTCCCCATCCCCGTCCACCCTCTCCACAAACCAGGGCCCGCTGGACCTCAGCTCCCCATCCAGCATCAGCTGCAGCAGCAGTGGGGAAGAAGATGAAGGACGGACGTCAGACCCACCAAGCCCAGATTCCTCTGACACCTATCACCCCCAGCAAACTAGCAGGCCGCGACGCTCCAACAAGAGCAGGGCTGGACAGAGAGAGGACAAGAGCGAGGCTGCAGTTACTGCCGCCAGTCGACCAGCCTTCTTCTGCAAGCACTGTCCTAAAGAGTACAACAGCCTCGGGGCGCTGAAGATGCACATCCGCTCCCACACACTGCCCTGCGTCTGTCCCACCTGCGGAAAGGCCTTCTCCAGACCCTGGCTGCTGAGGGGacacattcgcacacatacagGTGAGCGTCCGTTCTCCTGCCCACACTGTAACCGTGCCTTCGCAGACCGCTCGAACCTCCGCGCGCACCTGCAGACCCACGCAGATGTGAAGAAATACCAGTGCAGCACCTGCTCTCGCACCTTCAGTCGCATGTCACTGCTGCAGAAACACAGCGCGGCCGGTTGCTGTCCCTCCACGGCCAATGTCCAATAGCCATTTTATTCTAATTCAGGACTAATGAGAAAAGCTTCTTCTCTAAACGGGCACAATATTCAACAGAAGGATGACGCATCATTAAAGCGGACTTCTTAAAACATTTCCAAATGCCTTTTTCCTCGAACCAAAATACTTCAGATGAAGGAATTATGAATGTTAAGGGTGTCCTGAAGCAGCTGCTGTCAGGTTGGGGGTGGGTTGACTATGGTAGGGTATGTCTCTcagcatgacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacagagacagCTGTTGTGTGGTGCGGAGGCAGTGTGCTAACAGGTGCCCTGACCGCCACATCTCTGAAAACAGGTGGCGTCTGCTGATTTCTCTGGAAACACACTTGGAGAGAGTCCTTATGGAGCACAGTTGACTGCTTTActtttttttgatgttgttgGTTTTAAAGTTTTGTAGCTTGCATGCGGAAGGTGCatcgcatgttttttttttttccaataattcTTTTCACCaaagattgttttttttactctgtctattgttctttttttgtacAGTTTTAAGTGCACTCCAATTTACCAAAGAGTATTGAAGTCCATTCATTTTGTATTATATCGAGTGATTGGACCATTGAAACCAAAGCCATgctttttcttttgtgtgtgtgtaatttaaagaGTTTTGAGACACTTCTGAATTTGTGAGGAAACGGACATTCTTATTAAACAACTACCAAATTTTATACACCTATCTATATTCCATCAACTTTTCGTCACATTTTATTGATGCCAGAATTTGTGCATAAAGTGTTTTCTTAAAACCGAATGAGTTCAGTGCAAtttttagcattttgtttttcttatttcttttgtatttgtccaaatcatttccattcaataaaataatttaagtttatacAAA
>TCONS_00007919
AATTCAAAGTTGTACTTTCACGAACCACTTAAACCAAGCTCATTCCAGACTCACGCTGACATCTGTTGAAAAGTGCATTGTGCACTTGTCAGCTCATCAAAAGCAGCGTTCACGTTACGAGAAGCACGGATTGGATCGTCGTTGCATTTCTGGGACTATCTGAGAGTGGAGGATTTAGTTTTTCCATCACTGAAAGTAACTGGAGTGGACTGATCAACTTCAGAGTTCAGCATGCCTCGGTCTTTCCTGGTAAAGAAGTATTTCACCAGCAAGAGGCCAAACTACAGCGAGCTGGAATGTCAGAACGACACTTCACCAGACAGATACCCGCTAGCAGAGCTTCCAGCAGTCAGCAATGACTTCCCAGTGACGTGTTTGACCACCGGACTGGTCTGGGACGTCAGCTTGCTACCTTCCCTTCACAATTCCCCATCCCCGTCCACCCTCTCCACAAACCAGGGCCCGCTGGACCTCAGCTCCCCATCCAGCATCAGCTGCAGCAGCAGTGGGGAAGAAGATGAAGGACGGACGTCAGACCCACCAAGCCCAGATTCCTCTGACACCTATCACCCCCAGCAAACTAGCAGGCCGCGACGCTCCAACAAGAGCAGGGCTGGACAGAGAGAGGACAAGAGCGAGGCTGCAGTTACTGCCGCCAGTCGACCAGCCTTCTTCTGCAAGCACTGTCCTAAAGAGTACAACAGCCTCGGGGCGCTGAAGATGCACATCCGCTCCCACACACTGCCCTGCGTCTGTCCCACCTGCGGAAAGGCCTTCTCCAGACCCTGGCTGCTGAGGGGacacattcgcacacatacagGTGAGCGTCCGTTCTCCTGCCCACACTGTAACCGTGCCTTCGCAGACCGCTCGAACCTCCGCGCGCACCTGCAGACCCACGCAGATGTGAAGAAATACCAGTGCAGCACCTGCTCTCGCACCTTCAGTCGCATGTCACTGCTGCAGAAACACAGCGCGGCCGGTTG

Function

symbol description
snai1a Enables NF-kappaB binding activity. Acts upstream of or within ameboidal-type cell migration; dorsal/ventral pattern formation; and epithelial to mesenchymal transition. Located in nucleus. Is expressed in several structures, including blastodisc; germ ring; mesoderm; pharyngeal arch; and presumptive mesoderm. Orthologous to human SNAI1 (snail family transcriptional repressor 1).

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001837 epithelial to mesenchymal transition biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0007369 gastrulation biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0051059 NF-kappaB binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-255 Enables NF-kappaB binding activity. Acts upstream of or within ameboidal-type cell migration; dorsal/ventral pattern formation; and epithelial to mesenchymal transition. Located in nucleus. Is expressed in several structures, including blastodisc; germ ring; mesoderm; pharyngeal arch; and presumptive mesoderm. Orthologous to human SNAI1 (snail family transcriptional repressor 1).

Ensembl:

ensembl_id ENSDARG00000056995

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007918 False 1942 mRNA 0.46 3 25251495 25257045
TCONS_00007919 True 986 mRNA 0.55 4 25252466 25257595

Neighbor

gene id symbol gene type direction distance location
XLOC_004143 myh7ba coding downstream 37806 25181886 ~ 25213689 (-)
XLOC_004144 dre-mir-499 coding downstream 46252 25205153 ~ 25205243 (-)
XLOC_004142 CR628365.2 coding downstream 283608 24967771 ~ 24967887 (-)
XLOC_004141 CR628365.1 coding downstream 431494 24819265 ~ 24820001 (-)
XLOC_004140 NA coding downstream 537202 24709784 ~ 24714293 (-)
XLOC_004146 si:ch211-232b12.5 coding upstream 56215 25313810 ~ 25324534 (-)
XLOC_004147 NA coding upstream 110517 25368112 ~ 25408896 (-)
XLOC_004148 gata1a coding upstream 154319 25411914 ~ 25418856 (-)
XLOC_004149 hcfc1a coding upstream 178845 25436440 ~ 25461336 (-)
XLOC_004150 NA coding upstream 217710 25475305 ~ 25476980 (-)
XLOC_004063 CR854846.1 misc downstream 9123817 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 12559804 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 12629728 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 12660199 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 12738233 12512966 ~ 12513262 (-)
XLOC_004131 CR354444.1 non-coding downstream 1350134 23900000 ~ 23901361 (-)
XLOC_004152 CR933820.1 non-coding upstream 412244 25669839 ~ 25669955 (-)
XLOC_004165 CR847934.1 non-coding upstream 1490697 26748292 ~ 26748429 (-)
XLOC_004167 NA non-coding upstream 2244610 27502205 ~ 27507973 (-)

Expression


Co-expression Network