XLOC_000415


Basic Information

Item Value
gene id XLOC_000415
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 35034294 ~ 35093512 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003086
ccccaagatttggtgcggtctcttctggccacccctaagaaaattttctgggggcgccactgcgtGGGACAGCGGTAAATCGCAGCTTTGTGCAGGAGGGATTTCATTATATGTTTGGCTTTCATCGGATGGACGGATGCTGTCTGGCGCACCACCAAAGAAGCAGACTTGAGAACAATCGCCTGAAGATCTCCGAGGACTTCTGCGGACAGAGAACAAAGACTGAAATTATGGCCCGCTGTCGAAGAAGCTCGTAAGGAAAacaagaaggctttctttgtcGGTGACCATGCCTTTGTAGATGGCATTGAGATTTCGCCTCCATCCTAAATTACAAAGGGAAAAGTATACTTGAGGCAATTGTAACTGAAAAAAATGCATGCTAATGCCCCCTTTCAGTACAAAATTACTCTCCTTTTAATATCTGTAAAAAAAGGAACGAAAGacgtatttaaatatttttgatttatgcAAGAAACAATAAAACCTTTTTCTCTGGAttaaaatttaagatatttttcttCCATATTTTTGGTTTATATAGACTGGGAAGAAACAGGCATTCAAATTCAGTTTTGTTAATTTGAAC
>TCONS_00003087
GTAGCTCCACACATACGTCCGCAGACTTGAGATACAGAGCAGAGTTCACCAgaatgatggggtttgagtctggtgaagaacggccCCAGAAagaagGGATGCTGTCTGGCGCACCACCAAAGAAGCAGACTTGAGAACAATCGCCTGAAGATCTCCGAGGACTTCTGCGGACAGAGAACAAAGACTGAAATTATGGCCCGCTGTCGAAGAAGCTCGTAAGGAAAacaagaaggctttctttgtcGGTGACCATGCCTTTGTAGATGGCATTGAGATTTCGCCTCCATCCTAAATTACAAAGGGAAAAGTATACTTGAGGCAATTGTAACTGAAAAAAATGCATGCTAATGCCCCCTTTCAGTACAAAATTACTCTCCTTTTAATATCTGTAAAAAAAGGAACGAAAGacgtatttaaatatttttgatttatgcAAGAAACAATAAAACCTTTTTCTCTGGAttaaaatttaagatatttttcttCCATATTTTTGGTTTATATAGACTGGGAAGAAACAGGCATTCAAATTCAGTTTTGTTAATTTGAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003086 False 589 lncRNA 0.40 2 35034294 35093512
TCONS_00003087 True 551 lncRNA 0.39 2 35076467 35093512

Neighbor

gene id symbol gene type direction distance location
XLOC_000414 NA coding upstream 173237 34857368 ~ 34861057 (+)
XLOC_000413 zgc:172122 coding upstream 227235 34763539 ~ 34807059 (+)
XLOC_000412 CR339054.7 coding upstream 306777 34696503 ~ 34727517 (+)
XLOC_000411 gtf2f2a coding upstream 327391 34695373 ~ 34706903 (+)
XLOC_000410 gpalpp1 coding upstream 339929 34685405 ~ 34694365 (+)
XLOC_000416 sc:d189 coding downstream 100942 35194454 ~ 35234700 (+)
XLOC_000417 usp38 coding downstream 379707 35473219 ~ 35491005 (+)
XLOC_000418 gab1 coding downstream 401325 35494837 ~ 35609659 (+)
XLOC_000419 hhip coding downstream 696570 35790082 ~ 35835863 (+)
XLOC_000420 si:ch211-194g2.4 coding downstream 769038 35862550 ~ 35867943 (+)
XLOC_000408 NA non-coding upstream 579847 34450659 ~ 34454447 (+)
XLOC_000407 CR848003.1 non-coding upstream 633940 34400240 ~ 34400354 (+)
XLOC_000403 dre-mir-734 non-coding upstream 911322 34122880 ~ 34122972 (+)
XLOC_000401 CT573012.1 non-coding upstream 1067021 33967157 ~ 33967273 (+)
XLOC_000421 NA non-coding downstream 802880 35896392 ~ 35898437 (+)
XLOC_000425 BX324156.1 non-coding downstream 1060749 36154261 ~ 36154377 (+)
XLOC_000431 NA non-coding downstream 1872488 36966000 ~ 36966282 (+)
XLOC_000432 FO704615.1 non-coding downstream 2030130 37123642 ~ 37123772 (+)
XLOC_000436 NA non-coding downstream 2497746 37591258 ~ 37638367 (+)

Expression


Co-expression Network