XLOC_004151 (si:dkey-245f22.3)


Basic Information

Item Value
gene id XLOC_004151
gene name si:dkey-245f22.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25528557 ~ 25539323 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007928
gacgtcaaatactaacatttattcgtcagATCTGTGCGCGTCCGTCCTGTTGGCGTGTCTGTTCTGCAGATTTTGGGACTGCGTGCTGGCGTTGGGTGACGGGTGTCAGTTCTGCGTGGCGTCTCTATGTTCCTCCTTCTGCTCGAGCATGTGCTGCTGCGATCCTTCCTCTCTGGAGGAACTGATAGATTTGTGTCCGTGCTGCAGTTGTGCTGAATATGTTGAGGCGTGCGGCTGCAGCTGTGGAGAAAACACCTTCGACTGCTCCATCTGCGACCTGTGTCTGCAGACCAGCGAGTGTCTGGAGCTCGGCATGGAACTCTCGCAGCTGCTGTTTCACTAGACGTCTCATGATCGTCCCATTAAAGCTGGAATGTGGCAAATGCAATGTGCTGATTTGATAAGCATGAAACGAAAATGCGCTGGTTGATGGTGGCTGTGATGCTGCACGGCTGCATTTTAATACTGCATCAGAGGAAAAAATTAAACGTGTAGTGTTGTTTACTTATCATCTGAAAGAGAATGtaacataatataaatttttctctgtcttttttattttgagaaatctGAGGGTAAATTTTATTGTTggaattgtaaaatataaactttattattatttaatttaaagtctgTGTCAACTTGAAGtggctgagacttttatttcagtacgTTGATGTACTTCTAATTGTGTATTCACACCGATggcagcgagagcgtcaaagtactCCTCCACCAGCGAGAGTGCACAGAGAGTGATTCGCCACAATGATCTCGTTTTTAAGAGGGGCCGTTCCAGCATATTAGCAAATCAGATACATTCccgaaaaaaaa
>TCONS_00007929
ATGGACTGTGATCATGAGGATGAACATGGTGGCCGCTCACTGACTGGATCAGAATCTAGCTTTCGTGAAGATGAAGCACAAATTAATTCAGCTCTTGCTATATCCACTTTTCAGCACTCTGACGTGCGTATAAAAGAAGTTCCAGCAGATGTGAAAACGGCATTTCAGGATGATCTAAACCCTCCTGTGAGCAACATCAGCGATGCCTTTCCTGTCTGTGTTCAACTGCCTGCAAACCATCTTAAAAATATGGCCACTTATAAAACAACACACCGTCATCGCAAAATCAGCCATTGTTCCTCCTCCACCATCAGAAGTGGAATGAGCCTGAGAGCCCCTGTAGAAGATCTGTGCGCGTCCGTCCTGTTGGCGTGTCTGTTCTGCAGATTTTGGGACTGCGTGCTGGCGTTGGGTGACGGGTGTCAGTTCTGCGTGGCGTCTCTATGTTCCTCCTTCTGCTCGAGCATGTGCTGCTGCGATCCTTCCTCTCTGGAGGAACTGATAGATTTGTGTCCGTGCTGCAGTTGTGCTGAATATGTTGAGGCGTGCGGCTGCAGCTGTGGAGAAAACACCTTCGACTGCTCCATCTGCGACCTGTGTCTGCAGACCAGCGAGTGTCTGGAGCTCGGCATGGAACTCTCGCAGCTGCTGTTTCACTAG
>TCONS_00007930
CTGCCATCTGACGAGCGATGAGATGAATGTGGTGATGAAGCAGTGAATTCTCTGAGAGAACTTTGTGAAGATGGACTGTGATCATGAGGATGAACATGGTGGCCGCTCACTGACTGGATCAGAATCTAGCTTTCGTGAAGATGAAGCACAAATTAATTCAGCTCTTGCTATATCCACTTTTCAGCACTCTGAGTCATCTGACAACAAAGAAATGGAATCTGCTAGAACGTGTCTAAAGGACAGTAAACTCTCACCAACAGATGACCTCTCTGATGGGAGGGAAAACTCATGCCTTATTTCTCCACTCAGCAAATCCAAACCACTCGCATTTGACGTGCGTATAAAAGAAGTTCCAGCAGATGTGAAAACGGCATTTCAGGATGATCTAAACCCTCCTGTGAGCAACATCAGCGATGCCTTTCCTGTCTGTGTTCAACTGCCTGCAAACCATCTTAAAAATATGGCCACTTATAAAACAACACACCGTCATCGCAAAATCAGCCATTGTTCCTCCTCCACCATCAGAAGTGGAATGAGCCTGAGAGCCCCTGTAGAAGATCTGTGCGCGTCCGTCCTGTTGGCGTGTCTGTTCTGCAGATTTTGGGACTGCGTGCTGGCGTTGGGTGACGGGTGTCAGTTCTGCGTGGCGTCTCTATGTTCCTCCTTCTGCTCGAGCATGTGCTGCTGCGATCCTTCCTCTCTGGAGGAACTGATAGATTTGTGTCCGTGCTGCAGTTGTGCTGAATATGTTGAGGCGTGCGGCTGCAGCTGTGGAGAAAACACCTTCGACTGCTCCATCTGCGACCTGTGTCTGCAGACCAGCGAGTGTCTGGAGCTCG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131126-30 No description available

Ensembl:

ensembl_id ENSDARG00000097510

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007928 False 834 processed_transcript 0.44 2 25528557 25532480
TCONS_00007929 False 660 mRNA 0.50 3 25529048 25538341
TCONS_00007930 True 839 mRNA 0.49 5 25529080 25539323

Neighbor

gene id symbol gene type direction distance location
XLOC_004150 NA coding downstream 51577 25475305 ~ 25476980 (-)
XLOC_004149 hcfc1a coding downstream 67221 25436440 ~ 25461336 (-)
XLOC_004148 gata1a coding downstream 109701 25411914 ~ 25418856 (-)
XLOC_004147 NA coding downstream 119661 25368112 ~ 25408896 (-)
XLOC_004146 si:ch211-232b12.5 coding downstream 204023 25313810 ~ 25324534 (-)
XLOC_004152 CR933820.1 coding upstream 130516 25669839 ~ 25669955 (-)
XLOC_004153 brpf3a coding upstream 173449 25712772 ~ 25734417 (-)
XLOC_004154 plch2b coding upstream 212875 25752198 ~ 25777318 (-)
XLOC_004155 skib coding upstream 243398 25782721 ~ 25829712 (-)
XLOC_004156 tmem51b coding upstream 293896 25833219 ~ 25853212 (-)
XLOC_004063 CR854846.1 misc downstream 9400879 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 12836866 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 12906790 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 12937261 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 13015295 12512966 ~ 12513262 (-)
XLOC_004144 dre-mir-499 non-coding downstream 323314 25205153 ~ 25205243 (-)
XLOC_004142 CR628365.2 non-coding downstream 560670 24967771 ~ 24967887 (-)
XLOC_004141 CR628365.1 non-coding downstream 708556 24819265 ~ 24820001 (-)
XLOC_004165 CR847934.1 non-coding upstream 1208969 26748292 ~ 26748429 (-)
XLOC_004167 NA non-coding upstream 1962882 27502205 ~ 27507973 (-)
XLOC_004169 NA non-coding upstream 2004255 27543578 ~ 27625465 (-)
XLOC_004173 BX601648.1 non-coding upstream 2244435 27783758 ~ 27806767 (-)

Expression


Co-expression Network