G2264113 (LOC100136700)


Basic Information

Item Value
gene id G2264113
gene name LOC100136700
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 23855609 ~ 23863973 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2589726
attttattCATCACTGAATCTGTGAAAAGGTCCTTATCGGGTTCCGATGGTAACCTGCCACACTCGGATCAGGTTATCGGTGTAGCCAGCAAACAGGGTCTGTCCGTCAGCAGACCAGGCCAGAGAGGTGCACTGTGGGGGCTCGGCCTTGCTGTTGGTGCTGATCACCTCCTGTCTTAGCTCATCCACAATGATCTTACCCTCCAGATCCTGAAGGGAGGGGAGATTTACATGACAACAGGATTGATGGAGGCATGGGTTTGGACCAACTCCTATTTAAA
>TU2589730
attttattCATCACTGAATCTGTGAAAAGGTCCTTATCGGGTTCCGATGGTAACCTGCCACACTCGGATCAGGTTATCGGTGTAGCCAGCAAACAGGGTCTGTCCGTCAGCAGACCAGGCCAGAGAGGTGCACTGTGGGGGCTCGGCCTTGCTGTTGGTGCTGATCACCTCCTGTCTTAGCTCATCCACAATGATCTTACCCTCCAGATCCCCAGATCTTGATGCTTGGGCCTGTGGCGGCGCAGAGCCAGTATCGGTTGGGGCTGAAGCAGAGGGCGTTGATGTTGTCACCACTATCTAGGGTGTACAGGTGCTTGCCCTCATTGAGGTCCCACAGCATGGCCTGACCATCCTTTCCACCAGAAGCGCAGAGGGAGCCATCgggagagacagtcactgtgttcAGGTAGCCAGTGTGGCCAATGTGGTTAGTCTTCAGCTTGCAGTTGGCCAGGTTCCACCTTGACCATCTTGTCCCAACCACAGGATACAATGATGGGGTTGCTGCTGTTGGGAGAGAAGCGCACACAGGACACCCACTCAGAGTGACTCTCATCCTGGATGGTGTACTTGCAGACTCCAAGGGTGTTCCACAGCTTGATGGTCTTGTCCCGGGAACCAGACACGATCTGGCGGTTGTCAGCAGAGAAAGCCACACTCAGGACGTCCTTGGTGTGACCCACAAAGCGGCGGGTGGTGGTACCACTGGAAGGATTAAAAAGATGAGAAGAAAGGTGCTTTAAAGAAGAAAGGTGAAAGAAGAAAGGTGAGAAGAAAGGTGCTTAAAAGAAGAAAGGTGAAAGAAGAAAGATGAGAAGAAAGGTGCTCTGTGATATCCCGGGGAGGCCTGTCCATCCATGGGATCGAGCAGGGTGGAGCAAGCACACACCCCCAGGCAGCAACAGGGCCAGGCAGCAACAGGGCCAGGCAGCAACAGGGCAGACGATACTCCATTAGTAAGGCAGTCATTACCCACTCTCCCTATTCATCAACCCTCCAGCAACACGTGTGTCTGTCCGTCCATCCGcccatcagtctgtctgtctgttaggttAGGAGTCTGTTTGCTCCTATATTTCTCGAACCCGATGTTGCTCCAAGATGGCTGTGTTCCATTTACTACATTTTACTTCACATCTAAAGTCTAGGTGTACAAAAAATATCTGTATCGATAGATATATCCAGTCTGGTTAATATTGTTGACTCAAAATAACGTCCATGATAAAAAAAAAGCTCAATATATTATATAAAACGTTTCCATAAAAAggcaaaaaataacaaaaaagcaATGTACTATTCAGTTGCAATATATACCATATCAATATGTACAGTGGCCACG
>TU2589729
AAAGAAATCCAACTGACACAGCTTTCTAAGAACAGACTGAAGTAACATGGCCCTGTTCTGTGGGACGTGATGCAAATGGACATATTATACCTGTCCGTCAGCAGACCAGGCCAGAGAGGTGCACTGTGGGGGCTCGGCCTTGCTGTTGGTGCTGATCACCTCCTGTCTTAGCTCATCCACAATGATCTTACCCTCCAGATCCCCAGATCTTGATGCTTGGGCCTGTGGCGGCGCAGAGCCAGTATCGGTTGGGGCTGAAGCAGAGGGCGTTGATGTTGTCACCACTATCTAGGGTGTACAGGTGCTTGCCCTCATTGAGGTCCCACAGCATGGCCTGACCATCCTTTCCACCAGAAGCGCAGAGGGAGCCATCgggagagacagtcactgtgttcAGGTAGCCAGTGTGGCCAATGTGGTTAGTCTTCAGCTTGCAGTTGGCCAGGTTCCACACCTAGAAACAGAAAGGGGTGTGGGAGACCACGTGTCAGGGTACATTAAGGGAAATGTAGTCTAGGTGTTTCAACCATTAAGTGTTACAAACATTGGATGAATGTGCAGTCTAGGTCCAGTACCCATCATCATTGCAGGACTTGTCAGATCCGAGGCTCAGGTGATAAAACTTAACATTGTAGTCATAGGGCAAGAAAGCACTATTTATCCTTAAAGCTTGATTTTACTACATCTACAGCAACCAAACCCCTCCTTAAGTACCTAAAAATCTCAGCTTAGTTCAATAAGGAACGCATCCCACTATCCTAGTGTGTCACAAGTGATGTACACGGTCGTCTGTACCTTGACCATCTTGTCCCAACCACAGGATACAATGATGGGGTTGCTGCTGTTGGGAGAGAAGCGCACACAGGACACCCACTCAGAGTGACTCTCATCCTGGATGGTGTACTTGCAGACTCCAAGGGTGTTCCACAGCTTGATGGTCTTGTCCCGGGAACCAGACACGATCTGGCGGTTGTCAGCAGAGAAAGCCACACTCAGGACGTCCTTGGTGTGACCCACAAAGCGGCGGGTGGTGGTACCACTGGAAGGATTAAAAAGATGAGAAGAAAGGTGCTTTAAAGAAGAAAGGTGAAAGAAGAAAGGTGAGAAGAAAGGTGCTTAAAAGAAGAAAGGTGAAAGAAGAAAGATGAGAAGAAAGGTGCTCTGTGATATCCCGGGGAGGCCTGTCCATCCATGGGATCGAGCAGGGTGGAGCAAGCACACACCCCCAGGCAGCAACAGGGCCAGGCAGCAACAGGGCCAGGCAGCAACAGGGCAGACGATACTCCATTAGTAAGGCAGTCATTACCCACTCTCCCTATTCATCAACCCTCCAGCAACACGTGTGTCTGTCCGTCCATCCGcccatcagtctgtctgtctgttaggttAGGAGTCTGTTTGCTCCTATATTTCTCGAACCCGATGTTGCTCCAAGATGGCTGTGTTCCATTTACTACATTTTACTTCACATCTAAAGTCTAGGTGTACAAAAAATATCTGTATCGATAGATATATCCAGTCTGGTTAATATTGTTGACTCAAAATAACGTCCATGATAAAAAAAAAGCTCAATATATTATATAAAACGTTTCCATAAAAAggcaaaaaataacaaaaaagcaATGTACTATTCAGTTGCAATATATACCATATCAATATGTACAGTGGCCACG

Function

NR:

description
RACK1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2589726 False 281 lncRNA 0.51 2 23855609 23856173
TU2589730 False 1339 TUCP 0.49 7 23855609 23863973
TU2589729 True 1673 lncRNA 0.47 5 23855902 23863973

Neighbor

gene id symbol gene type direction distance location
LOC110504805 LOC100691570 coding upstream 13191 23836618 ~ 23842418 (+)
LOC110504797 LOC106611931 coding upstream 153821 23694188 ~ 23701788 (+)
LOC110504798 NA coding upstream 174975 23675075 ~ 23680634 (+)
htr4 LOC106611927 coding upstream 716704 23048270 ~ 23138905 (+)
LOC118946027 NA coding upstream 841319 23004053 ~ 23014290 (+)
LOC110504821 LOC106611869 coding downstream 989060 24853033 ~ 24856333 (+)
LOC110504822 LOC106611910 coding downstream 1140300 25004273 ~ 25011653 (+)
LOC110504823 LOC106604841 coding downstream 1201515 25065488 ~ 25080226 (+)
LOC110504826 LOC106611870 coding downstream 1227659 25091632 ~ 25181408 (+)
LOC100136157 LOC100136157 coding downstream 1319249 25183222 ~ 25191478 (+)
G2264196 LOC106611940 non-coding upstream 7908 23846256 ~ 23847701 (+)
G2264175 NA non-coding upstream 59431 23795579 ~ 23796178 (+)
G2264174 NA non-coding upstream 60671 23794590 ~ 23794938 (+)
G2264155 NA non-coding upstream 95129 23751209 ~ 23760480 (+)
G2264203 NA non-coding downstream 3638 23867611 ~ 23868025 (+)
G2264205 NA non-coding downstream 8617 23872590 ~ 23872845 (+)
G2264207 NA non-coding downstream 11998 23875971 ~ 23877487 (+)
G2264209 NA non-coding downstream 15938 23879911 ~ 23880135 (+)
G2264213 NA non-coding downstream 22374 23886347 ~ 23886888 (+)
G2264115 NA other upstream 144523 23697688 ~ 23711086 (+)
G2263926 NA other upstream 329589 23525340 ~ 23526020 (+)
G2262601 NA other upstream 1581902 22269718 ~ 22273707 (+)
G2261587 NA other upstream 1846861 22008112 ~ 22008748 (+)
LOC110504779 LOC106612009 other upstream 1902490 21947801 ~ 21953127 (+)
G2264210 LOC106582338 other downstream 16808 23880781 ~ 23881032 (+)
G2264344 NA other downstream 326100 24190073 ~ 24190352 (+)
G2264345 NA other downstream 326777 24190750 ~ 24191035 (+)
G2265425 LOC106611874 other downstream 1351678 25215651 ~ 25244329 (+)
si:dkey-74k8.4 aldob other downstream 1718020 25557578 ~ 25586728 (+)

Expression


Co-expression Network